2j58

The structure of Wza

Method: X-RAY DIFFRACTION

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1. 蛋白身份与相关结构 Protein Identity & Related Structures

OUTER MEMBRANE LIPOPROTEIN WZA

ESCHERICHIA COLI

当前结构中的状态

Assembly	物理组成	蛋白状态	分子拷贝数	共同组分	数据核对
1	蛋白同源多聚体	同源多聚体	蛋白 8	N-OCTANE × 8 HEXANE × 8 SULFATE ION × 16 water × 8	与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据

UniProt名称	Q9X4B7_ECOLI
Isoform	—
PDB实体	1
链与序列区间	作者链 A； PDB构建体 1–359； UniProt 21–379 作者链 B； PDB构建体 1–359； UniProt 21–379 作者链 C； PDB构建体 1–359； UniProt 21–379 作者链 D； PDB构建体 1–359； UniProt 21–379 作者链 E； PDB构建体 1–359； UniProt 21–379 作者链 F； PDB构建体 1–359； UniProt 21–379 作者链 G； PDB构建体 1–359； UniProt 21–379 作者链 H； PDB构建体 1–359； UniProt 21–379

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。链映射与序列区间收在“数据证据”中；数据库内部编号、导入时间和 assembly 操作表达式仅用于维护，因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id	2j58
沉积日期 deposition_date	2006-09-12
结构标题 title	The structure of Wza
关键词 keywords	MEMBRANE PROTEIN; MEMBRANE PROTEIN
实验方法 method	X-RAY DIFFRACTION

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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

2j58__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

2j58__assembly_1__model_1 | I(q)

100 个绘图点；横轴和纵轴均采用对数尺度。

2j58__assembly_1__model_1 | P(r) · Pending

P(r) 将按相同 assembly/model 分别计算和展示。

Rg（Guinier）	44.42 Å
Rg（电子密度）	44.17 Å
总 Rg	44.28 Å
原子数	22232
残基数	2760
排除体积	398110 Å³
最大 q	0.500 Å⁻¹

Assembly	Model	结构单元	聚集说明	状态	CRYSOL	操作
1	1	`2j58__assembly_1__model_1`	octameric （8）	成功	4.1.3-1-20251215 (887e7ef)	查看下载

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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (5)

实体 1 Entity 1 polymer

描述 description	OUTER MEMBRANE LIPOPROTEIN WZA
分子量 formula_weight	40100.8 kDa
来源方法 src_method	man
拷贝数 entity_count	8

聚合物 Polymer

聚合物类型 type	polypeptide(L)
链编号 strand_id	A,B,C,D,E,F,G,H
原子数 atom_count	23866

XTIIPGQGLNSLRKNVVELPDSDYDLDKLVNVYPMTPGLIDQLRPEPVIARSNPQLDNLLKSYEYRIGVGDVLMVTVWDHPELTTPAGQYRSASDTGNWVNSDGTIFYPYIGKVQVAGKTVSQVRQDITSRLTTYIESPQVDVSIAAFRSQKVYVTGEVANSGKQAITNIPLTVMDAINAAGGLAADADWRNVVLTHNGKDTKISLYALMQKGDLTQNHLLYHGDILFIPSNDDLKVFVMGEVGKQSTLKMDRSGMTLAEALGNAEGISQEMSDATGIFVVRQLKGDRTGKIADIYQLNAQDASAMVLGTEFQLQPYDIVYVTTAPLVRWNRVISQLVPTISGVHDMTETVRYIKRWPN

来源 Source

来源生物 organism	ESCHERICHIA COLI
NCBI 分类编号 ncbi_taxonomy_id	562
宿主生物 host_organism	ESCHERICHIA COLI

实体 2 Entity 2 non-polymer

描述 description	N-OCTANE
分子量 formula_weight	114.2 kDa
来源方法 src_method	syn
拷贝数 entity_count	8

实体 3 Entity 3 non-polymer

描述 description	HEXANE
分子量 formula_weight	86.2 kDa
来源方法 src_method	syn
拷贝数 entity_count	8

实体 4 Entity 4 non-polymer

描述 description	SULFATE ION
分子量 formula_weight	96.1 kDa
来源方法 src_method	syn
拷贝数 entity_count	16

实体 5 Entity 5 water

描述 description	water
分子量 formula_weight	18.0 kDa
来源方法 src_method	nat
拷贝数 entity_count	1634

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6. 折叠分类 (SCOP + CATH) 32 domains

CATH v4.4 (32 domains)

结构域编号 domain_id	2j58A01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	10 — Roll
拓扑 Topology topology	560 — Outer membrane lipoprotein wza fold like
同源超家族 H-superfamily homologous superfamily	10 — Outer membrane lipoprotein wza domain like

结构域编号 domain_id	2j58A02
类 Class class	3 — Alpha Beta
架构 Architecture architecture	10 — Roll
拓扑 Topology topology	560 — Outer membrane lipoprotein wza fold like
同源超家族 H-superfamily homologous superfamily	10 — Outer membrane lipoprotein wza domain like

结构域编号 domain_id	2j58A03
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1950 — wza like fold
同源超家族 H-superfamily homologous superfamily	10 — wza like domain

结构域编号 domain_id	2j58A04
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
同源超家族 H-superfamily homologous superfamily	70 —

结构域编号 domain_id	2j58B01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	10 — Roll
拓扑 Topology topology	560 — Outer membrane lipoprotein wza fold like
同源超家族 H-superfamily homologous superfamily	10 — Outer membrane lipoprotein wza domain like

结构域编号 domain_id	2j58B02
类 Class class	3 — Alpha Beta
架构 Architecture architecture	10 — Roll
拓扑 Topology topology	560 — Outer membrane lipoprotein wza fold like
同源超家族 H-superfamily homologous superfamily	10 — Outer membrane lipoprotein wza domain like

结构域编号 domain_id	2j58B03
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1950 — wza like fold
同源超家族 H-superfamily homologous superfamily	10 — wza like domain

结构域编号 domain_id	2j58B04
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
同源超家族 H-superfamily homologous superfamily	70 —

结构域编号 domain_id	2j58C01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	10 — Roll
拓扑 Topology topology	560 — Outer membrane lipoprotein wza fold like
同源超家族 H-superfamily homologous superfamily	10 — Outer membrane lipoprotein wza domain like

结构域编号 domain_id	2j58C02
类 Class class	3 — Alpha Beta
架构 Architecture architecture	10 — Roll
拓扑 Topology topology	560 — Outer membrane lipoprotein wza fold like
同源超家族 H-superfamily homologous superfamily	10 — Outer membrane lipoprotein wza domain like

结构域编号 domain_id	2j58C03
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1950 — wza like fold
同源超家族 H-superfamily homologous superfamily	10 — wza like domain

结构域编号 domain_id	2j58C04
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
同源超家族 H-superfamily homologous superfamily	70 —

结构域编号 domain_id	2j58D01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	10 — Roll
拓扑 Topology topology	560 — Outer membrane lipoprotein wza fold like
同源超家族 H-superfamily homologous superfamily	10 — Outer membrane lipoprotein wza domain like

结构域编号 domain_id	2j58D02
类 Class class	3 — Alpha Beta
架构 Architecture architecture	10 — Roll
拓扑 Topology topology	560 — Outer membrane lipoprotein wza fold like
同源超家族 H-superfamily homologous superfamily	10 — Outer membrane lipoprotein wza domain like

结构域编号 domain_id	2j58D03
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1950 — wza like fold
同源超家族 H-superfamily homologous superfamily	10 — wza like domain

结构域编号 domain_id	2j58D04
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
同源超家族 H-superfamily homologous superfamily	70 —

结构域编号 domain_id	2j58E01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	10 — Roll
拓扑 Topology topology	560 — Outer membrane lipoprotein wza fold like
同源超家族 H-superfamily homologous superfamily	10 — Outer membrane lipoprotein wza domain like

结构域编号 domain_id	2j58E02
类 Class class	3 — Alpha Beta
架构 Architecture architecture	10 — Roll
拓扑 Topology topology	560 — Outer membrane lipoprotein wza fold like
同源超家族 H-superfamily homologous superfamily	10 — Outer membrane lipoprotein wza domain like

结构域编号 domain_id	2j58E03
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1950 — wza like fold
同源超家族 H-superfamily homologous superfamily	10 — wza like domain

结构域编号 domain_id	2j58E04
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
同源超家族 H-superfamily homologous superfamily	70 —

结构域编号 domain_id	2j58F01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	10 — Roll
拓扑 Topology topology	560 — Outer membrane lipoprotein wza fold like
同源超家族 H-superfamily homologous superfamily	10 — Outer membrane lipoprotein wza domain like

结构域编号 domain_id	2j58F02
类 Class class	3 — Alpha Beta
架构 Architecture architecture	10 — Roll
拓扑 Topology topology	560 — Outer membrane lipoprotein wza fold like
同源超家族 H-superfamily homologous superfamily	10 — Outer membrane lipoprotein wza domain like

结构域编号 domain_id	2j58F03
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1950 — wza like fold
同源超家族 H-superfamily homologous superfamily	10 — wza like domain

结构域编号 domain_id	2j58F04
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
同源超家族 H-superfamily homologous superfamily	70 —

结构域编号 domain_id	2j58G01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	10 — Roll
拓扑 Topology topology	560 — Outer membrane lipoprotein wza fold like
同源超家族 H-superfamily homologous superfamily	10 — Outer membrane lipoprotein wza domain like

结构域编号 domain_id	2j58G02
类 Class class	3 — Alpha Beta
架构 Architecture architecture	10 — Roll
拓扑 Topology topology	560 — Outer membrane lipoprotein wza fold like
同源超家族 H-superfamily homologous superfamily	10 — Outer membrane lipoprotein wza domain like

结构域编号 domain_id	2j58G03
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1950 — wza like fold
同源超家族 H-superfamily homologous superfamily	10 — wza like domain

结构域编号 domain_id	2j58G04
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
同源超家族 H-superfamily homologous superfamily	70 —

结构域编号 domain_id	2j58H01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	10 — Roll
拓扑 Topology topology	560 — Outer membrane lipoprotein wza fold like
同源超家族 H-superfamily homologous superfamily	10 — Outer membrane lipoprotein wza domain like

结构域编号 domain_id	2j58H02
类 Class class	3 — Alpha Beta
架构 Architecture architecture	10 — Roll
拓扑 Topology topology	560 — Outer membrane lipoprotein wza fold like
同源超家族 H-superfamily homologous superfamily	10 — Outer membrane lipoprotein wza domain like

结构域编号 domain_id	2j58H03
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1950 — wza like fold
同源超家族 H-superfamily homologous superfamily	10 — wza like domain

结构域编号 domain_id	2j58H04
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
同源超家族 H-superfamily homologous superfamily	70 —

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晶胞边长 a length_a	94.719 Å
晶胞边长 b length_b	215.268 Å
晶胞边长 c length_c	220.892 Å
晶胞夹角 α angle_alpha	90.00 °
晶胞夹角 β angle_beta	90.00 °
晶胞夹角 γ angle_gamma	90.00 °
晶胞分子数 Z z_pdb	32

空间群 space_group	P 21 21 21
空间群编号 int_tables_number	19
晶系 crystal_system	—

分辨率 resolution	2.250 Å
最低分辨率 resolution_low	107.830 Å
R 因子 r_factor	0.1900
R_work r_work	0.1880
R_free r_free	0.2260

The structure of Wza

1. 蛋白身份与相关结构 Protein Identity & Related Structures

OUTER MEMBRANE LIPOPROTEIN WZA

当前结构中的状态

数据库中的同蛋白其他状态

2. 结构基本信息 2. Structure Basics

3. Official assembly/model 理论 SAXS Official SAXS Profiles

2j58__assembly_1__model_1

2j58__assembly_1__model_1 | I(q)

2j58__assembly_1__model_1 | P(r) · Pending

4. 晶体学与实验 4. Crystallography & Experiment

晶胞参数 Unit Cell

对称性 Symmetry

精修参数 Refinement

衍射实验 Diffraction

5. 实体与聚合物信息 Entities & Polymers (5)

实体 1 Entity 1 polymer

聚合物 Polymer

来源 Source

实体 2 Entity 2 non-polymer

实体 3 Entity 3 non-polymer

实体 4 Entity 4 non-polymer

实体 5 Entity 5 water

6. 折叠分类 (SCOP + CATH) 32 domains

CATH v4.4 (32 domains)

7. 引用文献 (1)

The structure of Wza

1. 蛋白身份与相关结构 Protein Identity & Related Structures

OUTER MEMBRANE LIPOPROTEIN WZA

当前结构中的状态

数据库中的同蛋白其他状态

单体

同源二聚体

同源四聚体

其他同源多聚体

异源或核酸复合物

2. 结构基本信息 2. Structure Basics

3. Official assembly/model 理论 SAXS Official SAXS Profiles

2j58__assembly_1__model_1

2j58__assembly_1__model_1 | I(q)

2j58__assembly_1__model_1 | P(r) · Pending

4. 晶体学与实验 4. Crystallography & Experiment

晶胞参数 Unit Cell

对称性 Symmetry

精修参数 Refinement

衍射实验 Diffraction

5. 实体与聚合物信息 Entities & Polymers (5)

实体 1 Entity 1 polymer

聚合物 Polymer

来源 Source

实体 2 Entity 2 non-polymer

实体 3 Entity 3 non-polymer

实体 4 Entity 4 non-polymer

实体 5 Entity 5 water

6. 折叠分类 (SCOP + CATH) 32 domains

CATH v4.4 (32 domains)

7. 引用文献 (1)