2j1k
CAV-2 fibre head in complex with CAR D1
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 2j1k |
| 沉积日期 deposition_date | 2006-08-14 |
| 结构标题 title | CAV-2 fibre head in complex with CAR D1 |
| 关键词 keywords | ;VIRUS-RECEPTOR COMPLEX, COMPLEX, MEMBRANE, RECEPTOR, PALMITATE, DOMAIN D1, IMMUNOGLOBULIN DOMAIN, HOST-VIRUS INTERACTION, GLYCOPROTEIN, FIBER PROTEIN, CELL ADHESION, PHOSPHORYLATION, TRANSMEMBRANE, TIGHT JUNCTION, COXSACKIEVIRUS, FIBER HEAD, ADENOVIRUS, FIBRE HEAD, LIPOPROTEIN, CAR, KNOB, FIBER, FIBRE, CAV-2, CANINE ;; VIRUS/RECEPTOR |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 58.46 Å |
| 回转半径 Rg (电子) rg_electron | 58.78 Å |
| 零角强度 I(0) i0 | 2213870000.00 |
| 分子量 molecular_weight | 399450.0 kDa |
| 排除体积 excluded_volume | 501760 ų |
| 包络体积 envelope_volume | 696720 ų |
| 水化壳体积 shell_volume | 102860 ų |
| 包络直径 envelope_diameter | 212.3 Å |
| 壳层 Rg shell_rg | 57.60 Å |
| 包络 Rg envelope_rg | 57.77 Å |
| 形状 Rg shape_rg | 58.77 Å |
| 总 Rg total_rg | 58.77 Å |
| 总原子数 total_atoms | 28097 |
| 残基数 n_residues | 3623 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 201.5 Å |
| Rg (实空间) rg_real | 58.71 Å |
| Rg 误差 (实空间) rg_real_error | 2.97 Å |
| I(0) (实空间) i0_real | 2.2140e+09 |
| I(0) 误差 (实空间) i0_real_error | 4.8310e+07 |
| Rg (倒空间) rg_reciprocal | 58.23 Å |
| I(0) (倒空间) i0_reciprocal | 2212000000.0000 |
| 解质量估计 total_estimate | 0.8541 |
| 解质量评级 solution_quality | GOOD a GOOD solution |
| P(r) 峰数 n_peaks | 2 |
| 主峰位置 r_peak_primary | 67.2 Å |
| 偏度 Skewness skewness | 0.454 |
| 峰度 Kurtosis kurtosis | -0.249 |
| 角度范围 angular_range | — – 0.1350 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 131300000.0000 |
| 实空间数据点数 n_real_points | 28 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.830; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.972; Smooth: 0.642 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (3)
6. 折叠分类 (SCOP + CATH) 48 domains
SCOP 2.08 (24 domains)
| 结构域编号 domain_id | d2j1ka_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.1 — Immunoglobulin-like beta-sandwich |
| 超家族 Superfamily superfamily | b.1.1 — Immunoglobulin |
| 家族 Family family | b.1.1.1 — V set domains (antibody variable domain-like) |
| 结构域编号 domain_id | d2j1kb_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.1 — Immunoglobulin-like beta-sandwich |
| 超家族 Superfamily superfamily | b.1.1 — Immunoglobulin |
| 家族 Family family | b.1.1.1 — V set domains (antibody variable domain-like) |
| 结构域编号 domain_id | d2j1kc1 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.21 — Virus attachment protein globular domain |
| 超家族 Superfamily superfamily | b.21.1 — Virus attachment protein globular domain |
| 家族 Family family | b.21.1.1 — Adenovirus fiber protein 'knob' domain |
| 结构域编号 domain_id | d2j1kd_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.21 — Virus attachment protein globular domain |
| 超家族 Superfamily superfamily | b.21.1 — Virus attachment protein globular domain |
| 家族 Family family | b.21.1.1 — Adenovirus fiber protein 'knob' domain |
| 结构域编号 domain_id | d2j1ke_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.21 — Virus attachment protein globular domain |
| 超家族 Superfamily superfamily | b.21.1 — Virus attachment protein globular domain |
| 家族 Family family | b.21.1.1 — Adenovirus fiber protein 'knob' domain |
| 结构域编号 domain_id | d2j1kf_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.21 — Virus attachment protein globular domain |
| 超家族 Superfamily superfamily | b.21.1 — Virus attachment protein globular domain |
| 家族 Family family | b.21.1.1 — Adenovirus fiber protein 'knob' domain |
| 结构域编号 domain_id | d2j1kg_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.1 — Immunoglobulin-like beta-sandwich |
| 超家族 Superfamily superfamily | b.1.1 — Immunoglobulin |
| 家族 Family family | b.1.1.1 — V set domains (antibody variable domain-like) |
| 结构域编号 domain_id | d2j1kh_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.21 — Virus attachment protein globular domain |
| 超家族 Superfamily superfamily | b.21.1 — Virus attachment protein globular domain |
| 家族 Family family | b.21.1.1 — Adenovirus fiber protein 'knob' domain |
| 结构域编号 domain_id | d2j1ki_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.21 — Virus attachment protein globular domain |
| 超家族 Superfamily superfamily | b.21.1 — Virus attachment protein globular domain |
| 家族 Family family | b.21.1.1 — Adenovirus fiber protein 'knob' domain |
| 结构域编号 domain_id | d2j1kj_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.1 — Immunoglobulin-like beta-sandwich |
| 超家族 Superfamily superfamily | b.1.1 — Immunoglobulin |
| 家族 Family family | b.1.1.1 — V set domains (antibody variable domain-like) |
| 结构域编号 domain_id | d2j1kk_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.1 — Immunoglobulin-like beta-sandwich |
| 超家族 Superfamily superfamily | b.1.1 — Immunoglobulin |
| 家族 Family family | b.1.1.1 — V set domains (antibody variable domain-like) |
| 结构域编号 domain_id | d2j1kl_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.21 — Virus attachment protein globular domain |
| 超家族 Superfamily superfamily | b.21.1 — Virus attachment protein globular domain |
| 家族 Family family | b.21.1.1 — Adenovirus fiber protein 'knob' domain |
| 结构域编号 domain_id | d2j1km_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.21 — Virus attachment protein globular domain |
| 超家族 Superfamily superfamily | b.21.1 — Virus attachment protein globular domain |
| 家族 Family family | b.21.1.1 — Adenovirus fiber protein 'knob' domain |
| 结构域编号 domain_id | d2j1kn_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.21 — Virus attachment protein globular domain |
| 超家族 Superfamily superfamily | b.21.1 — Virus attachment protein globular domain |
| 家族 Family family | b.21.1.1 — Adenovirus fiber protein 'knob' domain |
| 结构域编号 domain_id | d2j1ko_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.1 — Immunoglobulin-like beta-sandwich |
| 超家族 Superfamily superfamily | b.1.1 — Immunoglobulin |
| 家族 Family family | b.1.1.1 — V set domains (antibody variable domain-like) |
| 结构域编号 domain_id | d2j1kp_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.1 — Immunoglobulin-like beta-sandwich |
| 超家族 Superfamily superfamily | b.1.1 — Immunoglobulin |
| 家族 Family family | b.1.1.1 — V set domains (antibody variable domain-like) |
| 结构域编号 domain_id | d2j1kq_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.21 — Virus attachment protein globular domain |
| 超家族 Superfamily superfamily | b.21.1 — Virus attachment protein globular domain |
| 家族 Family family | b.21.1.1 — Adenovirus fiber protein 'knob' domain |
| 结构域编号 domain_id | d2j1kr_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.21 — Virus attachment protein globular domain |
| 超家族 Superfamily superfamily | b.21.1 — Virus attachment protein globular domain |
| 家族 Family family | b.21.1.1 — Adenovirus fiber protein 'knob' domain |
| 结构域编号 domain_id | d2j1ks_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.21 — Virus attachment protein globular domain |
| 超家族 Superfamily superfamily | b.21.1 — Virus attachment protein globular domain |
| 家族 Family family | b.21.1.1 — Adenovirus fiber protein 'knob' domain |
| 结构域编号 domain_id | d2j1kt_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.1 — Immunoglobulin-like beta-sandwich |
| 超家族 Superfamily superfamily | b.1.1 — Immunoglobulin |
| 家族 Family family | b.1.1.1 — V set domains (antibody variable domain-like) |
| 结构域编号 domain_id | d2j1kv_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.1 — Immunoglobulin-like beta-sandwich |
| 超家族 Superfamily superfamily | b.1.1 — Immunoglobulin |
| 家族 Family family | b.1.1.1 — V set domains (antibody variable domain-like) |
| 结构域编号 domain_id | d2j1kx_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.1 — Immunoglobulin-like beta-sandwich |
| 超家族 Superfamily superfamily | b.1.1 — Immunoglobulin |
| 家族 Family family | b.1.1.1 — V set domains (antibody variable domain-like) |
| 结构域编号 domain_id | d2j1ky_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.1 — Immunoglobulin-like beta-sandwich |
| 超家族 Superfamily superfamily | b.1.1 — Immunoglobulin |
| 家族 Family family | b.1.1.1 — V set domains (antibody variable domain-like) |
| 结构域编号 domain_id | d2j1kz_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.1 — Immunoglobulin-like beta-sandwich |
| 超家族 Superfamily superfamily | b.1.1 — Immunoglobulin |
| 家族 Family family | b.1.1.1 — V set domains (antibody variable domain-like) |
CATH v4.4 (24 domains)
| 结构域编号 domain_id | 2j1kA00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 10 — Immunoglobulins |
| 结构域编号 domain_id | 2j1kB00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 10 — Immunoglobulins |
| 结构域编号 domain_id | 2j1kC00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) |
| 同源超家族 H-superfamily homologous superfamily | 10 — Adenovirus pIV-related, attachment domain |
| 结构域编号 domain_id | 2j1kD00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) |
| 同源超家族 H-superfamily homologous superfamily | 10 — Adenovirus pIV-related, attachment domain |
| 结构域编号 domain_id | 2j1kE00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) |
| 同源超家族 H-superfamily homologous superfamily | 10 — Adenovirus pIV-related, attachment domain |
| 结构域编号 domain_id | 2j1kF00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) |
| 同源超家族 H-superfamily homologous superfamily | 10 — Adenovirus pIV-related, attachment domain |
| 结构域编号 domain_id | 2j1kG00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 10 — Immunoglobulins |
| 结构域编号 domain_id | 2j1kH00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) |
| 同源超家族 H-superfamily homologous superfamily | 10 — Adenovirus pIV-related, attachment domain |
| 结构域编号 domain_id | 2j1kI00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) |
| 同源超家族 H-superfamily homologous superfamily | 10 — Adenovirus pIV-related, attachment domain |
| 结构域编号 domain_id | 2j1kJ00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 10 — Immunoglobulins |
| 结构域编号 domain_id | 2j1kK00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 10 — Immunoglobulins |
| 结构域编号 domain_id | 2j1kL00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) |
| 同源超家族 H-superfamily homologous superfamily | 10 — Adenovirus pIV-related, attachment domain |
| 结构域编号 domain_id | 2j1kM00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) |
| 同源超家族 H-superfamily homologous superfamily | 10 — Adenovirus pIV-related, attachment domain |
| 结构域编号 domain_id | 2j1kN00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) |
| 同源超家族 H-superfamily homologous superfamily | 10 — Adenovirus pIV-related, attachment domain |
| 结构域编号 domain_id | 2j1kO00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 10 — Immunoglobulins |
| 结构域编号 domain_id | 2j1kP00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 10 — Immunoglobulins |
| 结构域编号 domain_id | 2j1kQ00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) |
| 同源超家族 H-superfamily homologous superfamily | 10 — Adenovirus pIV-related, attachment domain |
| 结构域编号 domain_id | 2j1kR00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) |
| 同源超家族 H-superfamily homologous superfamily | 10 — Adenovirus pIV-related, attachment domain |
| 结构域编号 domain_id | 2j1kS00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) |
| 同源超家族 H-superfamily homologous superfamily | 10 — Adenovirus pIV-related, attachment domain |
| 结构域编号 domain_id | 2j1kT00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 10 — Immunoglobulins |
| 结构域编号 domain_id | 2j1kV00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 10 — Immunoglobulins |
| 结构域编号 domain_id | 2j1kX00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 10 — Immunoglobulins |
| 结构域编号 domain_id | 2j1kY00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 10 — Immunoglobulins |
| 结构域编号 domain_id | 2j1kZ00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 10 — Immunoglobulins |