2j1k

CAV-2 fibre head in complex with CAR D1

Method: X-RAY DIFFRACTION Dmax: 201.5 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

COXSACKIEVIRUS AND ADENOVIRUS RECEPTOR

HOMO SAPIENS

UniProt P78310

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 6 PDB declaration: hexameric(6) Consistent with protein copy count Chain J; UniProt 15–140 Chain P; UniProt 15–140 Chain T; UniProt 15–140 Fragment:D1 DOMAIN, RESIDUES 15-140 FIBER PROTEIN × 3 (Q65914) X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 2.30 Å R-free 0.220
2 Protein heterocomplex Heteromer Protein × 6 PDB declaration: hexameric(6) Consistent with protein copy count Chain B; UniProt 15–140 Chain K; UniProt 15–140 Chain O; UniProt 15–140 Fragment:D1 DOMAIN, RESIDUES 15-140 FIBER PROTEIN × 3 (Q65914) X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 2.30 Å R-free 0.220
3 Protein heterocomplex Heteromer Protein × 6 PDB declaration: hexameric(6) Consistent with protein copy count Chain V; UniProt 15–140 Chain X; UniProt 15–140 Chain Y; UniProt 15–140 Fragment:D1 DOMAIN, RESIDUES 15-140 FIBER PROTEIN × 3 (Q65914) X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 2.30 Å R-free 0.220
4 Protein heterocomplex Heteromer Protein × 6 PDB declaration: hexameric(6) Consistent with protein copy count Chain A; UniProt 15–140 Chain G; UniProt 15–140 Chain Z; UniProt 15–140 Fragment:D1 DOMAIN, RESIDUES 15-140 FIBER PROTEIN × 3 (Q65914) X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 2.30 Å R-free 0.220

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

20 other PDB entries and 64 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name CXAR_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 3–128; UniProt 15–140 Author chain B; PDBConstruct 3–128; UniProt 15–140 Author chain G; PDBConstruct 3–128; UniProt 15–140 Author chain J; PDBConstruct 3–128; UniProt 15–140 Author chain K; PDBConstruct 3–128; UniProt 15–140 Author chain O; PDBConstruct 3–128; UniProt 15–140 Author chain P; PDBConstruct 3–128; UniProt 15–140 Author chain T; PDBConstruct 3–128; UniProt 15–140 Author chain V; PDBConstruct 3–128; UniProt 15–140 Author chain X; PDBConstruct 3–128; UniProt 15–140 Author chain Y; PDBConstruct 3–128; UniProt 15–140 Author chain Z; PDBConstruct 3–128; UniProt 15–140

FIBER PROTEIN

CANINE ADENOVIRUS 2

UniProt Q65914

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 6 PDB declaration: hexameric(6) Consistent with protein copy count Chain C; UniProt 358–542 Chain H; UniProt 358–542 Chain I; UniProt 358–542 Fragment:FIBRE HEAD DOMAIN, RESIDUES 358-542 COXSACKIEVIRUS AND ADENOVIRUS RECEPTOR × 3 (P78310) X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 2.30 Å R-free 0.220
2 Protein heterocomplex Heteromer Protein × 6 PDB declaration: hexameric(6) Consistent with protein copy count Chain D; UniProt 358–542 Chain E; UniProt 358–542 Chain F; UniProt 358–542 Fragment:FIBRE HEAD DOMAIN, RESIDUES 358-542 COXSACKIEVIRUS AND ADENOVIRUS RECEPTOR × 3 (P78310) X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 2.30 Å R-free 0.220
3 Protein heterocomplex Heteromer Protein × 6 PDB declaration: hexameric(6) Consistent with protein copy count Chain L; UniProt 358–542 Chain M; UniProt 358–542 Chain N; UniProt 358–542 Fragment:FIBRE HEAD DOMAIN, RESIDUES 358-542 COXSACKIEVIRUS AND ADENOVIRUS RECEPTOR × 3 (P78310) X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 2.30 Å R-free 0.220
4 Protein heterocomplex Heteromer Protein × 6 PDB declaration: hexameric(6) Consistent with protein copy count Chain Q; UniProt 358–542 Chain R; UniProt 358–542 Chain S; UniProt 358–542 Fragment:FIBRE HEAD DOMAIN, RESIDUES 358-542 COXSACKIEVIRUS AND ADENOVIRUS RECEPTOR × 3 (P78310) X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 2.30 Å R-free 0.220

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

3 other PDB entries and 8 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name FIBP_ADECT
Isoform
PDB entities 2
Chains and sequence ranges Author chain C; PDBConstruct 13–197; UniProt 358–542 Author chain D; PDBConstruct 13–197; UniProt 358–542 Author chain E; PDBConstruct 13–197; UniProt 358–542 Author chain F; PDBConstruct 13–197; UniProt 358–542 Author chain H; PDBConstruct 13–197; UniProt 358–542 Author chain I; PDBConstruct 13–197; UniProt 358–542 Author chain L; PDBConstruct 13–197; UniProt 358–542 Author chain M; PDBConstruct 13–197; UniProt 358–542 Author chain N; PDBConstruct 13–197; UniProt 358–542 Author chain Q; PDBConstruct 13–197; UniProt 358–542 Author chain R; PDBConstruct 13–197; UniProt 358–542 Author chain S; PDBConstruct 13–197; UniProt 358–542

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 2j1k

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 2j1k
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2. Structure Basics 2. Structure Basics

Entry ID entry_id2j1k
Deposition date deposition_date2006-08-14
Structure title titleCAV-2 fibre head in complex with CAR D1
Keywords keywords;VIRUS-RECEPTOR COMPLEX, COMPLEX, MEMBRANE, RECEPTOR, PALMITATE, DOMAIN D1, IMMUNOGLOBULIN DOMAIN, HOST-VIRUS INTERACTION, GLYCOPROTEIN, FIBER PROTEIN, CELL ADHESION, PHOSPHORYLATION, TRANSMEMBRANE, TIGHT JUNCTION, COXSACKIEVIRUS, FIBER HEAD, ADENOVIRUS, FIBRE HEAD, LIPOPROTEIN, CAR, KNOB, FIBER, FIBRE, CAV-2, CANINE ;; VIRUS/RECEPTOR
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier58.46
Radius of gyration Rg (electron density) rg_electron58.78
Forward intensity I(0) i02213870000.00
Molecular weight molecular_weight399450.0 kDa
Excluded volume excluded_volume501760 ų
Envelope volume envelope_volume696720 ų
Hydration-shell volume shell_volume102860 ų
Envelope diameter envelope_diameter212.3
Shell Rg shell_rg57.60
Envelope Rg envelope_rg57.77
Shape Rg shape_rg58.77
Total Rg total_rg58.77
Total atoms total_atoms28097
Residues n_residues3623
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax201.5
Rg (real space) rg_real58.71
Rg uncertainty (real space) rg_real_error2.97
I(0) (real space) i0_real2.2140e+09
I(0) uncertainty (real space) i0_real_error4.8310e+07
Rg (reciprocal space) rg_reciprocal58.23
I(0) (reciprocal space) i0_reciprocal2212000000.0000
Solution quality estimate total_estimate0.8541
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary67.2
Skewness Skewness skewness0.454
Kurtosis Kurtosis kurtosis-0.249
Angular range angular_range— – 0.1350 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha131300000.0000
Real-space data points n_real_points28
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.830; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.972; Smooth: 0.642

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 48 domains

SCOP 2.08 (24 domains)

Domain ID domain_idd2j1ka_
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.1 — Immunoglobulin
Family Family familyb.1.1.1 — V set domains (antibody variable domain-like)
Domain ID domain_idd2j1kb_
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.1 — Immunoglobulin
Family Family familyb.1.1.1 — V set domains (antibody variable domain-like)
Domain ID domain_idd2j1kc1
Class classb — All beta proteins
Fold Fold foldb.21 — Virus attachment protein globular domain
Superfamily Superfamily superfamilyb.21.1 — Virus attachment protein globular domain
Family Family familyb.21.1.1 — Adenovirus fiber protein 'knob' domain
Domain ID domain_idd2j1kd_
Class classb — All beta proteins
Fold Fold foldb.21 — Virus attachment protein globular domain
Superfamily Superfamily superfamilyb.21.1 — Virus attachment protein globular domain
Family Family familyb.21.1.1 — Adenovirus fiber protein 'knob' domain
Domain ID domain_idd2j1ke_
Class classb — All beta proteins
Fold Fold foldb.21 — Virus attachment protein globular domain
Superfamily Superfamily superfamilyb.21.1 — Virus attachment protein globular domain
Family Family familyb.21.1.1 — Adenovirus fiber protein 'knob' domain
Domain ID domain_idd2j1kf_
Class classb — All beta proteins
Fold Fold foldb.21 — Virus attachment protein globular domain
Superfamily Superfamily superfamilyb.21.1 — Virus attachment protein globular domain
Family Family familyb.21.1.1 — Adenovirus fiber protein 'knob' domain
Domain ID domain_idd2j1kg_
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.1 — Immunoglobulin
Family Family familyb.1.1.1 — V set domains (antibody variable domain-like)
Domain ID domain_idd2j1kh_
Class classb — All beta proteins
Fold Fold foldb.21 — Virus attachment protein globular domain
Superfamily Superfamily superfamilyb.21.1 — Virus attachment protein globular domain
Family Family familyb.21.1.1 — Adenovirus fiber protein 'knob' domain
Domain ID domain_idd2j1ki_
Class classb — All beta proteins
Fold Fold foldb.21 — Virus attachment protein globular domain
Superfamily Superfamily superfamilyb.21.1 — Virus attachment protein globular domain
Family Family familyb.21.1.1 — Adenovirus fiber protein 'knob' domain
Domain ID domain_idd2j1kj_
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.1 — Immunoglobulin
Family Family familyb.1.1.1 — V set domains (antibody variable domain-like)
Domain ID domain_idd2j1kk_
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.1 — Immunoglobulin
Family Family familyb.1.1.1 — V set domains (antibody variable domain-like)
Domain ID domain_idd2j1kl_
Class classb — All beta proteins
Fold Fold foldb.21 — Virus attachment protein globular domain
Superfamily Superfamily superfamilyb.21.1 — Virus attachment protein globular domain
Family Family familyb.21.1.1 — Adenovirus fiber protein 'knob' domain
Domain ID domain_idd2j1km_
Class classb — All beta proteins
Fold Fold foldb.21 — Virus attachment protein globular domain
Superfamily Superfamily superfamilyb.21.1 — Virus attachment protein globular domain
Family Family familyb.21.1.1 — Adenovirus fiber protein 'knob' domain
Domain ID domain_idd2j1kn_
Class classb — All beta proteins
Fold Fold foldb.21 — Virus attachment protein globular domain
Superfamily Superfamily superfamilyb.21.1 — Virus attachment protein globular domain
Family Family familyb.21.1.1 — Adenovirus fiber protein 'knob' domain
Domain ID domain_idd2j1ko_
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.1 — Immunoglobulin
Family Family familyb.1.1.1 — V set domains (antibody variable domain-like)
Domain ID domain_idd2j1kp_
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.1 — Immunoglobulin
Family Family familyb.1.1.1 — V set domains (antibody variable domain-like)
Domain ID domain_idd2j1kq_
Class classb — All beta proteins
Fold Fold foldb.21 — Virus attachment protein globular domain
Superfamily Superfamily superfamilyb.21.1 — Virus attachment protein globular domain
Family Family familyb.21.1.1 — Adenovirus fiber protein 'knob' domain
Domain ID domain_idd2j1kr_
Class classb — All beta proteins
Fold Fold foldb.21 — Virus attachment protein globular domain
Superfamily Superfamily superfamilyb.21.1 — Virus attachment protein globular domain
Family Family familyb.21.1.1 — Adenovirus fiber protein 'knob' domain
Domain ID domain_idd2j1ks_
Class classb — All beta proteins
Fold Fold foldb.21 — Virus attachment protein globular domain
Superfamily Superfamily superfamilyb.21.1 — Virus attachment protein globular domain
Family Family familyb.21.1.1 — Adenovirus fiber protein 'knob' domain
Domain ID domain_idd2j1kt_
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.1 — Immunoglobulin
Family Family familyb.1.1.1 — V set domains (antibody variable domain-like)
Domain ID domain_idd2j1kv_
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.1 — Immunoglobulin
Family Family familyb.1.1.1 — V set domains (antibody variable domain-like)
Domain ID domain_idd2j1kx_
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.1 — Immunoglobulin
Family Family familyb.1.1.1 — V set domains (antibody variable domain-like)
Domain ID domain_idd2j1ky_
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.1 — Immunoglobulin
Family Family familyb.1.1.1 — V set domains (antibody variable domain-like)
Domain ID domain_idd2j1kz_
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.1 — Immunoglobulin
Family Family familyb.1.1.1 — V set domains (antibody variable domain-like)

CATH v4.4 (24 domains)

Domain ID domain_id2j1kA00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id2j1kB00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id2j1kC00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)
Homologous superfamily homologous superfamily10 — Adenovirus pIV-related, attachment domain
Domain ID domain_id2j1kD00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)
Homologous superfamily homologous superfamily10 — Adenovirus pIV-related, attachment domain
Domain ID domain_id2j1kE00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)
Homologous superfamily homologous superfamily10 — Adenovirus pIV-related, attachment domain
Domain ID domain_id2j1kF00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)
Homologous superfamily homologous superfamily10 — Adenovirus pIV-related, attachment domain
Domain ID domain_id2j1kG00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id2j1kH00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)
Homologous superfamily homologous superfamily10 — Adenovirus pIV-related, attachment domain
Domain ID domain_id2j1kI00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)
Homologous superfamily homologous superfamily10 — Adenovirus pIV-related, attachment domain
Domain ID domain_id2j1kJ00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id2j1kK00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id2j1kL00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)
Homologous superfamily homologous superfamily10 — Adenovirus pIV-related, attachment domain
Domain ID domain_id2j1kM00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)
Homologous superfamily homologous superfamily10 — Adenovirus pIV-related, attachment domain
Domain ID domain_id2j1kN00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)
Homologous superfamily homologous superfamily10 — Adenovirus pIV-related, attachment domain
Domain ID domain_id2j1kO00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id2j1kP00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id2j1kQ00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)
Homologous superfamily homologous superfamily10 — Adenovirus pIV-related, attachment domain
Domain ID domain_id2j1kR00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)
Homologous superfamily homologous superfamily10 — Adenovirus pIV-related, attachment domain
Domain ID domain_id2j1kS00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)
Homologous superfamily homologous superfamily10 — Adenovirus pIV-related, attachment domain
Domain ID domain_id2j1kT00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id2j1kV00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id2j1kX00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id2j1kY00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id2j1kZ00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins

8. Citations (1)

9. Files and Curves (10)