2lnh

Enterohaemorrhagic E. coli (EHEC) exploits a tryptophan switch to hijack host F-actin assembly

Method: SOLUTION NMR Dmax: 63.5 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Neural Wiskott-Aldrich syndrome protein

Homo sapiens

UniProt O00401

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 3 PDB declaration: trimeric(3) Consistent with protein copy count Chain A; UniProt 207–270 Fragment:UNP residues 207-270 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 × 1 (Q9UHR4) Secreted effector protein EspF(U) × 1 (P0DJ89) SOLUTION NMR NMR measurement conditions:pH 7;298 K;Ionic strength (raw mmCIF value) 50;Pressure ambient NMR sample composition:0.3 mM [U-98% 13C; U-98% 15N] protein_1, 0.3 mM protein_2, 0.3 mM protein_3, 93% H2O/7% D2O | 93% H2O/7% D2O NMR sample composition:0.5 mM protein_1, 0.5 mM [U-98% 13C; U-98% 15N] protein_2, 0.5 mM protein_3, 93% H2O/7% D2O | 93% H2O/7% D2O NMR sample composition:0.5 mM protein_1, 0.5 mM protein_2, 0.5 mM [U-98% 13C; U-98% 15N] protein_3, 93% H2O/7% D2O | 93% H2O/7% D2O Resolution not provided

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

7 other PDB entries and 15 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name WASL_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 2–65; UniProt 207–270

Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1

Homo sapiens

UniProt Q9UHR4

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 3 PDB declaration: trimeric(3) Consistent with protein copy count Chain B; UniProt 339–402 Fragment:SH3 domain residues 339-402 Neural Wiskott-Aldrich syndrome protein × 1 (O00401) Secreted effector protein EspF(U) × 1 (P0DJ89) SOLUTION NMR NMR measurement conditions:pH 7;298 K;Ionic strength (raw mmCIF value) 50;Pressure ambient NMR sample composition:0.3 mM [U-98% 13C; U-98% 15N] protein_1, 0.3 mM protein_2, 0.3 mM protein_3, 93% H2O/7% D2O | 93% H2O/7% D2O NMR sample composition:0.5 mM protein_1, 0.5 mM [U-98% 13C; U-98% 15N] protein_2, 0.5 mM protein_3, 93% H2O/7% D2O | 93% H2O/7% D2O NMR sample composition:0.5 mM protein_1, 0.5 mM protein_2, 0.5 mM [U-98% 13C; U-98% 15N] protein_3, 93% H2O/7% D2O | 93% H2O/7% D2O Resolution not provided

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name BI2L1_HUMAN
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 4–67; UniProt 339–402

Secreted effector protein EspF(U)

Escherichia coli O157:H7

UniProt P0DJ89

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 3 PDB declaration: trimeric(3) Consistent with protein copy count Chain C; UniProt 221–267 Fragment:UNP residues 221-267 Neural Wiskott-Aldrich syndrome protein × 1 (O00401) Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 × 1 (Q9UHR4) SOLUTION NMR NMR measurement conditions:pH 7;298 K;Ionic strength (raw mmCIF value) 50;Pressure ambient NMR sample composition:0.3 mM [U-98% 13C; U-98% 15N] protein_1, 0.3 mM protein_2, 0.3 mM protein_3, 93% H2O/7% D2O | 93% H2O/7% D2O NMR sample composition:0.5 mM protein_1, 0.5 mM [U-98% 13C; U-98% 15N] protein_2, 0.5 mM protein_3, 93% H2O/7% D2O | 93% H2O/7% D2O NMR sample composition:0.5 mM protein_1, 0.5 mM protein_2, 0.5 mM [U-98% 13C; U-98% 15N] protein_3, 93% H2O/7% D2O | 93% H2O/7% D2O Resolution not provided

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name ESFU3_ECO57
Isoform
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 2–48; UniProt 221–267

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 2lnh

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 2lnh
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2. Structure Basics 2. Structure Basics

Entry ID entry_id2lnh
Deposition date deposition_date2011-12-28
Structure title titleEnterohaemorrhagic E. coli (EHEC) exploits a tryptophan switch to hijack host F-actin assembly
Keywords keywordsProtein complex, Signaling Protein-Protein Binding complex; Signaling Protein/Protein Binding
Experimental Method methodSOLUTION NMR

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier23.99
Radius of gyration Rg (electron density) rg_electron23.60
Forward intensity I(0) i02276750000.00
Molecular weight molecular_weight399690.0 kDa
Excluded volume excluded_volume498520 ų
Envelope volume envelope_volume157170 ų
Hydration-shell volume shell_volume41142 ų
Envelope diameter envelope_diameter113.1
Shell Rg shell_rg38.36
Envelope Rg envelope_rg32.98
Shape Rg shape_rg23.64
Total Rg total_rg23.82
Total atoms total_atoms55640
Residues n_residues3580
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax63.5
Rg (real space) rg_real22.60
Rg uncertainty (real space) rg_real_error0.11
I(0) (real space) i0_real2.1690e+09
I(0) uncertainty (real space) i0_real_error2.0460e+07
Rg (reciprocal space) rg_reciprocal24.16
I(0) (reciprocal space) i0_reciprocal2277000000.0000
Solution quality estimate total_estimate0.6831
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary21.9
Skewness Skewness skewness0.288
Kurtosis Kurtosis kurtosis-0.661
Angular range angular_range— – 0.3300 −1
Current regularization parameter α current_alpha2.6620
Highest regularization parameter α highest_alpha6011000.0000
Real-space data points n_real_points65
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.001; Oscil: 0.987; Stabil: 0.984; Sysdev: 0.000; Positv: 1.000; Valcen: 0.969; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 5 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd2lnhb1
Class classb — All beta proteins
Fold Fold foldb.34 — SH3-like barrel
Superfamily Superfamily superfamilyb.34.2 — SH3-domain
Family Family familyb.34.2.1 — SH3-domain
Domain ID domain_idd2lnhb2
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags

CATH v4.4 (3 domains)

Domain ID domain_id2lnhA00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology810 — SerineThreonine-protein kinase PAK-alpha; Chain A
Homologous superfamily homologous superfamily10 — CRIB domain
Domain ID domain_id2lnhB00
Class class2 — Mainly Beta
Architecture architecture30 — Roll
Topology topology30 — SH3 type barrels.
Homologous superfamily homologous superfamily40 — SH3 Domains
Domain ID domain_id2lnhC00
Class class6 — Special
Architecture architecture10 — Helix non-globular
Topology topology250 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily3330 — TccP2/EspF(U)-like

8. Citations (1)

9. Files and Curves (10)