2n7g

Structure of the cyclic nucleotide-binding homology domain of the hERG channel

Method: SOLUTION NMR Dmax: 54.7 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Potassium voltage-gated channel subfamily H member 2

Homo sapiens

UniProt Q12809

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 734–864 Fragment:UNP residues 734-869 No other associated polymer SOLUTION NMR NMR measurement conditions:pH 7.2;298 K;Ionic strength (raw mmCIF value) 170;Pressure ambient NMR sample composition:0.4 mM [U-100% 13C; U-100% 15N] the cyclic nucleotide-binding homology domain of the hERG channel-1, 20 mM sodium phosphate-2, 150 mM sodium chloride-3, 1 mM DTT-4, 90% H2O/10% D2O | 90% H2O/10% D2O Resolution not provided

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

20 other PDB entries and 26 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name KCNH2_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 24–154; UniProt 734–864

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 2n7g

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 2n7g
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2. Structure Basics 2. Structure Basics

Entry ID entry_id2n7g
Deposition date deposition_date2015-09-10
Structure title titleStructure of the cyclic nucleotide-binding homology domain of the hERG channel
Keywords keywordshERG, CNBHD, ion channel, LQTS2, MEMBRANE PROTEIN; MEMBRANE PROTEIN
Experimental Method methodSOLUTION NMR

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier15.38
Radius of gyration Rg (electron density) rg_electron14.88
Forward intensity I(0) i01156130000.00
Molecular weight molecular_weight294220.0 kDa
Excluded volume excluded_volume370480 ų
Envelope volume envelope_volume34543 ų
Hydration-shell volume shell_volume16943 ų
Envelope diameter envelope_diameter61.3
Shell Rg shell_rg23.30
Envelope Rg envelope_rg17.55
Shape Rg shape_rg14.82
Total Rg total_rg15.21
Total atoms total_atoms41520
Residues n_residues2620
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax54.7
Rg (real space) rg_real15.30
Rg uncertainty (real space) rg_real_error0.37
I(0) (real space) i0_real1.1560e+09
I(0) uncertainty (real space) i0_real_error1.3770e+07
Rg (reciprocal space) rg_reciprocal15.31
I(0) (reciprocal space) i0_reciprocal1156000000.0000
Solution quality estimate total_estimate0.8449
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary18.7
Skewness Skewness skewness0.134
Kurtosis Kurtosis kurtosis-0.343
Angular range angular_range— – 0.5000 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha310000.0000
Real-space data points n_real_points80
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.665; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.988; Smooth: 0.997

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (1)

7. Fold Classification (SCOP + CATH) 1 domains

CATH v4.4 (1 domains)

Domain ID domain_id2n7gA00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology120 — Jelly Rolls
Homologous superfamily homologous superfamily10 — Jelly Rolls

8. Citations (1)

9. Files and Curves (10)