2le7

Solution nmr structure of the S4S5 linker of herg potassium channel

Method: SOLUTION NMR Dmax: 29.1 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Potassium voltage-gated channel subfamily H member 2

OrganismNot specified

UniProt Q12809

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 532–551 Fragment:residues 532-551 No other associated polymer SOLUTION NMR NMR measurement conditions:pH 6.6;300 K;Pressure AMBIENT NMR sample composition:100mM DPC-1, 90%(v/v) H2O-2, 10%(v/v) [U-2H] D2O-3, 90% H2O/10% D2O | 90% H2O/10% D2O Resolution not provided

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

20 other PDB entries and 26 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name KCNH2_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–20; UniProt 532–551

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 2le7

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 2le7
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2. Structure Basics 2. Structure Basics

Entry ID entry_id2le7
Deposition date deposition_date2011-06-13
Structure title titleSolution nmr structure of the S4S5 linker of herg potassium channel
Keywords keywordsHERG, S4S5, VOLTAGE-GATED POTASSIUM CHANNEL, MEMBRANE PROTEIN, TRANSPORT PROTEIN; TRANSPORT PROTEIN
Experimental Method methodSOLUTION NMR

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier8.10
Radius of gyration Rg (electron density) rg_electron8.66
Forward intensity I(0) i027021300.00
Molecular weight molecular_weight46575.0 kDa
Excluded volume excluded_volume59773 ų
Envelope volume envelope_volume5030 ų
Hydration-shell volume shell_volume5074 ų
Envelope diameter envelope_diameter33.2
Shell Rg shell_rg13.83
Envelope Rg envelope_rg9.94
Shape Rg shape_rg8.62
Total Rg total_rg9.04
Total atoms total_atoms6780
Residues n_residues400
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax29.1
Rg (real space) rg_real8.20
Rg uncertainty (real space) rg_real_error0.39
I(0) (real space) i0_real2.7020e+07
I(0) uncertainty (real space) i0_real_error2.9250e+05
Rg (reciprocal space) rg_reciprocal8.20
I(0) (reciprocal space) i0_reciprocal27020000.0000
Solution quality estimate total_estimate0.7399
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary7.7
Skewness Skewness skewness0.392
Kurtosis Kurtosis kurtosis-0.603
Angular range angular_range— – 0.5000 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha1637.0000
Real-space data points n_real_points80
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.762; Stabil: 0.995; Sysdev: 1.000; Positv: 1.000; Valcen: 0.344; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (1)

8. Citations (1)

9. Files and Curves (10)