|
2KBW
Solution Structure of human Mcl-1 complexed with human Bid_BH3 peptide
Deposited 2008-12-09
|
Different construct
Different oligomeric state
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
163–326(164 aa)
Fragment:residues 167-326
|
Not recorded
|
No recorded non-water small molecule
|
SOLUTION NMR
NMR measurement conditions
pH 6.5;303 K;Ionic strength (raw mmCIF value) 20;Pressure ambient
NMR sample composition
0.5 mM [U-95% 15N] Mcl-1-1, 0.5 mM Bid_BH3-2, 20 mM HEPES-3, 1 mM DTT-4, 90% H2O/10% D2O | 90% H2O/10% D2O
NMR sample composition
0.5 mM Mcl-1-5, 0.5 mM [U-95% 15N] Bid_BH3-6, 20 mM HEPES-7, 1 mM DTT-8, 90% H2O/10% D2O | 90% H2O/10% D2O
NMR sample composition
0.5 mM [U-95% 13C; U-95% 15N] Mcl-1-9, 0.5 mM Bid_BH3-10, 20 mM HEPES-11, 1 mM DTT-12, 90% H2O/10% D2O | 90% H2O/10% D2O
NMR sample composition
0.5 mM [U-95% 13C; U-95% 15N] Mcl-1-13, 0.5 mM Bid_BH3-14, 20 mM HEPES-15, 1 mM DTT-16, 100 % [U-100% 2H] D2O-17, 100% D2O | 100% D2O
NMR sample composition
0.5 mM Mcl-1-18, 0.5 mM [U-95% 13C; U-95% 15N] Bid_BH3-19, 20 mM HEPES-20, 1 mM DTT-21, 90% H2O/10% D2O | 90% H2O/10% D2O
NMR sample composition
0.5 mM Mcl-1-22, 0.5 mM [U-95% 13C; U-95% 15N] Bid_BH3-23, 20 mM HEPES-24, 1 mM DTT-25, 100 % [U-100% 2H] D2O-26, 100% D2O | 100% D2O
NMR sample composition
0.4 mM [U-95% 15N] Mcl-1-27, 0.4 mM Bid_BH3-28, 20 mM HEPES-29, 1 mM DTT-30, 6 mg/mL Pf1 phage-31, 90% H2O/10% D2O | 90% H2O/10% D2O
NMR sample composition
0.4 mM Mcl-1-32, 0.4 mM [U-95% 15N] Bid_BH3-33, 20 mM HEPES-34, 1 mM DTT-35, 8 mg/mL Pf1 phage-36, 90% H2O/10% D2O | 90% H2O/10% D2O
|
Resolution not provided
|
|
2MHS
NMR Structure of human Mcl-1
Deposited 2013-12-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
171–327(157 aa)
Fragment:UNP residues 171-327
|
Mutation:C117S
|
No recorded non-water small molecule
|
SOLUTION NMR
NMR measurement conditions
pH 7.4;298 K;Ionic strength (raw mmCIF value) 0.3;Pressure ambient
NMR sample composition
0.7 mM [U-100% 13C; U-100% 15N] mcl-1, 95% H2O/5% D2O | 95% H2O/5% D2O
NMR sample composition
0.7 mM [U-5% 13C; U-100% 15N] mcl-1, 95% H2O/5% D2O | 95% H2O/5% D2O
|
Resolution not provided
|
|
2NL9
Crystal structure of the Mcl-1:Bim BH3 complex
Deposited 2006-10-19
|
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
209–327(119 aa)
Fragment:residues 171-208 and residues 209-327
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ZN ZINC ION × 7
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.75;298 K;0.2M zinc acetate, 0.2M imidazole, 2mM TCEP, pH 5.75, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.55 Å
R-free 0.203
|
|
2NL9
Crystal structure of the Mcl-1:Bim BH3 complex
Deposited 2006-10-19
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Heteromer;Protein × 8
PDB declaration: octameric
|
Chain A
209–327(119 aa)
Fragment:residues 171-208 and residues 209-327
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ZN ZINC ION × 28
CL CHLORIDE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.75;298 K;0.2M zinc acetate, 0.2M imidazole, 2mM TCEP, pH 5.75, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.55 Å
R-free 0.203
|
|
2NL9
Crystal structure of the Mcl-1:Bim BH3 complex
Deposited 2006-10-19
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Insufficient information
Heteromer;Protein × 8
PDB declaration: octameric
|
Chain A
209–327(119 aa)
Fragment:residues 171-208 and residues 209-327
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ZN ZINC ION × 28
CL CHLORIDE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.75;298 K;0.2M zinc acetate, 0.2M imidazole, 2mM TCEP, pH 5.75, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.55 Å
R-free 0.203
|
|
2PQK
X-ray crystal structure of human Mcl-1 in complex with Bim BH3
Deposited 2007-05-02
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
172–327(156 aa)
Fragment:residues 172-327
|
Not recorded
|
ZN ZINC ION × 3
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;298 K;0.2M zinc acetate, 0.1M imidazole, 20% PEG 3350, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.00 Å
R-free 0.229
|
|
2PQK
X-ray crystal structure of human Mcl-1 in complex with Bim BH3
Deposited 2007-05-02
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 8
PDB declaration: octameric
|
Chain A
172–327(156 aa)
Fragment:residues 172-327
|
Not recorded
|
ZN ZINC ION × 12
NA SODIUM ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;298 K;0.2M zinc acetate, 0.1M imidazole, 20% PEG 3350, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.00 Å
R-free 0.229
|
|
2PQK
X-ray crystal structure of human Mcl-1 in complex with Bim BH3
Deposited 2007-05-02
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 8
PDB declaration: octameric
|
Chain A
172–327(156 aa)
Fragment:residues 172-327
|
Not recorded
|
ZN ZINC ION × 12
NA SODIUM ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;298 K;0.2M zinc acetate, 0.1M imidazole, 20% PEG 3350, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.00 Å
R-free 0.229
|
|
2PQK
X-ray crystal structure of human Mcl-1 in complex with Bim BH3
Deposited 2007-05-02
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain A
172–327(156 aa)
Fragment:residues 172-327
|
Not recorded
|
ZN ZINC ION × 6
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;298 K;0.2M zinc acetate, 0.1M imidazole, 20% PEG 3350, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.00 Å
R-free 0.229
|
|
2PQK
X-ray crystal structure of human Mcl-1 in complex with Bim BH3
Deposited 2007-05-02
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 5
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain A
172–327(156 aa)
Fragment:residues 172-327
|
Not recorded
|
ZN ZINC ION × 6
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;298 K;0.2M zinc acetate, 0.1M imidazole, 20% PEG 3350, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.00 Å
R-free 0.229
|
|
2PQK
X-ray crystal structure of human Mcl-1 in complex with Bim BH3
Deposited 2007-05-02
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 6
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
172–327(156 aa)
Fragment:residues 172-327
|
Not recorded
|
ZN ZINC ION × 3
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;298 K;0.2M zinc acetate, 0.1M imidazole, 20% PEG 3350, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.00 Å
R-free 0.229
|
|
3D7V
Crystal structure of Mcl-1 in complex with an Mcl-1 selective BH3 ligand
Deposited 2008-05-22
|
Different construct
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
209–327(119 aa)
Fragment:Bcl-2 like domain, Myeloid Cell Leukemia 1
|
Not recorded
|
ZN ZINC ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.75;298 K;0.2M Zinc Acetate, 0.2M Imidazole, pH 5.75, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.03 Å
R-free 0.241
|
|
3IO9
BimL12Y in complex with Mcl-1
Deposited 2009-08-14
|
Different construct
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
209–327(119 aa)
Fragment:Fusion protein of mouse Mcl-1 residues 152-189 and human Mcl-1 residues 209-327
|
Not recorded
|
ZN ZINC ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.75;298 K;0.15M zinc acetate, 0.15 M imidizole, pH 5.75, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.40 Å
R-free 0.251
|
|
3KJ0
Mcl-1 in complex with Bim BH3 mutant I2dY
Deposited 2009-11-02
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
172–327(156 aa)
Fragment:(UNP 172-326)
|
Not recorded
|
TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;298 K;0.1 M Tris, 45% MPD, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.70 Å
R-free 0.224
|
|
3KJ1
Mcl-1 in complex with Bim BH3 mutant I2dA
Deposited 2009-11-02
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
172–327(156 aa)
Fragment:(UNP 172-322)
|
Not recorded
|
ZN ZINC ION × 5
ACT ACETATE ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;298 K;0.1 M Imidazole, 0.2 M Zinc Acetate, 16% PEG 400, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.95 Å
R-free 0.213
|
|
3KJ1
Mcl-1 in complex with Bim BH3 mutant I2dA
Deposited 2009-11-02
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 8
PDB declaration: octameric
|
Chain A
172–327(156 aa)
Fragment:(UNP 172-322)
|
Not recorded
|
ZN ZINC ION × 20
ACT ACETATE ION × 4
CL CHLORIDE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;298 K;0.1 M Imidazole, 0.2 M Zinc Acetate, 16% PEG 400, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.95 Å
R-free 0.213
|
|
3KJ2
Mcl-1 in complex with Bim BH3 mutant F4aE
Deposited 2009-11-02
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
172–327(156 aa)
Fragment:(UNP 172-322)
|
Not recorded
|
ZN ZINC ION × 4
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;298 K;0.1 M Imidazole, 0.2 M Zinc Acetate, 2% PEG 3350, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.35 Å
R-free 0.247
|
|
3KJ2
Mcl-1 in complex with Bim BH3 mutant F4aE
Deposited 2009-11-02
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 8
PDB declaration: octameric
|
Chain A
172–327(156 aa)
Fragment:(UNP 172-322)
|
Not recorded
|
ZN ZINC ION × 16
ACT ACETATE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;298 K;0.1 M Imidazole, 0.2 M Zinc Acetate, 2% PEG 3350, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.35 Å
R-free 0.247
|
|
3KZ0
MCL-1 complex with MCL-1-specific selected peptide
Deposited 2009-12-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
172–327(156 aa)
Fragment:human MCL-1
|
Not recorded
|
ZN ZINC ION × 3
SO4 SULFATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.8;298 K;0.2 M zinc sulfate, 0.1 M imidazole, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.35 Å
R-free 0.270
|
|
3KZ0
MCL-1 complex with MCL-1-specific selected peptide
Deposited 2009-12-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
172–327(156 aa)
Fragment:human MCL-1
|
Not recorded
|
ZN ZINC ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.8;298 K;0.2 M zinc sulfate, 0.1 M imidazole, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.35 Å
R-free 0.270
|
|
3MK8
The MCL-1 BH3 Helix is an Exclusive MCL-1 Inhibitor and Apoptosis Sensitizer
Deposited 2010-04-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
172–327(156 aa)
Fragment:MCL-1, residues 172-327
Chain B
208–228(21 aa)
Fragment:MCL-1, residues 208-228
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;298 K;PEG MME 2000, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 2.32 Å
R-free 0.275
|
|
3PK1
Crystal structure of Mcl-1 in complex with the BaxBH3 domain
Deposited 2010-11-11
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
174–326(153 aa)
Fragment:Mcl-1 Bcl-2 like region, UNP residues 174-326
|
Not recorded
|
CD CADMIUM ION × 10
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;1M Sodium Acetate, 0.1M Hepes, 25mM Cadmium Sulfate, 5mM TCEP, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.49 Å
R-free 0.245
|
|
3PK1
Crystal structure of Mcl-1 in complex with the BaxBH3 domain
Deposited 2010-11-11
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain C
174–326(153 aa)
Fragment:Mcl-1 Bcl-2 like region, UNP residues 174-326
|
Not recorded
|
CD CADMIUM ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;1M Sodium Acetate, 0.1M Hepes, 25mM Cadmium Sulfate, 5mM TCEP, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.49 Å
R-free 0.245
|
|
3TWU
Crystal structure of ARC4 from human Tankyrase 2 in complex with peptide from human MCL1
Deposited 2011-09-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
73–88(16 aa)
Fragment:UNP residues 73-88
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;293 K;0.1 M HEPES-NaOH pH 6.5, 0.2 M NaOAc, 35% PEG 4000, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.80 Å
R-free 0.228
|
|
3WIX
Crystal structure of Mcl-1 in complex with compound 4
Deposited 2013-09-26
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
172–327(156 aa)
Fragment:UNP RESIDUES 172-327
|
Not recorded
|
LC3 7-(4-carboxyphenyl)-3-[3-(naphthalen-1-yloxy)propyl]pyrazolo[1,5-a]pyridine-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8;293 K;0.1M Tris pH 8.0, 0.2M sodium isothiocyanate, 20% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.90 Å
R-free 0.291
|
|
3WIX
Crystal structure of Mcl-1 in complex with compound 4
Deposited 2013-09-26
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
172–327(156 aa)
Fragment:UNP RESIDUES 172-327
|
Not recorded
|
LC3 7-(4-carboxyphenyl)-3-[3-(naphthalen-1-yloxy)propyl]pyrazolo[1,5-a]pyridine-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8;293 K;0.1M Tris pH 8.0, 0.2M sodium isothiocyanate, 20% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.90 Å
R-free 0.291
|
|
3WIX
Crystal structure of Mcl-1 in complex with compound 4
Deposited 2013-09-26
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
172–327(156 aa)
Fragment:UNP RESIDUES 172-327
|
Not recorded
|
LC3 7-(4-carboxyphenyl)-3-[3-(naphthalen-1-yloxy)propyl]pyrazolo[1,5-a]pyridine-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8;293 K;0.1M Tris pH 8.0, 0.2M sodium isothiocyanate, 20% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.90 Å
R-free 0.291
|
|
3WIX
Crystal structure of Mcl-1 in complex with compound 4
Deposited 2013-09-26
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
172–327(156 aa)
Fragment:UNP RESIDUES 172-327
|
Not recorded
|
LC3 7-(4-carboxyphenyl)-3-[3-(naphthalen-1-yloxy)propyl]pyrazolo[1,5-a]pyridine-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8;293 K;0.1M Tris pH 8.0, 0.2M sodium isothiocyanate, 20% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.90 Å
R-free 0.291
|
|
3WIY
Crystal structure of Mcl-1 in complex with compound 10
Deposited 2013-09-26
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
172–327(156 aa)
Fragment:UNP RESIDUES 172-327
|
Not recorded
|
LC6 7-(4-{[(4-{[(2R)-4-(dimethylamino)-1-(phenylsulfanyl)butan-2-yl]amino}-3-nitrophenyl)sulfonyl]carbamoyl}-2-methylphenyl)-3-[3-(naphthalen-1-yloxy)propyl]pyrazolo[1,5-a]pyridine-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;0.1M Bis-tris pH 6.5, 22% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.15 Å
R-free 0.283
|
|
3WIY
Crystal structure of Mcl-1 in complex with compound 10
Deposited 2013-09-26
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
172–327(156 aa)
Fragment:UNP RESIDUES 172-327
|
Not recorded
|
LC6 7-(4-{[(4-{[(2R)-4-(dimethylamino)-1-(phenylsulfanyl)butan-2-yl]amino}-3-nitrophenyl)sulfonyl]carbamoyl}-2-methylphenyl)-3-[3-(naphthalen-1-yloxy)propyl]pyrazolo[1,5-a]pyridine-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;0.1M Bis-tris pH 6.5, 22% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.15 Å
R-free 0.283
|
|
3WIY
Crystal structure of Mcl-1 in complex with compound 10
Deposited 2013-09-26
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
172–327(156 aa)
Fragment:UNP RESIDUES 172-327
|
Not recorded
|
LC6 7-(4-{[(4-{[(2R)-4-(dimethylamino)-1-(phenylsulfanyl)butan-2-yl]amino}-3-nitrophenyl)sulfonyl]carbamoyl}-2-methylphenyl)-3-[3-(naphthalen-1-yloxy)propyl]pyrazolo[1,5-a]pyridine-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;0.1M Bis-tris pH 6.5, 22% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.15 Å
R-free 0.283
|
|
3WIY
Crystal structure of Mcl-1 in complex with compound 10
Deposited 2013-09-26
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
172–327(156 aa)
Fragment:UNP RESIDUES 172-327
|
Not recorded
|
LC6 7-(4-{[(4-{[(2R)-4-(dimethylamino)-1-(phenylsulfanyl)butan-2-yl]amino}-3-nitrophenyl)sulfonyl]carbamoyl}-2-methylphenyl)-3-[3-(naphthalen-1-yloxy)propyl]pyrazolo[1,5-a]pyridine-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;0.1M Bis-tris pH 6.5, 22% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.15 Å
R-free 0.283
|
|
3WIY
Crystal structure of Mcl-1 in complex with compound 10
Deposited 2013-09-26
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 5
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain E
172–327(156 aa)
Fragment:UNP RESIDUES 172-327
|
Not recorded
|
LC6 7-(4-{[(4-{[(2R)-4-(dimethylamino)-1-(phenylsulfanyl)butan-2-yl]amino}-3-nitrophenyl)sulfonyl]carbamoyl}-2-methylphenyl)-3-[3-(naphthalen-1-yloxy)propyl]pyrazolo[1,5-a]pyridine-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;0.1M Bis-tris pH 6.5, 22% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.15 Å
R-free 0.283
|
|
3WIY
Crystal structure of Mcl-1 in complex with compound 10
Deposited 2013-09-26
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 6
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain F
172–327(156 aa)
Fragment:UNP RESIDUES 172-327
|
Not recorded
|
LC6 7-(4-{[(4-{[(2R)-4-(dimethylamino)-1-(phenylsulfanyl)butan-2-yl]amino}-3-nitrophenyl)sulfonyl]carbamoyl}-2-methylphenyl)-3-[3-(naphthalen-1-yloxy)propyl]pyrazolo[1,5-a]pyridine-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;0.1M Bis-tris pH 6.5, 22% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.15 Å
R-free 0.283
|
|
4BPI
Mcl-1 bound to alpha beta Puma BH3 peptide 2
Deposited 2013-05-27
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain A
209–327(119 aa)
Fragment:FUSION PROTEIN OF MOUSE MCL-1, RESIDUES 152-189 AND HUMAN MCL-1, RESIDUES 209-327
|
Not recorded
|
CD CADMIUM ION × 10
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5;0.1M HEPES, PH7.5 1M SODIUM ACETATE, 0.05M CADMIUM SULPHATE
|
Resolution 1.98 Å
R-free 0.243
|
|
4BPJ
Mcl-1 bound to alpha beta Puma BH3 peptide 3
Deposited 2013-05-27
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain A
209–327(119 aa)
Fragment:FUSION PROTEIN OF MOUSE MCL-1, RESIDUES 152-189 AND HUMAN MCL-1 RESIDUES, 209-327
|
Not recorded
|
ZN ZINC ION × 10
CL CHLORIDE ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7;0.2M IMADAZOLE, PH7.0 0.2M ZINC ACETATE
|
Resolution 1.60 Å
R-free 0.230
|
|
4HW2
Discovery of potent Mcl-1 inhibitors using fragment-based methods and structure-based design
Deposited 2012-11-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
172–323(152 aa)
|
Not recorded
|
19H 6-chloro-3-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1H-indole-2-carboxylic acid × 1
PGE TRIETHYLENE GLYCOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;30% PEG3350, 0.2M MgCl2, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.80 Å
R-free 0.245
|
|
4HW2
Discovery of potent Mcl-1 inhibitors using fragment-based methods and structure-based design
Deposited 2012-11-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
172–323(152 aa)
|
Not recorded
|
19H 6-chloro-3-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1H-indole-2-carboxylic acid × 1
PGE TRIETHYLENE GLYCOL × 2
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;30% PEG3350, 0.2M MgCl2, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.80 Å
R-free 0.245
|
|
4HW2
Discovery of potent Mcl-1 inhibitors using fragment-based methods and structure-based design
Deposited 2012-11-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
172–323(152 aa)
|
Not recorded
|
19H 6-chloro-3-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1H-indole-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;30% PEG3350, 0.2M MgCl2, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.80 Å
R-free 0.245
|
|
4HW2
Discovery of potent Mcl-1 inhibitors using fragment-based methods and structure-based design
Deposited 2012-11-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
172–323(152 aa)
|
Not recorded
|
19H 6-chloro-3-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1H-indole-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;30% PEG3350, 0.2M MgCl2, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.80 Å
R-free 0.245
|
|
4HW2
Discovery of potent Mcl-1 inhibitors using fragment-based methods and structure-based design
Deposited 2012-11-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 5
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain E
172–323(152 aa)
|
Not recorded
|
19H 6-chloro-3-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1H-indole-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;30% PEG3350, 0.2M MgCl2, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.80 Å
R-free 0.245
|
|
4HW2
Discovery of potent Mcl-1 inhibitors using fragment-based methods and structure-based design
Deposited 2012-11-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 6
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain F
172–323(152 aa)
|
Not recorded
|
19H 6-chloro-3-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1H-indole-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;30% PEG3350, 0.2M MgCl2, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.80 Å
R-free 0.245
|
|
4HW3
Discovery of potent Mcl-1 inhibitors using fragment-based methods and structure-based design
Deposited 2012-11-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
172–323(152 aa)
|
Not recorded
|
19G 3-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1-benzothiophene-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;30% PEG3350, 0.2M MgCl2, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.40 Å
R-free 0.263
|
|
4HW3
Discovery of potent Mcl-1 inhibitors using fragment-based methods and structure-based design
Deposited 2012-11-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 10
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain J
172–323(152 aa)
|
Not recorded
|
19G 3-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1-benzothiophene-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;30% PEG3350, 0.2M MgCl2, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.40 Å
R-free 0.263
|
|
4HW3
Discovery of potent Mcl-1 inhibitors using fragment-based methods and structure-based design
Deposited 2012-11-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 11
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain K
172–323(152 aa)
|
Not recorded
|
19G 3-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1-benzothiophene-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;30% PEG3350, 0.2M MgCl2, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.40 Å
R-free 0.263
|
|
4HW3
Discovery of potent Mcl-1 inhibitors using fragment-based methods and structure-based design
Deposited 2012-11-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 12
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain L
172–323(152 aa)
|
Not recorded
|
19G 3-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1-benzothiophene-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;30% PEG3350, 0.2M MgCl2, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.40 Å
R-free 0.263
|
|
4HW3
Discovery of potent Mcl-1 inhibitors using fragment-based methods and structure-based design
Deposited 2012-11-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
172–323(152 aa)
|
Not recorded
|
19G 3-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1-benzothiophene-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;30% PEG3350, 0.2M MgCl2, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.40 Å
R-free 0.263
|
|
4HW3
Discovery of potent Mcl-1 inhibitors using fragment-based methods and structure-based design
Deposited 2012-11-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
172–323(152 aa)
|
Not recorded
|
19G 3-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1-benzothiophene-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;30% PEG3350, 0.2M MgCl2, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.40 Å
R-free 0.263
|
|
4HW3
Discovery of potent Mcl-1 inhibitors using fragment-based methods and structure-based design
Deposited 2012-11-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
172–323(152 aa)
|
Not recorded
|
19G 3-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1-benzothiophene-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;30% PEG3350, 0.2M MgCl2, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.40 Å
R-free 0.263
|
|
4HW3
Discovery of potent Mcl-1 inhibitors using fragment-based methods and structure-based design
Deposited 2012-11-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 5
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain E
172–323(152 aa)
|
Not recorded
|
19G 3-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1-benzothiophene-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;30% PEG3350, 0.2M MgCl2, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.40 Å
R-free 0.263
|
|
4HW3
Discovery of potent Mcl-1 inhibitors using fragment-based methods and structure-based design
Deposited 2012-11-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 6
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain F
172–323(152 aa)
|
Not recorded
|
19G 3-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1-benzothiophene-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;30% PEG3350, 0.2M MgCl2, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.40 Å
R-free 0.263
|
|
4HW3
Discovery of potent Mcl-1 inhibitors using fragment-based methods and structure-based design
Deposited 2012-11-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 7
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain G
172–323(152 aa)
|
Not recorded
|
19G 3-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1-benzothiophene-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;30% PEG3350, 0.2M MgCl2, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.40 Å
R-free 0.263
|
|
4HW3
Discovery of potent Mcl-1 inhibitors using fragment-based methods and structure-based design
Deposited 2012-11-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 8
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain H
172–323(152 aa)
|
Not recorded
|
19G 3-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1-benzothiophene-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;30% PEG3350, 0.2M MgCl2, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.40 Å
R-free 0.263
|
|
4HW3
Discovery of potent Mcl-1 inhibitors using fragment-based methods and structure-based design
Deposited 2012-11-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 9
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain I
172–323(152 aa)
|
Not recorded
|
19G 3-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1-benzothiophene-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;30% PEG3350, 0.2M MgCl2, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.40 Å
R-free 0.263
|
|
4HW4
Discovery of potent Mcl-1 inhibitors using fragment-based methods and structure-based design
Deposited 2012-11-07
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
172–327(156 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;298 K;25% PEG3350, 0.2M NaCl, 0.1M Bis-Tris, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.53 Å
R-free 0.184
|
|
4HW4
Discovery of potent Mcl-1 inhibitors using fragment-based methods and structure-based design
Deposited 2012-11-07
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
172–327(156 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;298 K;25% PEG3350, 0.2M NaCl, 0.1M Bis-Tris, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.53 Å
R-free 0.184
|
|
4OQ5
Crystal Structure of Human MCL-1 Bound to Inhibitor 4-(4-methylnaphthalen-1-yl)-2-{[(4-phenoxyphenyl)sulfonyl]amino}benzoic acid
Deposited 2014-02-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
174–326(153 aa)
Fragment:UNP residues 174-326
|
Not recorded
|
2UU 4-(4-methylnaphthalen-1-yl)-2-{[(4-phenoxyphenyl)sulfonyl]amino}benzoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;277 K;0.2 M ammonium sulfate, 0.1 M MES, 30% w/v PEG5000 MME, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 2.86 Å
R-free 0.239
|
|
4OQ5
Crystal Structure of Human MCL-1 Bound to Inhibitor 4-(4-methylnaphthalen-1-yl)-2-{[(4-phenoxyphenyl)sulfonyl]amino}benzoic acid
Deposited 2014-02-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
174–326(153 aa)
Fragment:UNP residues 174-326
|
Not recorded
|
2UU 4-(4-methylnaphthalen-1-yl)-2-{[(4-phenoxyphenyl)sulfonyl]amino}benzoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;277 K;0.2 M ammonium sulfate, 0.1 M MES, 30% w/v PEG5000 MME, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 2.86 Å
R-free 0.239
|
|
4OQ5
Crystal Structure of Human MCL-1 Bound to Inhibitor 4-(4-methylnaphthalen-1-yl)-2-{[(4-phenoxyphenyl)sulfonyl]amino}benzoic acid
Deposited 2014-02-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
174–326(153 aa)
Fragment:UNP residues 174-326
|
Not recorded
|
2UU 4-(4-methylnaphthalen-1-yl)-2-{[(4-phenoxyphenyl)sulfonyl]amino}benzoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;277 K;0.2 M ammonium sulfate, 0.1 M MES, 30% w/v PEG5000 MME, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 2.86 Å
R-free 0.239
|
|
4OQ5
Crystal Structure of Human MCL-1 Bound to Inhibitor 4-(4-methylnaphthalen-1-yl)-2-{[(4-phenoxyphenyl)sulfonyl]amino}benzoic acid
Deposited 2014-02-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
174–326(153 aa)
Fragment:UNP residues 174-326
|
Not recorded
|
2UU 4-(4-methylnaphthalen-1-yl)-2-{[(4-phenoxyphenyl)sulfonyl]amino}benzoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;277 K;0.2 M ammonium sulfate, 0.1 M MES, 30% w/v PEG5000 MME, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 2.86 Å
R-free 0.239
|
|
4OQ5
Crystal Structure of Human MCL-1 Bound to Inhibitor 4-(4-methylnaphthalen-1-yl)-2-{[(4-phenoxyphenyl)sulfonyl]amino}benzoic acid
Deposited 2014-02-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 5
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain E
174–326(153 aa)
Fragment:UNP residues 174-326
|
Not recorded
|
2UU 4-(4-methylnaphthalen-1-yl)-2-{[(4-phenoxyphenyl)sulfonyl]amino}benzoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;277 K;0.2 M ammonium sulfate, 0.1 M MES, 30% w/v PEG5000 MME, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 2.86 Å
R-free 0.239
|
|
4OQ5
Crystal Structure of Human MCL-1 Bound to Inhibitor 4-(4-methylnaphthalen-1-yl)-2-{[(4-phenoxyphenyl)sulfonyl]amino}benzoic acid
Deposited 2014-02-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 6
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain F
174–326(153 aa)
Fragment:UNP residues 174-326
|
Not recorded
|
2UU 4-(4-methylnaphthalen-1-yl)-2-{[(4-phenoxyphenyl)sulfonyl]amino}benzoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;277 K;0.2 M ammonium sulfate, 0.1 M MES, 30% w/v PEG5000 MME, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 2.86 Å
R-free 0.239
|
|
4OQ6
Crystal Structure of Human MCL-1 Bound to Inhibitor 4-hydroxy-4'-propylbiphenyl-3-carboxylic acid
Deposited 2014-02-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
174–326(153 aa)
|
Not recorded
|
2UV 4-hydroxy-4'-propylbiphenyl-3-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;VAPOR DIFFUSION, SITTING DROP
|
Resolution 1.81 Å
R-free 0.230
|
|
4OQ6
Crystal Structure of Human MCL-1 Bound to Inhibitor 4-hydroxy-4'-propylbiphenyl-3-carboxylic acid
Deposited 2014-02-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
174–326(153 aa)
|
Not recorded
|
2UV 4-hydroxy-4'-propylbiphenyl-3-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;VAPOR DIFFUSION, SITTING DROP
|
Resolution 1.81 Å
R-free 0.230
|
|
4WGI
A Single Diastereomer of a Macrolactam Core Binds Specifically to Myeloid Cell Leukemia 1 (MCL1)
Deposited 2014-09-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–321(149 aa)
Fragment:unp residues 27-392,unp residues 173-291
|
Mutation:K194A, K197A, R201A
|
3M6 (2S)-2-[(2S,3R)-10-{[(4-fluorophenyl)sulfonyl]amino}-3-methyl-2-[(methyl{[4-(trifluoromethyl)phenyl]carbamoyl}amino)methyl]-6-oxo-3,4-dihydro-2H-1,5-benzoxazocin-5(6H)-yl]propanoic acid × 1
MG MAGNESIUM ION × 1
FMT FORMIC ACID × 10
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;298 K;10 MG/ML MBP-MCL1 VCID 9272, 200MM MG FORMATE, 20% PEG3350, 0.5M BRD-0611, 1MM MALTOSE, CRYOPROTECTANT 20% ETHYLENE GLYCOL
|
Resolution 1.85 Å
R-free 0.213
|
|
4WMR
STRUCTURE OF MCL1 BOUND TO BRD inhibitor ligand 1 AT 1.7A
Deposited 2014-10-09
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–321(149 aa)
|
Not recorded
|
ZN ZINC ION × 3
865 7-[2-(1H-imidazol-1-yl)-4-methylpyridin-3-yl]-3-[3-(naphthalen-1-yloxy)propyl]-1-[2-oxo-2-(piperazin-1-yl)ethyl]-1H-indole-2-carboxylic acid × 1
POP PYROPHOSPHATE 2- × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;298 K;10 mg/ml MCL1, 16% PEG8000, 20% GLYCEROL, 40MM KH2PO4, 2MM ligand 1, 2MM ZINC CHLORIDE, 9.98 MG/ML MCL1
|
Resolution 1.70 Å
R-free 0.206
|
|
4WMR
STRUCTURE OF MCL1 BOUND TO BRD inhibitor ligand 1 AT 1.7A
Deposited 2014-10-09
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
173–321(149 aa)
|
Not recorded
|
ZN ZINC ION × 6
865 7-[2-(1H-imidazol-1-yl)-4-methylpyridin-3-yl]-3-[3-(naphthalen-1-yloxy)propyl]-1-[2-oxo-2-(piperazin-1-yl)ethyl]-1H-indole-2-carboxylic acid × 2
POP PYROPHOSPHATE 2- × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;298 K;10 mg/ml MCL1, 16% PEG8000, 20% GLYCEROL, 40MM KH2PO4, 2MM ligand 1, 2MM ZINC CHLORIDE, 9.98 MG/ML MCL1
|
Resolution 1.70 Å
R-free 0.206
|
|
4WMR
STRUCTURE OF MCL1 BOUND TO BRD inhibitor ligand 1 AT 1.7A
Deposited 2014-10-09
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
173–321(149 aa)
|
Not recorded
|
ZN ZINC ION × 6
865 7-[2-(1H-imidazol-1-yl)-4-methylpyridin-3-yl]-3-[3-(naphthalen-1-yloxy)propyl]-1-[2-oxo-2-(piperazin-1-yl)ethyl]-1H-indole-2-carboxylic acid × 2
POP PYROPHOSPHATE 2- × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;298 K;10 mg/ml MCL1, 16% PEG8000, 20% GLYCEROL, 40MM KH2PO4, 2MM ligand 1, 2MM ZINC CHLORIDE, 9.98 MG/ML MCL1
|
Resolution 1.70 Å
R-free 0.206
|
|
4WMS
STRUCTURE OF APO MBP-MCL1 AT 1.9A
Deposited 2014-10-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
174–321(148 aa)
Fragment:UNP P0AEX9 residues 27-392,UNP Q07820 residues 174-321
|
Mutation:K194A, K197A, R201A
|
MG MAGNESIUM ION × 1
EDO 1,2-ETHANEDIOL × 2
FMT FORMIC ACID × 10
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;298 K;10 MG/ML MBP-MCL1 VCID 9272, 200MM MG FORMATE, 20% PEG3350, 1MM MALTOSE, CRYOPROTECTANT 20%
|
Resolution 1.90 Å
R-free 0.214
|
|
4WMT
STRUCTURE OF MBP-MCL1 BOUND TO ligand 1 AT 2.35A
Deposited 2014-10-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
174–321(148 aa)
Fragment:UNP P0AEX9 residues 27-392,UNP Q07820 residues 174-321
|
Mutation:K194A, K197A, R201A
|
865 7-[2-(1H-imidazol-1-yl)-4-methylpyridin-3-yl]-3-[3-(naphthalen-1-yloxy)propyl]-1-[2-oxo-2-(piperazin-1-yl)ethyl]-1H-indole-2-carboxylic acid × 1
EDO 1,2-ETHANEDIOL × 1
FMT FORMIC ACID × 11
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;298 K;10 MG/ML MBP-MCL1, 200MM MG FORMATE, 20% PEG3350, 1MM MALTOSE, 2MM ligand
|
Resolution 2.35 Å
R-free 0.215
|
|
4WMU
STRUCTURE OF MBP-MCL1 BOUND TO ligand 2 AT 1.55A
Deposited 2014-10-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
174–321(148 aa)
Fragment:UNP P0AEX9 residues 27-392,UNP Q07820 residues 174-321
|
Mutation:K194A, K197A, R201A
|
19H 6-chloro-3-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1H-indole-2-carboxylic acid × 1
MG MAGNESIUM ION × 2
FMT FORMIC ACID × 13
NA SODIUM ION × 1
EDO 1,2-ETHANEDIOL × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;298 K;10 MG/ML MBP-MCL1, 200MM MG FORMATE, 20% PEG3350, 1MM MALTOSE, 1MM ligand 2
|
Resolution 1.55 Å
R-free 0.190
|
|
4WMV
STRUCTURE OF MBP-MCL1 BOUND TO ligand 4 AT 2.4A
Deposited 2014-10-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
174–321(148 aa)
|
Mutation:K194A, K197A, R201A
|
CL CHLORIDE ION × 1
MG MAGNESIUM ION × 1
3R4 3-chloro-6-fluoro-1-benzothiophene-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;298 K;10 MG/ML MBP-MCL1, 200MM MG FORMATE, 20% PEG3350, 1MM MALTOSE, CRYOPROTECTANT 20% ethylene glycol, SOAKED IN 10MM ligand for 2 DAYS
|
Resolution 2.40 Å
R-free 0.253
|
|
4WMW
The structure of MBP-MCL1 bound to ligand 5 at 1.9A
Deposited 2014-10-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
174–321(148 aa)
|
Mutation:K194A, K197A, R201A
|
MG MAGNESIUM ION × 1
EDO 1,2-ETHANEDIOL × 2
FMT FORMIC ACID × 7
3R6 2-hydroxy-5-(methylsulfanyl)benzoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;298 K;10 MG/ML MBP-MCL1 VCID 9272, 200MM MG FORMATE, 20% PEG3350, 1MM MALTOSE, 2MM ligand 5, CRYOPROTECTANT 20% ETHYLENE GLYCOL, PH 7.0
|
Resolution 1.90 Å
R-free 0.214
|
|
4WMX
The structure of MBP-MCL1 bound to ligand 6 at 2.0A
Deposited 2014-10-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
174–321(148 aa)
Fragment:UNP P0AEX9 residues 27-392,UNP Q07820 residues 174-321
|
Mutation:K194A, K197A, R201A
|
3R7 4-ethenyl-2-[(phenylsulfonyl)amino]benzoic acid × 1
FMT FORMIC ACID × 10
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;298 K;10 MG/ML MBP-MCL1, 200MM MG FORMATE, 20% PEG3350, 1MM MALTOSE, 2MM ligand 6, CRYOPROTECTANT 20% ETHYLENE GLYCOL, PH 7.0
|
Resolution 2.00 Å
R-free 0.217
|
|
4ZBF
Mcl-1 complexed with small molecules
Deposited 2015-04-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
172–327(156 aa)
Fragment:unp residues 172-327
|
Not recorded
|
4M7 (1R)-7-[3-(naphthalen-1-yloxy)propyl]-3,4-dihydro-2H-[1,4]thiazepino[2,3,4-hi]indole-6-carboxylic acid 1-oxide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;291 K;PEG 3350, magnesium chloride, Bis-Tris
|
Resolution 2.20 Å
R-free 0.232
|
|
4ZBF
Mcl-1 complexed with small molecules
Deposited 2015-04-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 10
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain I
172–327(156 aa)
Fragment:unp residues 172-327
|
Not recorded
|
4M7 (1R)-7-[3-(naphthalen-1-yloxy)propyl]-3,4-dihydro-2H-[1,4]thiazepino[2,3,4-hi]indole-6-carboxylic acid 1-oxide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;291 K;PEG 3350, magnesium chloride, Bis-Tris
|
Resolution 2.20 Å
R-free 0.232
|
|
4ZBF
Mcl-1 complexed with small molecules
Deposited 2015-04-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 11
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain J
172–327(156 aa)
Fragment:unp residues 172-327
|
Not recorded
|
4M7 (1R)-7-[3-(naphthalen-1-yloxy)propyl]-3,4-dihydro-2H-[1,4]thiazepino[2,3,4-hi]indole-6-carboxylic acid 1-oxide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;291 K;PEG 3350, magnesium chloride, Bis-Tris
|
Resolution 2.20 Å
R-free 0.232
|
|
4ZBF
Mcl-1 complexed with small molecules
Deposited 2015-04-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 12
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain K
172–327(156 aa)
Fragment:unp residues 172-327
|
Not recorded
|
4M7 (1R)-7-[3-(naphthalen-1-yloxy)propyl]-3,4-dihydro-2H-[1,4]thiazepino[2,3,4-hi]indole-6-carboxylic acid 1-oxide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;291 K;PEG 3350, magnesium chloride, Bis-Tris
|
Resolution 2.20 Å
R-free 0.232
|
|
4ZBF
Mcl-1 complexed with small molecules
Deposited 2015-04-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 13
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain L
172–327(156 aa)
Fragment:unp residues 172-327
|
Not recorded
|
4M7 (1R)-7-[3-(naphthalen-1-yloxy)propyl]-3,4-dihydro-2H-[1,4]thiazepino[2,3,4-hi]indole-6-carboxylic acid 1-oxide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;291 K;PEG 3350, magnesium chloride, Bis-Tris
|
Resolution 2.20 Å
R-free 0.232
|
|
4ZBF
Mcl-1 complexed with small molecules
Deposited 2015-04-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
172–327(156 aa)
Fragment:unp residues 172-327
|
Not recorded
|
4M7 (1R)-7-[3-(naphthalen-1-yloxy)propyl]-3,4-dihydro-2H-[1,4]thiazepino[2,3,4-hi]indole-6-carboxylic acid 1-oxide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;291 K;PEG 3350, magnesium chloride, Bis-Tris
|
Resolution 2.20 Å
R-free 0.232
|
|
4ZBF
Mcl-1 complexed with small molecules
Deposited 2015-04-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
172–327(156 aa)
Fragment:unp residues 172-327
|
Not recorded
|
4M7 (1R)-7-[3-(naphthalen-1-yloxy)propyl]-3,4-dihydro-2H-[1,4]thiazepino[2,3,4-hi]indole-6-carboxylic acid 1-oxide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;291 K;PEG 3350, magnesium chloride, Bis-Tris
|
Resolution 2.20 Å
R-free 0.232
|
|
4ZBF
Mcl-1 complexed with small molecules
Deposited 2015-04-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
172–327(156 aa)
Fragment:unp residues 172-327
|
Not recorded
|
4M7 (1R)-7-[3-(naphthalen-1-yloxy)propyl]-3,4-dihydro-2H-[1,4]thiazepino[2,3,4-hi]indole-6-carboxylic acid 1-oxide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;291 K;PEG 3350, magnesium chloride, Bis-Tris
|
Resolution 2.20 Å
R-free 0.232
|
|
4ZBF
Mcl-1 complexed with small molecules
Deposited 2015-04-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 5
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain E
172–327(156 aa)
Fragment:unp residues 172-327
|
Not recorded
|
4M7 (1R)-7-[3-(naphthalen-1-yloxy)propyl]-3,4-dihydro-2H-[1,4]thiazepino[2,3,4-hi]indole-6-carboxylic acid 1-oxide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;291 K;PEG 3350, magnesium chloride, Bis-Tris
|
Resolution 2.20 Å
R-free 0.232
|
|
4ZBF
Mcl-1 complexed with small molecules
Deposited 2015-04-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 6
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain E
172–327(156 aa)
Fragment:unp residues 172-327
|
Not recorded
|
4M7 (1R)-7-[3-(naphthalen-1-yloxy)propyl]-3,4-dihydro-2H-[1,4]thiazepino[2,3,4-hi]indole-6-carboxylic acid 1-oxide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;291 K;PEG 3350, magnesium chloride, Bis-Tris
|
Resolution 2.20 Å
R-free 0.232
|
|
4ZBF
Mcl-1 complexed with small molecules
Deposited 2015-04-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 7
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain F
172–327(156 aa)
Fragment:unp residues 172-327
|
Not recorded
|
4M7 (1R)-7-[3-(naphthalen-1-yloxy)propyl]-3,4-dihydro-2H-[1,4]thiazepino[2,3,4-hi]indole-6-carboxylic acid 1-oxide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;291 K;PEG 3350, magnesium chloride, Bis-Tris
|
Resolution 2.20 Å
R-free 0.232
|
|
4ZBF
Mcl-1 complexed with small molecules
Deposited 2015-04-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 8
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain G
172–327(156 aa)
Fragment:unp residues 172-327
|
Not recorded
|
4M7 (1R)-7-[3-(naphthalen-1-yloxy)propyl]-3,4-dihydro-2H-[1,4]thiazepino[2,3,4-hi]indole-6-carboxylic acid 1-oxide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;291 K;PEG 3350, magnesium chloride, Bis-Tris
|
Resolution 2.20 Å
R-free 0.232
|
|
4ZBF
Mcl-1 complexed with small molecules
Deposited 2015-04-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 9
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain H
172–327(156 aa)
Fragment:unp residues 172-327
|
Not recorded
|
4M7 (1R)-7-[3-(naphthalen-1-yloxy)propyl]-3,4-dihydro-2H-[1,4]thiazepino[2,3,4-hi]indole-6-carboxylic acid 1-oxide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;291 K;PEG 3350, magnesium chloride, Bis-Tris
|
Resolution 2.20 Å
R-free 0.232
|
|
4ZBI
Mcl-1 complexed with small molecules
Deposited 2015-04-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
172–327(156 aa)
|
Not recorded
|
4M6 1-[3-(naphthalen-1-yloxy)propyl]-5,6-dihydro-4H-pyrrolo[3,2,1-ij]quinoline-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;PEG3350, magnesium chloride, Bis-Tris
|
Resolution 2.50 Å
R-free 0.239
|
|
4ZBI
Mcl-1 complexed with small molecules
Deposited 2015-04-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 10
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain J
172–327(156 aa)
|
Not recorded
|
4M6 1-[3-(naphthalen-1-yloxy)propyl]-5,6-dihydro-4H-pyrrolo[3,2,1-ij]quinoline-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;PEG3350, magnesium chloride, Bis-Tris
|
Resolution 2.50 Å
R-free 0.239
|
|
4ZBI
Mcl-1 complexed with small molecules
Deposited 2015-04-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 11
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain K
172–327(156 aa)
|
Not recorded
|
4M6 1-[3-(naphthalen-1-yloxy)propyl]-5,6-dihydro-4H-pyrrolo[3,2,1-ij]quinoline-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;PEG3350, magnesium chloride, Bis-Tris
|
Resolution 2.50 Å
R-free 0.239
|
|
4ZBI
Mcl-1 complexed with small molecules
Deposited 2015-04-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 12
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain L
172–327(156 aa)
|
Not recorded
|
4M6 1-[3-(naphthalen-1-yloxy)propyl]-5,6-dihydro-4H-pyrrolo[3,2,1-ij]quinoline-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;PEG3350, magnesium chloride, Bis-Tris
|
Resolution 2.50 Å
R-free 0.239
|
|
4ZBI
Mcl-1 complexed with small molecules
Deposited 2015-04-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
172–327(156 aa)
|
Not recorded
|
4M6 1-[3-(naphthalen-1-yloxy)propyl]-5,6-dihydro-4H-pyrrolo[3,2,1-ij]quinoline-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;PEG3350, magnesium chloride, Bis-Tris
|
Resolution 2.50 Å
R-free 0.239
|
|
4ZBI
Mcl-1 complexed with small molecules
Deposited 2015-04-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
172–327(156 aa)
|
Not recorded
|
4M6 1-[3-(naphthalen-1-yloxy)propyl]-5,6-dihydro-4H-pyrrolo[3,2,1-ij]quinoline-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;PEG3350, magnesium chloride, Bis-Tris
|
Resolution 2.50 Å
R-free 0.239
|
|
4ZBI
Mcl-1 complexed with small molecules
Deposited 2015-04-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
172–327(156 aa)
|
Not recorded
|
4M6 1-[3-(naphthalen-1-yloxy)propyl]-5,6-dihydro-4H-pyrrolo[3,2,1-ij]quinoline-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;PEG3350, magnesium chloride, Bis-Tris
|
Resolution 2.50 Å
R-free 0.239
|
|
4ZBI
Mcl-1 complexed with small molecules
Deposited 2015-04-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 5
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain E
172–327(156 aa)
|
Not recorded
|
4M6 1-[3-(naphthalen-1-yloxy)propyl]-5,6-dihydro-4H-pyrrolo[3,2,1-ij]quinoline-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;PEG3350, magnesium chloride, Bis-Tris
|
Resolution 2.50 Å
R-free 0.239
|
|
4ZBI
Mcl-1 complexed with small molecules
Deposited 2015-04-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 6
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain F
172–327(156 aa)
|
Not recorded
|
4M6 1-[3-(naphthalen-1-yloxy)propyl]-5,6-dihydro-4H-pyrrolo[3,2,1-ij]quinoline-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;PEG3350, magnesium chloride, Bis-Tris
|
Resolution 2.50 Å
R-free 0.239
|
|
4ZBI
Mcl-1 complexed with small molecules
Deposited 2015-04-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 7
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain G
172–327(156 aa)
|
Not recorded
|
4M6 1-[3-(naphthalen-1-yloxy)propyl]-5,6-dihydro-4H-pyrrolo[3,2,1-ij]quinoline-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;PEG3350, magnesium chloride, Bis-Tris
|
Resolution 2.50 Å
R-free 0.239
|
|
4ZBI
Mcl-1 complexed with small molecules
Deposited 2015-04-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 8
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain H
172–327(156 aa)
|
Not recorded
|
4M6 1-[3-(naphthalen-1-yloxy)propyl]-5,6-dihydro-4H-pyrrolo[3,2,1-ij]quinoline-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;PEG3350, magnesium chloride, Bis-Tris
|
Resolution 2.50 Å
R-free 0.239
|
|
4ZBI
Mcl-1 complexed with small molecules
Deposited 2015-04-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 9
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain I
172–327(156 aa)
|
Not recorded
|
4M6 1-[3-(naphthalen-1-yloxy)propyl]-5,6-dihydro-4H-pyrrolo[3,2,1-ij]quinoline-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;PEG3350, magnesium chloride, Bis-Tris
|
Resolution 2.50 Å
R-free 0.239
|
|
5C3F
Crystal structure of Mcl-1 bound to BID-MM
Deposited 2015-06-17
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
173–327(155 aa)
|
Not recorded
|
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8;277 K;18% PEG 20000, 0.1 M TRIS pH 8.0
|
Resolution 1.43 Å
R-free 0.176
|
|
5C6H
Mcl-1 complexed with Mule
Deposited 2015-06-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 24
PDB declaration: 24-meric
|
Chain A
171–327(157 aa)
Fragment:UNP residues 171-327
Chain C
171–327(157 aa)
Fragment:UNP residues 171-327
Chain E
171–327(157 aa)
Fragment:UNP residues 171-327
Chain G
171–327(157 aa)
Fragment:UNP residues 171-327
Chain I
171–327(157 aa)
Fragment:UNP residues 171-327
Chain K
171–327(157 aa)
Fragment:UNP residues 171-327
Chain M
171–327(157 aa)
Fragment:UNP residues 171-327
Chain O
171–327(157 aa)
Fragment:UNP residues 171-327
Chain Q
171–327(157 aa)
Fragment:UNP residues 171-327
Chain S
171–327(157 aa)
Fragment:UNP residues 171-327
Chain U
171–327(157 aa)
Fragment:UNP residues 171-327
Chain W
171–327(157 aa)
Fragment:UNP residues 171-327
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;PEG3350, calcium chloride
|
Resolution 2.05 Å
R-free 0.346
|
|
5C6H
Mcl-1 complexed with Mule
Deposited 2015-06-23
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 10
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain Q
171–327(157 aa)
Fragment:UNP residues 171-327
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;PEG3350, calcium chloride
|
Resolution 2.05 Å
R-free 0.346
|
|
5C6H
Mcl-1 complexed with Mule
Deposited 2015-06-23
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 11
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain S
171–327(157 aa)
Fragment:UNP residues 171-327
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;PEG3350, calcium chloride
|
Resolution 2.05 Å
R-free 0.346
|
|
5C6H
Mcl-1 complexed with Mule
Deposited 2015-06-23
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 12
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain U
171–327(157 aa)
Fragment:UNP residues 171-327
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;PEG3350, calcium chloride
|
Resolution 2.05 Å
R-free 0.346
|
|
5C6H
Mcl-1 complexed with Mule
Deposited 2015-06-23
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 13
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain W
171–327(157 aa)
Fragment:UNP residues 171-327
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;PEG3350, calcium chloride
|
Resolution 2.05 Å
R-free 0.346
|
|
5C6H
Mcl-1 complexed with Mule
Deposited 2015-06-23
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
171–327(157 aa)
Fragment:UNP residues 171-327
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;PEG3350, calcium chloride
|
Resolution 2.05 Å
R-free 0.346
|
|
5C6H
Mcl-1 complexed with Mule
Deposited 2015-06-23
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain C
171–327(157 aa)
Fragment:UNP residues 171-327
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;PEG3350, calcium chloride
|
Resolution 2.05 Å
R-free 0.346
|
|
5C6H
Mcl-1 complexed with Mule
Deposited 2015-06-23
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain E
171–327(157 aa)
Fragment:UNP residues 171-327
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;PEG3350, calcium chloride
|
Resolution 2.05 Å
R-free 0.346
|
|
5C6H
Mcl-1 complexed with Mule
Deposited 2015-06-23
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 5
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain G
171–327(157 aa)
Fragment:UNP residues 171-327
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;PEG3350, calcium chloride
|
Resolution 2.05 Å
R-free 0.346
|
|
5C6H
Mcl-1 complexed with Mule
Deposited 2015-06-23
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 6
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain I
171–327(157 aa)
Fragment:UNP residues 171-327
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;PEG3350, calcium chloride
|
Resolution 2.05 Å
R-free 0.346
|
|
5C6H
Mcl-1 complexed with Mule
Deposited 2015-06-23
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 7
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain K
171–327(157 aa)
Fragment:UNP residues 171-327
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;PEG3350, calcium chloride
|
Resolution 2.05 Å
R-free 0.346
|
|
5C6H
Mcl-1 complexed with Mule
Deposited 2015-06-23
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 8
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain M
171–327(157 aa)
Fragment:UNP residues 171-327
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;PEG3350, calcium chloride
|
Resolution 2.05 Å
R-free 0.346
|
|
5C6H
Mcl-1 complexed with Mule
Deposited 2015-06-23
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 9
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain O
171–327(157 aa)
Fragment:UNP residues 171-327
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;PEG3350, calcium chloride
|
Resolution 2.05 Å
R-free 0.346
|
|
5FC4
Mcl-1 complexed with small molecule inhibitor
Deposited 2015-12-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
172–320(149 aa)
Fragment:unp residues 172-320
|
Not recorded
|
5WL 6-chloranyl-~{N}-methylsulfonyl-3-(3-naphthalen-1-yloxypropyl)-1~{H}-indole-2-carboxamide × 2
5WK 2-[5-[1,1,2,2-tetrakis(fluoranyl)ethyl]-1~{H}-pyrazol-3-yl]phenol × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;292 K;PEG 3350, magnesium chloride, Bis-Tris
|
Resolution 1.50 Å
R-free 0.196
|
|
5FDO
Mcl-1 complexed with small molecule inhibitor
Deposited 2015-12-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
172–320(149 aa)
Fragment:unp residues 172-320
|
Not recorded
|
5X2 3-[3-(4-chloranyl-3,5-dimethyl-phenoxy)propyl]-~{N}-(phenylsulfonyl)-1~{H}-indole-2-carboxamide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;292 K;PEG 3350, BIS-TRIS, magnesium chloride
|
Resolution 2.80 Å
R-free 0.291
|
|
5FDO
Mcl-1 complexed with small molecule inhibitor
Deposited 2015-12-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
172–320(149 aa)
Fragment:unp residues 172-320
|
Not recorded
|
5X2 3-[3-(4-chloranyl-3,5-dimethyl-phenoxy)propyl]-~{N}-(phenylsulfonyl)-1~{H}-indole-2-carboxamide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;292 K;PEG 3350, BIS-TRIS, magnesium chloride
|
Resolution 2.80 Å
R-free 0.291
|
|
5FDO
Mcl-1 complexed with small molecule inhibitor
Deposited 2015-12-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
172–320(149 aa)
Fragment:unp residues 172-320
|
Not recorded
|
5X2 3-[3-(4-chloranyl-3,5-dimethyl-phenoxy)propyl]-~{N}-(phenylsulfonyl)-1~{H}-indole-2-carboxamide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;292 K;PEG 3350, BIS-TRIS, magnesium chloride
|
Resolution 2.80 Å
R-free 0.291
|
|
5FDO
Mcl-1 complexed with small molecule inhibitor
Deposited 2015-12-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
172–320(149 aa)
Fragment:unp residues 172-320
|
Not recorded
|
5X2 3-[3-(4-chloranyl-3,5-dimethyl-phenoxy)propyl]-~{N}-(phenylsulfonyl)-1~{H}-indole-2-carboxamide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;292 K;PEG 3350, BIS-TRIS, magnesium chloride
|
Resolution 2.80 Å
R-free 0.291
|
|
5FDR
Mcl-1 complexed with small molecule inhibitor
Deposited 2015-12-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
172–327(156 aa)
|
Not recorded
|
5X3 5-[[6-chloranyl-3-[3-(4-chloranyl-3,5-dimethyl-phenoxy)propyl]-7-(3,5-dimethyl-1~{H}-pyrazol-4-yl)-1~{H}-indol-2-yl]carbonylsulfamoyl]furan-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;292 K;PEG 3350, Bis-Tris, magnesium chloride
|
Resolution 2.60 Å
R-free 0.283
|
|
5FDR
Mcl-1 complexed with small molecule inhibitor
Deposited 2015-12-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
172–327(156 aa)
|
Not recorded
|
5X3 5-[[6-chloranyl-3-[3-(4-chloranyl-3,5-dimethyl-phenoxy)propyl]-7-(3,5-dimethyl-1~{H}-pyrazol-4-yl)-1~{H}-indol-2-yl]carbonylsulfamoyl]furan-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;292 K;PEG 3350, Bis-Tris, magnesium chloride
|
Resolution 2.60 Å
R-free 0.283
|
|
5FDR
Mcl-1 complexed with small molecule inhibitor
Deposited 2015-12-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
172–327(156 aa)
|
Not recorded
|
5X3 5-[[6-chloranyl-3-[3-(4-chloranyl-3,5-dimethyl-phenoxy)propyl]-7-(3,5-dimethyl-1~{H}-pyrazol-4-yl)-1~{H}-indol-2-yl]carbonylsulfamoyl]furan-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;292 K;PEG 3350, Bis-Tris, magnesium chloride
|
Resolution 2.60 Å
R-free 0.283
|
|
5FDR
Mcl-1 complexed with small molecule inhibitor
Deposited 2015-12-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
172–327(156 aa)
|
Not recorded
|
5X3 5-[[6-chloranyl-3-[3-(4-chloranyl-3,5-dimethyl-phenoxy)propyl]-7-(3,5-dimethyl-1~{H}-pyrazol-4-yl)-1~{H}-indol-2-yl]carbonylsulfamoyl]furan-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;292 K;PEG 3350, Bis-Tris, magnesium chloride
|
Resolution 2.60 Å
R-free 0.283
|
|
5IEZ
Discovery of Potent Myeloid Cell Leukemia-1 (Mcl-1) inhibitors using Structure-Based Design
Deposited 2016-02-25
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
172–327(156 aa)
Fragment:unp residues 172-327
|
Not recorded
|
6AL 3-({6-chloro-3-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-7-(1,3,5-trimethyl-1H-pyrazol-4-yl)-1H-indole-2-carbonyl}amino)benzoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.6;292 K;PEG 3350, magnesium chloride, Bis-Tris
|
Resolution 2.60 Å
R-free 0.277
|
|
5IEZ
Discovery of Potent Myeloid Cell Leukemia-1 (Mcl-1) inhibitors using Structure-Based Design
Deposited 2016-02-25
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
172–327(156 aa)
Fragment:unp residues 172-327
|
Not recorded
|
6AL 3-({6-chloro-3-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-7-(1,3,5-trimethyl-1H-pyrazol-4-yl)-1H-indole-2-carbonyl}amino)benzoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.6;292 K;PEG 3350, magnesium chloride, Bis-Tris
|
Resolution 2.60 Å
R-free 0.277
|
|
5IEZ
Discovery of Potent Myeloid Cell Leukemia-1 (Mcl-1) inhibitors using Structure-Based Design
Deposited 2016-02-25
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
172–327(156 aa)
Fragment:unp residues 172-327
|
Not recorded
|
6AL 3-({6-chloro-3-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-7-(1,3,5-trimethyl-1H-pyrazol-4-yl)-1H-indole-2-carbonyl}amino)benzoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.6;292 K;PEG 3350, magnesium chloride, Bis-Tris
|
Resolution 2.60 Å
R-free 0.277
|
|
5IEZ
Discovery of Potent Myeloid Cell Leukemia-1 (Mcl-1) inhibitors using Structure-Based Design
Deposited 2016-02-25
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
172–327(156 aa)
Fragment:unp residues 172-327
|
Not recorded
|
6AL 3-({6-chloro-3-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-7-(1,3,5-trimethyl-1H-pyrazol-4-yl)-1H-indole-2-carbonyl}amino)benzoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.6;292 K;PEG 3350, magnesium chloride, Bis-Tris
|
Resolution 2.60 Å
R-free 0.277
|
|
5IF4
Discovery of Potent Myeloid Cell Leukemia-1 (Mcl-1) inhibitors using Structure-Based Design
Deposited 2016-02-25
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
172–327(156 aa)
Fragment:unp residues 172-327
|
Not recorded
|
6AK 4-{8-chloro-11-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1-oxo-7-(1,3,5-trimethyl-1H-pyrazol-4-yl)-4,5-dihydro-1H-[1,4]diazepino[1,2-a]indol-2(3H)-yl}-1-methyl-1H-indole-6-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;292 K;PEG 3350, Bis-Tris, Magnesium chloride
|
Resolution 2.39 Å
R-free 0.218
|
|
5IF4
Discovery of Potent Myeloid Cell Leukemia-1 (Mcl-1) inhibitors using Structure-Based Design
Deposited 2016-02-25
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
172–327(156 aa)
Fragment:unp residues 172-327
|
Not recorded
|
6AK 4-{8-chloro-11-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1-oxo-7-(1,3,5-trimethyl-1H-pyrazol-4-yl)-4,5-dihydro-1H-[1,4]diazepino[1,2-a]indol-2(3H)-yl}-1-methyl-1H-indole-6-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;292 K;PEG 3350, Bis-Tris, Magnesium chloride
|
Resolution 2.39 Å
R-free 0.218
|
|
5JSB
Crystal structure of Mcl1-inhibitor complex
Deposited 2016-05-07
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
172–350(179 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 9.5;298 K;1.27 M sodium citrate, CAPS pH 10.5 or
CHES pH 9.5
|
Resolution 2.74 Å
R-free 0.230
|
|
5JSB
Crystal structure of Mcl1-inhibitor complex
Deposited 2016-05-07
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain C
172–350(179 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 9.5;298 K;1.27 M sodium citrate, CAPS pH 10.5 or
CHES pH 9.5
|
Resolution 2.74 Å
R-free 0.230
|
|
5JSB
Crystal structure of Mcl1-inhibitor complex
Deposited 2016-05-07
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain E
172–350(179 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 9.5;298 K;1.27 M sodium citrate, CAPS pH 10.5 or
CHES pH 9.5
|
Resolution 2.74 Å
R-free 0.230
|
|
5JSB
Crystal structure of Mcl1-inhibitor complex
Deposited 2016-05-07
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain G
172–350(179 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 9.5;298 K;1.27 M sodium citrate, CAPS pH 10.5 or
CHES pH 9.5
|
Resolution 2.74 Å
R-free 0.230
|
|
5JSB
Crystal structure of Mcl1-inhibitor complex
Deposited 2016-05-07
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 5
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain I
172–350(179 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 9.5;298 K;1.27 M sodium citrate, CAPS pH 10.5 or
CHES pH 9.5
|
Resolution 2.74 Å
R-free 0.230
|
|
5JSB
Crystal structure of Mcl1-inhibitor complex
Deposited 2016-05-07
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 6
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain K
172–350(179 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 9.5;298 K;1.27 M sodium citrate, CAPS pH 10.5 or
CHES pH 9.5
|
Resolution 2.74 Å
R-free 0.230
|
|
5LOF
Crystal structure of the MBP-MCL1 complex with highly selective and potent inhibitor of MCL1
Deposited 2016-08-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–321(149 aa)
|
Mutation:K194A, K197A, R201A,K194A, K197A, R201A
|
70R (2~{R})-2-[5-[3-chloranyl-2-methyl-4-[2-(4-methylpiperazin-1-yl)ethoxy]phenyl]-6-(5-fluoranylfuran-2-yl)thieno[2,3-d]pyrimidin-4-yl]oxy-3-[2-[[2-[2,2,2-tris(fluoranyl)ethyl]pyrazol-3-yl]methoxy]phenyl]propanoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;284 K;25% PEG3350, 0.2M Magnesium Formate, 1mM Maltose
|
Resolution 2.20 Å
R-free 0.235
|
|
5MES
MCL1 FAB COMPLEX IN COMPLEX WITH COMPOUND 29
Deposited 2016-11-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
241–327(87 aa)
|
Not recorded
|
7LT (5~{R},13~{S},17~{S})-5-[[4-chloranyl-3-(2-phenylethyl)phenyl]methyl]-13-[(4-chlorophenyl)methyl]-8-methyl-1,4,8,12,16-pentazatricyclo[15.8.1.0^{20,25}]hexacosa-20(25),21,23-triene-3,7,15,26-tetrone × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;PEG 8K 10%w/v, PEG 1500 10%w/v
|
Resolution 2.24 Å
R-free 0.230
|
|
5MEV
MCL1 FAB COMPLEX IN COMPLEX WITH COMPOUND 21
Deposited 2016-11-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
241–327(87 aa)
|
Not recorded
|
7LW (5~{R},13~{S},17~{S})-5-[(3,4-dichlorophenyl)methyl]-8-methyl-13-[(4-methylsulfonylphenyl)methyl]-1,4,8,12,16-pentazatricyclo[15.8.1.0^{20,25}]hexacosa-20,22,24-triene-3,7,15,26-tetrone × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;PEG 8K 10%w/v, PEG 1500 10%w/v
|
Resolution 2.94 Å
R-free 0.302
|
|
5UUM
Human Mcl-1 in complex with a Bfl-1-specific selected peptide
Deposited 2017-02-17
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
172–325(154 aa)
Fragment:UNP residues 172-325
|
Not recorded
|
ZN ZINC ION × 4
SO4 SULFATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;0.2 M zinc sulfate, 0.1 M imidazole (pH 6.5), and 3% 6-aminohexanoic acid
|
Resolution 2.35 Å
R-free 0.251
|
|
5UUM
Human Mcl-1 in complex with a Bfl-1-specific selected peptide
Deposited 2017-02-17
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
172–325(154 aa)
Fragment:UNP residues 172-325
|
Not recorded
|
ZN ZINC ION × 4
SO4 SULFATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;0.2 M zinc sulfate, 0.1 M imidazole (pH 6.5), and 3% 6-aminohexanoic acid
|
Resolution 2.35 Å
R-free 0.251
|
|
5VKC
Crystal structure of MCL-1 in complex with a BIM competitive inhibitor
Deposited 2017-04-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
174–326(153 aa)
Chain B
174–326(153 aa)
|
Not recorded
|
9EA 7-(3-{[4-(4-acetylpiperazin-1-yl)phenoxy]methyl}-1,5-dimethyl-1H-pyrazol-4-yl)-3-{3-[(naphthalen-1-yl)oxy]propyl}-1-[(pyridin-3-yl)methyl]-1H-indole-2-carboxylic acid × 2
ZN ZINC ION × 10
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 8.8;277 K;7%(w/v) PEG 8000, 0.1M Tris-HCl, pH 8.8, 0.2M zinc acetate
|
Resolution 2.31 Å
R-free 0.222
|
|
5VX2
Mcl-1 in complex with Bim-h3Pc-RT
Deposited 2017-05-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain A
209–327(119 aa)
Fragment:UNP P97287 residues 152-189, UNP Q07820 residues 209-327
Chain C
209–327(119 aa)
Fragment:UNP P97287 residues 152-189, UNP Q07820 residues 209-327
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;281 K;20 % PEG 3000, 100 mM trisodium citrate buffered with citric acid pH 5.5
|
Resolution 1.85 Å
R-free 0.210
|
|
5W89
Crystal structure of human Mcl-1 in complex with modified Bim BH3 peptide SAH-MS1-18
Deposited 2017-06-21
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
172–321(150 aa)
Fragment:UNP residues 172-321
|
Not recorded
|
ZN ZINC ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 9;300 K;Reservior: 25% PEG 3350, 50mM Tris pH 9.0, 0.2 M Ammonium acetate; Protein: 408 uM in 20 mM TRis , 10 mM TCEP, 5mM Zn2SO4
|
Resolution 1.42 Å
R-free 0.185
|
|
5W8F
Crystal structure of human Mcl-1 in complex with modified Bim BH3 peptide SAH-MS1-14
Deposited 2017-06-21
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
172–320(149 aa)
Fragment:UNP residues 172-320
|
Not recorded
|
ZN ZINC ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 9;300 K;Reservior : 25% PEG 3350, 50mM Tris pH 9.0, 0.2 M Ammonium acetate; Protein: 408 uM in 20 mM TRis , 10 mM TCEP, 5mM Zn2SO4
|
Resolution 1.85 Å
R-free 0.289
|
|
6B4L
Crystal structure of MCL-1 in complex with a BIM competitive inhibitor
Deposited 2017-09-26
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
174–326(153 aa)
Fragment:unp residues 174-326
|
Not recorded
|
CJY 3-{3-[(naphthalen-1-yl)oxy]propyl}-1H-indole-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 9.5;277 K;18%(w/v)PEG 8000, 0.1M CHES pH 9.5, 4%(v/v) 2,2,2 trifluoroethanol
|
Resolution 2.25 Å
R-free 0.258
|
|
6B4L
Crystal structure of MCL-1 in complex with a BIM competitive inhibitor
Deposited 2017-09-26
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
174–326(153 aa)
Fragment:unp residues 174-326
|
Not recorded
|
CJY 3-{3-[(naphthalen-1-yl)oxy]propyl}-1H-indole-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 9.5;277 K;18%(w/v)PEG 8000, 0.1M CHES pH 9.5, 4%(v/v) 2,2,2 trifluoroethanol
|
Resolution 2.25 Å
R-free 0.258
|
|
6B4U
Crystal structure of MCL-1 in complex with a BIM competitive inhibitor
Deposited 2017-09-27
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
174–326(153 aa)
|
Not recorded
|
CN7 7-(2-methylphenyl)-1-[2-(morpholin-4-yl)ethyl]-3-{3-[(naphthalen-1-yl)oxy]propyl}-1H-indole-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 9.5;277 K;18%(w/v)PEG 8000, 0.1M CHES pH 9.5, 4%(v/v)1,1,1,3,3,3 hexafluor-2-propanol
|
Resolution 1.95 Å
R-free 0.254
|
|
6BW2
Mcl-1 complexed with small molecules
Deposited 2017-12-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
172–327(156 aa)
|
Not recorded
|
ECY 3-({11-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1-oxo-7-(1,3,5-trimethyl-1H-pyrazol-4-yl)-4,5-dihydro-1H-[1,4]diazepino[1,2-a]indol-2(3H)-yl}methyl)benzoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291 K;20%-30% PEG 3350, Magnesium chloride, Bis-Tris
|
Resolution 2.75 Å
R-free 0.262
|
|
6BW2
Mcl-1 complexed with small molecules
Deposited 2017-12-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
172–327(156 aa)
|
Not recorded
|
ECY 3-({11-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1-oxo-7-(1,3,5-trimethyl-1H-pyrazol-4-yl)-4,5-dihydro-1H-[1,4]diazepino[1,2-a]indol-2(3H)-yl}methyl)benzoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291 K;20%-30% PEG 3350, Magnesium chloride, Bis-Tris
|
Resolution 2.75 Å
R-free 0.262
|
|
6BW2
Mcl-1 complexed with small molecules
Deposited 2017-12-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
172–327(156 aa)
|
Not recorded
|
ECY 3-({11-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1-oxo-7-(1,3,5-trimethyl-1H-pyrazol-4-yl)-4,5-dihydro-1H-[1,4]diazepino[1,2-a]indol-2(3H)-yl}methyl)benzoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291 K;20%-30% PEG 3350, Magnesium chloride, Bis-Tris
|
Resolution 2.75 Å
R-free 0.262
|
|
6BW2
Mcl-1 complexed with small molecules
Deposited 2017-12-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
172–327(156 aa)
|
Not recorded
|
ECY 3-({11-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1-oxo-7-(1,3,5-trimethyl-1H-pyrazol-4-yl)-4,5-dihydro-1H-[1,4]diazepino[1,2-a]indol-2(3H)-yl}methyl)benzoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291 K;20%-30% PEG 3350, Magnesium chloride, Bis-Tris
|
Resolution 2.75 Å
R-free 0.262
|
|
6BW8
Mcl-1 complexed with small molecules
Deposited 2017-12-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
172–327(156 aa)
|
Not recorded
|
ECM 7-{8-chloro-11-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1-oxo-7-(1,3,5-trimethyl-1H-pyrazol-4-yl)-4,5-dihydro-1H-[1,4]diazepino[1,2-a]indol-2(3H)-yl}-1-methyl-1H-indole-3-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;291 K;20%-30% PEG3350, Magnesium chloride, Bis-Tris
|
Resolution 2.90 Å
R-free 0.251
|
|
6BW8
Mcl-1 complexed with small molecules
Deposited 2017-12-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
172–327(156 aa)
|
Not recorded
|
ECM 7-{8-chloro-11-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1-oxo-7-(1,3,5-trimethyl-1H-pyrazol-4-yl)-4,5-dihydro-1H-[1,4]diazepino[1,2-a]indol-2(3H)-yl}-1-methyl-1H-indole-3-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;291 K;20%-30% PEG3350, Magnesium chloride, Bis-Tris
|
Resolution 2.90 Å
R-free 0.251
|
|
6BW8
Mcl-1 complexed with small molecules
Deposited 2017-12-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
172–327(156 aa)
|
Not recorded
|
ECM 7-{8-chloro-11-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1-oxo-7-(1,3,5-trimethyl-1H-pyrazol-4-yl)-4,5-dihydro-1H-[1,4]diazepino[1,2-a]indol-2(3H)-yl}-1-methyl-1H-indole-3-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;291 K;20%-30% PEG3350, Magnesium chloride, Bis-Tris
|
Resolution 2.90 Å
R-free 0.251
|
|
6BW8
Mcl-1 complexed with small molecules
Deposited 2017-12-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
172–327(156 aa)
|
Not recorded
|
ECM 7-{8-chloro-11-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1-oxo-7-(1,3,5-trimethyl-1H-pyrazol-4-yl)-4,5-dihydro-1H-[1,4]diazepino[1,2-a]indol-2(3H)-yl}-1-methyl-1H-indole-3-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;291 K;20%-30% PEG3350, Magnesium chloride, Bis-Tris
|
Resolution 2.90 Å
R-free 0.251
|
|
6FS0
INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION PROTEIN FABCOMPLEX IN COMPLEX WITH AZD5991
Deposited 2018-02-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
174–324(151 aa)
|
Not recorded
|
E4W AZD5991 × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;293 K;0.1M sodium acetate-HCL pH 4.6 18%W/V
PEG-8000 0.2M calcium acetate
|
Resolution 2.25 Å
R-free 0.233
|
|
6FS1
MCL1 in complex with an indole acid ligand
Deposited 2018-02-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
174–321(148 aa)
|
Not recorded
|
E4Q 7-[3-[(1,5-dimethylpyrazol-3-yl)methylsulfanylmethyl]-1,5-dimethyl-pyrazol-4-yl]-3-(3-naphthalen-1-yloxypropyl)-1~{H}-indole-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;22% PEG MME 5K, 2% PEG 400, 0.1M MES pH 5.6
|
Resolution 1.60 Å
R-free 0.226
|
|
6FS1
MCL1 in complex with an indole acid ligand
Deposited 2018-02-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
174–321(148 aa)
|
Not recorded
|
E4Q 7-[3-[(1,5-dimethylpyrazol-3-yl)methylsulfanylmethyl]-1,5-dimethyl-pyrazol-4-yl]-3-(3-naphthalen-1-yloxypropyl)-1~{H}-indole-2-carboxylic acid × 1
EDO 1,2-ETHANEDIOL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;22% PEG MME 5K, 2% PEG 400, 0.1M MES pH 5.6
|
Resolution 1.60 Å
R-free 0.226
|
|
6FS2
MCL1 in complex with indole acid ligand
Deposited 2018-02-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
174–325(152 aa)
|
Not recorded
|
E4K 7-(2-methylphenyl)-3-[3-(5,6,7,8-tetrahydronaphthalen-1-yloxy)propyl]-1~{H}-indole-2-carboxylic acid × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;unknown
|
Resolution 2.55 Å
R-free 0.254
|
|
6FS2
MCL1 in complex with indole acid ligand
Deposited 2018-02-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
174–325(152 aa)
|
Not recorded
|
E4K 7-(2-methylphenyl)-3-[3-(5,6,7,8-tetrahydronaphthalen-1-yloxy)propyl]-1~{H}-indole-2-carboxylic acid × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;unknown
|
Resolution 2.55 Å
R-free 0.254
|
|
6MBD
Human Mcl-1 in complex with the designed peptide dM1
Deposited 2018-08-29
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
172–324(153 aa)
|
Not recorded
|
ZN ZINC ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;295 K;25% PEG 3350, 50 mM BIS-Tris pH 8.5, 50 mM NH4CH3CO2
|
Resolution 1.95 Å
R-free 0.240
|
|
6MBD
Human Mcl-1 in complex with the designed peptide dM1
Deposited 2018-08-29
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
172–324(153 aa)
|
Not recorded
|
ZN ZINC ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;295 K;25% PEG 3350, 50 mM BIS-Tris pH 8.5, 50 mM NH4CH3CO2
|
Resolution 1.95 Å
R-free 0.240
|
|
6MBE
Human Mcl-1 in complex with the designed peptide dM7
Deposited 2018-08-29
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
172–323(152 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;295 K;1.4 M sodium citrate pH 6.5, 0.1 M HEPES pH 7.5
|
Resolution 2.25 Å
R-free 0.221
|
|
6NE5
Discovery of Potent Myeloid Cell Leukemia-1 (Mcl-1) Inhibitors that Demonstrate in vivo Activity in Mouse Xenograft Models of Human Cancer
Deposited 2018-12-17
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
172–328(157 aa)
|
Not recorded
|
KJP 3-[(4R)-7-chloro-10-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-4-methyl-1-oxo-6-(1,3,5-trimethyl-1H-pyrazol-4-yl)-3,4-dihydropyrazino[1,2-a]indol-2(1H)-yl]-1-methyl-1H-indole-5-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 7;291 K;PEG 3350, MgCl2, Bis-Tris6.5
|
Resolution 1.85 Å
R-free 0.207
|
|
6NE5
Discovery of Potent Myeloid Cell Leukemia-1 (Mcl-1) Inhibitors that Demonstrate in vivo Activity in Mouse Xenograft Models of Human Cancer
Deposited 2018-12-17
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
172–328(157 aa)
|
Not recorded
|
KJP 3-[(4R)-7-chloro-10-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-4-methyl-1-oxo-6-(1,3,5-trimethyl-1H-pyrazol-4-yl)-3,4-dihydropyrazino[1,2-a]indol-2(1H)-yl]-1-methyl-1H-indole-5-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 7;291 K;PEG 3350, MgCl2, Bis-Tris6.5
|
Resolution 1.85 Å
R-free 0.207
|
|
6NE5
Discovery of Potent Myeloid Cell Leukemia-1 (Mcl-1) Inhibitors that Demonstrate in vivo Activity in Mouse Xenograft Models of Human Cancer
Deposited 2018-12-17
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
172–328(157 aa)
|
Not recorded
|
KJP 3-[(4R)-7-chloro-10-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-4-methyl-1-oxo-6-(1,3,5-trimethyl-1H-pyrazol-4-yl)-3,4-dihydropyrazino[1,2-a]indol-2(1H)-yl]-1-methyl-1H-indole-5-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 7;291 K;PEG 3350, MgCl2, Bis-Tris6.5
|
Resolution 1.85 Å
R-free 0.207
|
|
6NE5
Discovery of Potent Myeloid Cell Leukemia-1 (Mcl-1) Inhibitors that Demonstrate in vivo Activity in Mouse Xenograft Models of Human Cancer
Deposited 2018-12-17
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
172–328(157 aa)
|
Not recorded
|
KJP 3-[(4R)-7-chloro-10-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-4-methyl-1-oxo-6-(1,3,5-trimethyl-1H-pyrazol-4-yl)-3,4-dihydropyrazino[1,2-a]indol-2(1H)-yl]-1-methyl-1H-indole-5-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 7;291 K;PEG 3350, MgCl2, Bis-Tris6.5
|
Resolution 1.85 Å
R-free 0.207
|
|
6O4U
Co-crystal structure of Mcl1 with inhibitor
Deposited 2019-03-01
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
172–327(156 aa)
Fragment:residues 172-327
|
Not recorded
|
LMV (2~{S})-4-(cyclobutylmethyl)-2-(2,4-dichlorophenyl)-~{N}-(2-methylpropylsulfonyl)-2,3-dihydro-1,4-benzoxazine-6-carboxamide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;277 K;100 mM Tris pH 8.0,
3% Methanol,
30-42.5% PEG6K
|
Resolution 1.70 Å
|
|
6O4U
Co-crystal structure of Mcl1 with inhibitor
Deposited 2019-03-01
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
172–327(156 aa)
Fragment:residues 172-327
|
Not recorded
|
LMV (2~{S})-4-(cyclobutylmethyl)-2-(2,4-dichlorophenyl)-~{N}-(2-methylpropylsulfonyl)-2,3-dihydro-1,4-benzoxazine-6-carboxamide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;277 K;100 mM Tris pH 8.0,
3% Methanol,
30-42.5% PEG6K
|
Resolution 1.70 Å
|
|
6O6F
Co-crystal structure of Mcl1 with inhibitor
Deposited 2019-03-06
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
172–327(156 aa)
Fragment:residues 172-327
|
Not recorded
|
LOD (3S)-5'-chloro-5-(cyclobutylmethyl)-2',3',4,5-tetrahydro-2H-spiro[1,5-benzoxazepine-3,1'-indene]-7-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;100 mM Tris pH 8.0,
3% Methanol,
30-42.5% PEG6000
|
Resolution 1.60 Å
R-free 0.230
|
|
6O6F
Co-crystal structure of Mcl1 with inhibitor
Deposited 2019-03-06
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
172–327(156 aa)
Fragment:residues 172-327
|
Not recorded
|
LOD (3S)-5'-chloro-5-(cyclobutylmethyl)-2',3',4,5-tetrahydro-2H-spiro[1,5-benzoxazepine-3,1'-indene]-7-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;100 mM Tris pH 8.0,
3% Methanol,
30-42.5% PEG6000
|
Resolution 1.60 Å
R-free 0.230
|
|
6O6G
Co-crystal structure of Mcl1 with inhibitor
Deposited 2019-03-06
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
172–327(156 aa)
Fragment:residues 172-327
|
Not recorded
|
LOJ (3S)-5-(cyclobutylmethyl)-3-(2,4-dichlorophenyl)-2,3,4,5-tetrahydro-1,5-benzoxazepine-7-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;100 mM Tris, pH 8.0,
3% Methanol,
30-42.5% PEG 6000
|
Resolution 2.40 Å
R-free 0.295
|
|
6OQB
Co-crystal structure of Mcl1 with inhibitor 10
Deposited 2019-04-26
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
171–327(157 aa)
Fragment:residues 171-327
|
Not recorded
|
N0J (4S,7aR,9aR,10S,11E,15R)-6'-chloro-15-ethyl-10-hydroxy-3',4',7a,8,9,9a,10,13,14,15-decahydro-2'H,3H,5H-spiro[1,19-(ethanediylidene)-16lambda~6~-cyclobuta[i][1,4]oxazepino[3,4-f][1,2,7]thiadiazacyclohexadecine-4,1'-naphthalene]-16,16,18(7H,17H)-trione × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;277 K;100 mM Tris, pH 8.0
3% Methanol
30%-42.5% PEG6000
|
Resolution 1.60 Å
R-free 0.211
|
|
6OQB
Co-crystal structure of Mcl1 with inhibitor 10
Deposited 2019-04-26
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
171–327(157 aa)
Fragment:residues 171-327
|
Not recorded
|
N0J (4S,7aR,9aR,10S,11E,15R)-6'-chloro-15-ethyl-10-hydroxy-3',4',7a,8,9,9a,10,13,14,15-decahydro-2'H,3H,5H-spiro[1,19-(ethanediylidene)-16lambda~6~-cyclobuta[i][1,4]oxazepino[3,4-f][1,2,7]thiadiazacyclohexadecine-4,1'-naphthalene]-16,16,18(7H,17H)-trione × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;277 K;100 mM Tris, pH 8.0
3% Methanol
30%-42.5% PEG6000
|
Resolution 1.60 Å
R-free 0.211
|
|
6OQC
Crystal structure of Mcl1 with inhibitor 9
Deposited 2019-04-26
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
171–327(157 aa)
Fragment:residues 171-327
|
Not recorded
|
N0S (4S,7aR,9aR,10S,11E,15R)-6'-chloro-10-hydroxy-15-methyl-3',4',7a,8,9,9a,10,13,14,15-decahydro-2'H,3H,5H-spiro[1,19-(ethanediylidene)-16lambda~6~-cyclobuta[i][1,4]oxazepino[3,4-f][1,2,7]thiadiazacyclohexadecine-4,1'-naphthalene]-16,16,18(7H,17H)-trione × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;100 mM Tris, pH 8.0
3% Methanol
30%-42.5% PEG6000
|
Resolution 1.80 Å
R-free 0.233
|
|
6OQC
Crystal structure of Mcl1 with inhibitor 9
Deposited 2019-04-26
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
171–327(157 aa)
Fragment:residues 171-327
|
Not recorded
|
N0S (4S,7aR,9aR,10S,11E,15R)-6'-chloro-10-hydroxy-15-methyl-3',4',7a,8,9,9a,10,13,14,15-decahydro-2'H,3H,5H-spiro[1,19-(ethanediylidene)-16lambda~6~-cyclobuta[i][1,4]oxazepino[3,4-f][1,2,7]thiadiazacyclohexadecine-4,1'-naphthalene]-16,16,18(7H,17H)-trione × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;100 mM Tris, pH 8.0
3% Methanol
30%-42.5% PEG6000
|
Resolution 1.80 Å
R-free 0.233
|
|
6OQD
Crystal structure of Mcl1 with inhibitor 8
Deposited 2019-04-26
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
171–327(157 aa)
Fragment:residues 171-327
|
Not recorded
|
N0M (4S,7aR,9aR,10S,15R)-6'-chloro-10-hydroxy-15-methyl-3',4',7a,8,9,9a,10,11,12,13,14,15-dodecahydro-2'H,3H,5H-spiro[1,19-(ethanediylidene)-16lambda~6~-cyclobuta[i][1,4]oxazepino[3,4-f][1,2,7]thiadiazacyclohexadecine-4,1'-naphthalene]-16,16,18(7H,17H)-trione × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;100 mM Tris, pH 8.0
3% Methanol
30%-42.5% PEG 6000
|
Resolution 1.48 Å
R-free 0.235
|
|
6OQD
Crystal structure of Mcl1 with inhibitor 8
Deposited 2019-04-26
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
171–327(157 aa)
Fragment:residues 171-327
|
Not recorded
|
N0M (4S,7aR,9aR,10S,15R)-6'-chloro-10-hydroxy-15-methyl-3',4',7a,8,9,9a,10,11,12,13,14,15-dodecahydro-2'H,3H,5H-spiro[1,19-(ethanediylidene)-16lambda~6~-cyclobuta[i][1,4]oxazepino[3,4-f][1,2,7]thiadiazacyclohexadecine-4,1'-naphthalene]-16,16,18(7H,17H)-trione × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;100 mM Tris, pH 8.0
3% Methanol
30%-42.5% PEG 6000
|
Resolution 1.48 Å
R-free 0.235
|
|
6OQN
Crystal structure of Mcl1 with inhibitor 7
Deposited 2019-04-26
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
171–327(157 aa)
Fragment:residues 171-327
|
Not recorded
|
N0P (4S)-5'-chloro-2',3',7,8,9,10,11,12-octahydro-3H,5H,14H-spiro[1,19-etheno-16lambda~6~-[1,4]oxazepino[3,4-i][1,4,5,10]oxathiadiazacyclohexadecine-4,1'-indene]-16,16,18(15H,17H)-trione × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;100 mM Tris, pH 8.0
3% Methanol
30%-42.5% PEG 6000
|
Resolution 1.70 Å
R-free 0.290
|
|
6OQN
Crystal structure of Mcl1 with inhibitor 7
Deposited 2019-04-26
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
171–327(157 aa)
Fragment:residues 171-327
|
Not recorded
|
N0P (4S)-5'-chloro-2',3',7,8,9,10,11,12-octahydro-3H,5H,14H-spiro[1,19-etheno-16lambda~6~-[1,4]oxazepino[3,4-i][1,4,5,10]oxathiadiazacyclohexadecine-4,1'-indene]-16,16,18(15H,17H)-trione × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;100 mM Tris, pH 8.0
3% Methanol
30%-42.5% PEG 6000
|
Resolution 1.70 Å
R-free 0.290
|
|
6OVC
hMcl1 inhibitor complex
Deposited 2019-05-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
171–327(157 aa)
|
Not recorded
|
N8J (2S)-N-(benzylsulfonyl)-4-(cyclobutylmethyl)-2-(2,4-dichlorophenyl)-3,4-dihydro-2H-1,4-benzoxazine-6-carboxamide × 1
|
SOLUTION NMR
NMR measurement conditions
pH 7.4;298 K;Ionic strength (raw mmCIF value) 50;Pressure 1
NMR measurement conditions
pH 7.4;310 K;Ionic strength (raw mmCIF value) 50;Pressure 1
NMR sample composition
0.5 mM [U-99% 13C; U-99% 15N] human Mcl1 protein, 0.5 mM small molecule, 20 mM sodium phosphate, 50 mM sodium chloride, 90% H2O/10% D2O | 90% H2O/10% D2O
NMR sample composition
0.5 mM [U-99% 13C; U-99% 15N] hMcl1 protein, 0.25 mg/L small molecule, 90% H2O/10% D2O | 90% H2O/10% D2O
|
Resolution not provided
|
|
6P3P
Crystal structure of Mcl-1 in complex with compound 65
Deposited 2019-05-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
171–327(157 aa)
|
Mutation:E171S
|
NQJ methyl N-(5-{[2-chloro-5-(trifluoromethyl)phenyl]sulfamoyl}-4-methylthiophene-2-carbonyl)-D-phenylalaninate × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8.5;277 K;100 mM Bicine pH 8.5, 35% PEG 1500 and 10% ethanol
|
Resolution 1.61 Å
R-free 0.213
|
|
6QB3
Apo Mcl1 in a complex with a scFv
Deposited 2018-12-20
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
174–327(154 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;PCPT 0.1M pH 7.5, PEG 3350 15%w/v, MgCl2 0.1M
|
Resolution 1.90 Å
R-free 0.205
|
|
6QB4
Mcl1-scFv complex with an indole acid inhibitor
Deposited 2018-12-20
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
174–327(154 aa)
|
Not recorded
|
HVN 3-[3-[[(1~{R})-1,2,3,4-tetrahydronaphthalen-1-yl]oxy]propyl]-7-(1,3,5-trimethylpyrazol-4-yl)-1~{H}-indole-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;PCPT 0.1M pH 7.5, PEG 3350 15%w/v, MgCl2 0.1M
|
Resolution 2.38 Å
R-free 0.231
|
|
6QB6
Mcl1 in complex with a Fab
Deposited 2018-12-20
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
174–327(154 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;54.5 mM PCTP4 45.5 mM PCTP10 15 %w/v PEG-2000 MME
|
Resolution 2.24 Å
R-free 0.232
|
|
6QFC
Structure of an anti-Mcl1 scFv
Deposited 2019-01-09
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
174–327(154 aa)
|
Not recorded
|
DMS DIMETHYL SULFOXIDE × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;12% PEG10k, 0.1M PCTP pH 7.4, 10% DMSO
|
Resolution 1.96 Å
R-free 0.219
|
|
6QFI
Structure of human Mcl-1 in complex with BIM BH3 peptide
Deposited 2019-01-10
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
171–327(157 aa)
|
Not recorded
|
ZN ZINC ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.75;293 K;0.2M zinc acetate, 0.2M Imidazole pH 5.75
|
Resolution 2.40 Å
R-free 0.236
|
|
6QFM
Structure of human Mcl-1 in complex with PUMA BH3 peptide
Deposited 2019-01-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
171–327(157 aa)
|
Mutation:E173D, D241G, L246F, I251V, S255K, T280S, I281V, C286F, S293T, E322Q
|
ZN ZINC ION × 3
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;100 mM imidazole buffer pH 7.0, 50 mM zinc acetate and 20-25% polyethylene glycol (PEG) 3350
|
Resolution 2.00 Å
R-free 0.261
|
|
6QFQ
Structure of human Mcl-1 in complex with indole acid inhibitor
Deposited 2019-01-10
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
171–327(157 aa)
|
Not recorded
|
J3E 7-(3,5-dimethyl-1~{H}-pyrazol-4-yl)-3-(3-naphthalen-1-yloxypropyl)-1~{H}-indole-2-carboxylic acid × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;292 K;0.1M BisTRIS buffer pH 6.5, 20% PEGMME5K
|
Resolution 1.60 Å
R-free 0.255
|
|
6QGD
Structure of human Mcl-1 in complex with thienopyrimidine inhibitor
Deposited 2019-01-11
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–321(149 aa)
|
Not recorded
|
J1N 2-[(6-ethyl-5-phenyl-thieno[2,3-d]pyrimidin-4-yl)amino]-3-oxidanyl-propanoic acid × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;284 K;25% PEG3350, 0.2M MAGNESIUM FORMATE, 1MM MALTOSE
|
Resolution 1.80 Å
R-free 0.208
|
|
6QXJ
Structure of MBP-Mcl-1 in complex with compound 6a
Deposited 2019-03-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–321(149 aa)
|
Mutation:K194A, K197A, R201A,K194A, K197A, R201A
|
JKQ (2~{R})-2-[[6-ethyl-5-(1~{H}-indol-5-yl)thieno[2,3-d]pyrimidin-4-yl]amino]propanoic acid × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;279 K;25% PEG3350, 0.2M MAGNESIUM FORMATE,1MM MALTOSE
|
Resolution 1.70 Å
R-free 0.203
|
|
6QYK
Structure of MBP-Mcl-1 in complex with compound 7a
Deposited 2019-03-09
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–321(149 aa)
|
Not recorded
|
JLB (2~{R})-2-[6-ethyl-5-(1~{H}-indol-5-yl)thieno[2,3-d]pyrimidin-4-yl]oxypropanoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;284 K;25% PEG3350, 0.2M MAGNESIUM FORMATE, 1MM MALTOSE
|
Resolution 2.30 Å
R-free 0.266
|
|
6QYL
Structure of MBP-Mcl-1 in complex with compound 8a
Deposited 2019-03-09
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–321(149 aa)
|
Not recorded
|
JLE (2~{R})-2-[[6-ethyl-5-(1~{H}-indol-4-yl)thieno[2,3-d]pyrimidin-4-yl]amino]-3-phenyl-propanoic acid × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;284 K;25% PEG3350, 0.2M MAGNESIUM FORMATE, 1MM MALTOSE
|
Resolution 2.20 Å
R-free 0.235
|
|
6QYN
Structure of MBP-Mcl-1 in complex with compound 10d
Deposited 2019-03-09
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–321(149 aa)
|
Not recorded
|
JL8 (2~{R})-2-[5-(3-chloranyl-2-methyl-4-oxidanyl-phenyl)-6-ethyl-thieno[2,3-d]pyrimidin-4-yl]oxy-3-phenyl-propanoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;284 K;25% PEG3350, 0.2M MAGNESIUM FORMATE, 1MM MALTOSE
|
Resolution 2.50 Å
R-free 0.251
|
|
6QYO
Structure of MBP-Mcl-1 in complex with compound 18a
Deposited 2019-03-09
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–321(149 aa)
|
Not recorded
|
JLH (2~{R})-2-[5-[3-chloranyl-2-methyl-4-[2-(4-methylpiperazin-1-yl)ethoxy]phenyl]-6-ethyl-thieno[2,3-d]pyrimidin-4-yl]oxy-3-phenyl-propanoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;284 K;25% PEG3350, 0.2M MAGNESIUM FORMATE, 1MM MALTOSE
|
Resolution 2.10 Å
R-free 0.221
|
|
6QYP
Structure of Mcl-1 in complex with compound 13
Deposited 2019-03-09
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
171–327(157 aa)
|
Not recorded
|
JL5 (2~{R})-2-[5-[3-chloranyl-2-methyl-5-(4-methylpiperazin-1-yl)-4-oxidanyl-phenyl]-6-ethyl-thieno[2,3-d]pyrimidin-4-yl]oxy-3-phenyl-propanoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;0.05M BIS-TRIS pH 6.5; 30% Pentaerythritol ethoxylate (15/4 EO/OH), 0.05M Ammonium Sulphate
|
Resolution 2.20 Å
R-free 0.253
|
|
6QZ5
Structure of Mcl-1 in complex with compound 8a
Deposited 2019-03-11
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
171–327(157 aa)
|
Not recorded
|
JLE (2~{R})-2-[[6-ethyl-5-(1~{H}-indol-4-yl)thieno[2,3-d]pyrimidin-4-yl]amino]-3-phenyl-propanoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;0.05M BIS-TRIS pH 6.5, 30% v/v Pentaerythritol ethoxylate (15/4 EO/OH), 0.05M Ammonium Sulphate
|
Resolution 2.00 Å
R-free 0.225
|
|
6QZ6
Structure of Mcl-1 in complex with compound 8b
Deposited 2019-03-11
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
171–327(157 aa)
|
Not recorded
|
JLE (2~{R})-2-[[6-ethyl-5-(1~{H}-indol-4-yl)thieno[2,3-d]pyrimidin-4-yl]amino]-3-phenyl-propanoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;0.05M BIS-TRIS pH 6.5, 30% v/v Pentaerythritol ethoxylate (15/4 EO/OH), 0.05M Ammonium Sulphate
|
Resolution 1.90 Å
R-free 0.254
|
|
6QZ7
Structure of MBP-Mcl-1 in complex with compound 8b
Deposited 2019-03-11
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–321(149 aa)
|
Not recorded
|
JLE (2~{R})-2-[[6-ethyl-5-(1~{H}-indol-4-yl)thieno[2,3-d]pyrimidin-4-yl]amino]-3-phenyl-propanoic acid × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;284 K;25% PEG3350, 0.2M MAGNESIUM FORMATE, 1MM MALTOSE
|
Resolution 2.20 Å
R-free 0.211
|
|
6QZ8
Structure of Mcl-1 in complex with compound 10d
Deposited 2019-03-11
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
171–327(157 aa)
|
Not recorded
|
JL8 (2~{R})-2-[5-(3-chloranyl-2-methyl-4-oxidanyl-phenyl)-6-ethyl-thieno[2,3-d]pyrimidin-4-yl]oxy-3-phenyl-propanoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;0.05M BIS-TRIS pH 6.5, 30% v/v Pentaerythritol ethoxylate (15/4 EO/OH), 0.05M Ammonium Sulphate
|
Resolution 2.15 Å
R-free 0.286
|
|
6QZB
Structure of Mcl-1 in complex with compound 8d
Deposited 2019-03-11
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
171–327(157 aa)
|
Not recorded
|
JLK (2~{R})-2-[[6-ethyl-5-(2-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino]-3-phenyl-propanoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;0.05M BIS-TRIS pH 6.5, 30% v/v Pentaerythritol ethoxylate (15/4 EO/OH), 0.05M Ammonium Sulphate
|
Resolution 2.00 Å
R-free 0.269
|
|
6STJ
Selective Affimers Recognize BCL-2 Family Proteins Through Non-Canonical Structural Motifs
Deposited 2019-09-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 8
PDB declaration: octameric
|
Chain A
173–327(155 aa)
Chain B
173–327(155 aa)
Chain C
173–327(155 aa)
Chain D
173–327(155 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;293 K;30% PEG MME 2K, 0.2M ammonium sulfate, 0.1M sodium acetate pH4.6
|
Resolution 2.20 Å
R-free 0.289
|
|
6U63
Mcl-1 bound to compound 17
Deposited 2019-08-29
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
171–323(153 aa)
|
Not recorded
|
Q0D 2-{[(naphthalen-2-yl)sulfonyl]amino}-5-[(2-phenylethyl)sulfanyl]benzoic acid × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8;293 K;23 % PEG 3350, 0.1 M Tris pH 8.0
|
Resolution 2.75 Å
R-free 0.262
|
|
6U63
Mcl-1 bound to compound 17
Deposited 2019-08-29
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
171–323(153 aa)
|
Not recorded
|
Q0D 2-{[(naphthalen-2-yl)sulfonyl]amino}-5-[(2-phenylethyl)sulfanyl]benzoic acid × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8;293 K;23 % PEG 3350, 0.1 M Tris pH 8.0
|
Resolution 2.75 Å
R-free 0.262
|
|
6U63
Mcl-1 bound to compound 17
Deposited 2019-08-29
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
171–323(153 aa)
|
Not recorded
|
Q0D 2-{[(naphthalen-2-yl)sulfonyl]amino}-5-[(2-phenylethyl)sulfanyl]benzoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8;293 K;23 % PEG 3350, 0.1 M Tris pH 8.0
|
Resolution 2.75 Å
R-free 0.262
|
|
6U63
Mcl-1 bound to compound 17
Deposited 2019-08-29
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
171–323(153 aa)
|
Not recorded
|
Q0D 2-{[(naphthalen-2-yl)sulfonyl]amino}-5-[(2-phenylethyl)sulfanyl]benzoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8;293 K;23 % PEG 3350, 0.1 M Tris pH 8.0
|
Resolution 2.75 Å
R-free 0.262
|
|
6U64
Mcl-1 bound to compound 17
Deposited 2019-08-29
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
171–320(150 aa)
|
Not recorded
|
Q0G 5-[(2-phenylethyl)sulfanyl]-2-{[(4-phenylpiperazin-1-yl)sulfonyl]amino}benzoic acid × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;30% PEG 3350, 0.2 mM MgCl2 and 0.1 M ADA pH 6.5
|
Resolution 2.55 Å
R-free 0.239
|
|
6U65
Mcl-1 bound to compound 19
Deposited 2019-08-29
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
171–323(153 aa)
|
Not recorded
|
Q0A 2-[({4-[(4-fluorophenyl)methyl]piperazin-1-yl}sulfonyl)amino]-5-[(2-phenylethyl)sulfanyl]benzoic acid × 1
EDO 1,2-ETHANEDIOL × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;18% PEG 3350, 200 mM NH4 Acetate, 100 mM Bis-Tris pH 6.5
|
Resolution 2.09 Å
R-free 0.222
|
|
6U65
Mcl-1 bound to compound 19
Deposited 2019-08-29
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
171–323(153 aa)
|
Not recorded
|
Q0A 2-[({4-[(4-fluorophenyl)methyl]piperazin-1-yl}sulfonyl)amino]-5-[(2-phenylethyl)sulfanyl]benzoic acid × 1
EDO 1,2-ETHANEDIOL × 1
ACT ACETATE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;18% PEG 3350, 200 mM NH4 Acetate, 100 mM Bis-Tris pH 6.5
|
Resolution 2.09 Å
R-free 0.222
|
|
6U65
Mcl-1 bound to compound 19
Deposited 2019-08-29
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
171–323(153 aa)
|
Not recorded
|
Q0A 2-[({4-[(4-fluorophenyl)methyl]piperazin-1-yl}sulfonyl)amino]-5-[(2-phenylethyl)sulfanyl]benzoic acid × 1
EDO 1,2-ETHANEDIOL × 1
ACT ACETATE ION × 2
PEG DI(HYDROXYETHYL)ETHER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;18% PEG 3350, 200 mM NH4 Acetate, 100 mM Bis-Tris pH 6.5
|
Resolution 2.09 Å
R-free 0.222
|
|
6U65
Mcl-1 bound to compound 19
Deposited 2019-08-29
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
171–323(153 aa)
|
Not recorded
|
Q0A 2-[({4-[(4-fluorophenyl)methyl]piperazin-1-yl}sulfonyl)amino]-5-[(2-phenylethyl)sulfanyl]benzoic acid × 1
EDO 1,2-ETHANEDIOL × 1
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;18% PEG 3350, 200 mM NH4 Acetate, 100 mM Bis-Tris pH 6.5
|
Resolution 2.09 Å
R-free 0.222
|
|
6U67
Mcl-1 bound to compound 24
Deposited 2019-08-29
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
171–323(153 aa)
|
Not recorded
|
Q01 2-({[4-(4-tert-butylphenyl)piperazin-1-yl]sulfonyl}amino)-5-{[3-oxo-3-(phenylamino)propyl]sulfanyl}benzoic acid × 3
BNL BIPHENYL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;293 K;20% (w/v) PEG-1000, 0.1 M Tris pH 7.0
|
Resolution 1.84 Å
R-free 0.222
|
|
6U67
Mcl-1 bound to compound 24
Deposited 2019-08-29
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
171–323(153 aa)
|
Not recorded
|
Q01 2-({[4-(4-tert-butylphenyl)piperazin-1-yl]sulfonyl}amino)-5-{[3-oxo-3-(phenylamino)propyl]sulfanyl}benzoic acid × 3
BNL BIPHENYL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;293 K;20% (w/v) PEG-1000, 0.1 M Tris pH 7.0
|
Resolution 1.84 Å
R-free 0.222
|
|
6U6F
The crystal structure of anti-apoptotic Mcl-1 protein in complex with 2, 5-substituted benzoic acid inhibitor 21
Deposited 2019-08-29
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
171–323(153 aa)
|
Not recorded
|
PZY 2-[({4-[(4-tert-butylphenyl)methyl]piperazin-1-yl}sulfonyl)amino]-5-[(2-phenylethyl)sulfanyl]benzoic acid × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;PEG3350 20-22.5%, 0.1 M Bis-Tris 6.5, 0.28 M Ammonium acetate
|
Resolution 2.90 Å
R-free 0.279
|
|
6U6F
The crystal structure of anti-apoptotic Mcl-1 protein in complex with 2, 5-substituted benzoic acid inhibitor 21
Deposited 2019-08-29
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
171–323(153 aa)
|
Not recorded
|
PZY 2-[({4-[(4-tert-butylphenyl)methyl]piperazin-1-yl}sulfonyl)amino]-5-[(2-phenylethyl)sulfanyl]benzoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;PEG3350 20-22.5%, 0.1 M Bis-Tris 6.5, 0.28 M Ammonium acetate
|
Resolution 2.90 Å
R-free 0.279
|
|
6U6F
The crystal structure of anti-apoptotic Mcl-1 protein in complex with 2, 5-substituted benzoic acid inhibitor 21
Deposited 2019-08-29
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
171–323(153 aa)
|
Not recorded
|
PZY 2-[({4-[(4-tert-butylphenyl)methyl]piperazin-1-yl}sulfonyl)amino]-5-[(2-phenylethyl)sulfanyl]benzoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;PEG3350 20-22.5%, 0.1 M Bis-Tris 6.5, 0.28 M Ammonium acetate
|
Resolution 2.90 Å
R-free 0.279
|
|
6UA3
Human Mcl-1 in complex with a modified Bim BH3 peptide
Deposited 2019-09-10
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
172–325(154 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;1.4 M Na Citrate pH 6.5
0.1 M HEPES pH 7.5
|
Resolution 1.55 Å
R-free 0.203
|
|
6UAB
Human Mcl-1 in complex with a modified unnatural Bim BH3 peptide
Deposited 2019-09-10
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
172–325(154 aa)
|
Not recorded
|
ADM ADAMANTANE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;1.4 M Na-citrate, pH 6.5
0.1 M HEPES, pH 7.5
|
Resolution 2.10 Å
R-free 0.240
|
|
6UD2
co-crystal structure of compound 1 bound to human Mcl-1
Deposited 2019-09-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
171–327(157 aa)
|
Not recorded
|
Q4D (4S,7aR,9aR,10S,11E,18R)-6'-chloro-10-[2-(3,3-difluoroazetidin-1-yl)ethoxy]-N-(dimethylsulfamoyl)-18-hydroxy-15-methyl-16-oxo-3',4',7,7a,8,9,9a,10,13,14,15,16,17,18-tetradecahydro-2'H,3H,5H-spiro[1,19-(ethanediylidene)cyclobuta[n][1,4]oxazepino[4,3-a][1,8]diazacyclohexadecine-4,1'-naphthalene]-18-carboxamide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;0.1 M Tris pH 8.0,
3% ethanol,
35% PEG6000
|
Resolution 1.70 Å
R-free 0.239
|
|
6UD2
co-crystal structure of compound 1 bound to human Mcl-1
Deposited 2019-09-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
171–327(157 aa)
|
Not recorded
|
Q4D (4S,7aR,9aR,10S,11E,18R)-6'-chloro-10-[2-(3,3-difluoroazetidin-1-yl)ethoxy]-N-(dimethylsulfamoyl)-18-hydroxy-15-methyl-16-oxo-3',4',7,7a,8,9,9a,10,13,14,15,16,17,18-tetradecahydro-2'H,3H,5H-spiro[1,19-(ethanediylidene)cyclobuta[n][1,4]oxazepino[4,3-a][1,8]diazacyclohexadecine-4,1'-naphthalene]-18-carboxamide × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;0.1 M Tris pH 8.0,
3% ethanol,
35% PEG6000
|
Resolution 1.70 Å
R-free 0.239
|
|
6UDI
X-ray co-crystal structure of compound 20 with Mcl-1
Deposited 2019-09-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
171–327(157 aa)
|
Not recorded
|
Q4S (4S,7aR,9aR,10S,11E,18R)-6'-chloro-N-(dimethylsulfamoyl)-18-hydroxy-10-methoxy-15-methyl-16-oxo-3',4',7,7a,8,9,9a,10,13,14,15,16,17,18-tetradecahydro-2'H,3H,5H-spiro[1,19-(ethanediylidene)cyclobuta[n][1,4]oxazepino[4,3-a][1,8]diazacyclohexadecine-4,1'-naphthalene]-18-carboxamide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;0.1 M Tris pH 8.0,
3% Methanol,
35% PEG6000
|
Resolution 1.94 Å
R-free 0.244
|
|
6UDI
X-ray co-crystal structure of compound 20 with Mcl-1
Deposited 2019-09-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
171–327(157 aa)
|
Not recorded
|
Q4S (4S,7aR,9aR,10S,11E,18R)-6'-chloro-N-(dimethylsulfamoyl)-18-hydroxy-10-methoxy-15-methyl-16-oxo-3',4',7,7a,8,9,9a,10,13,14,15,16,17,18-tetradecahydro-2'H,3H,5H-spiro[1,19-(ethanediylidene)cyclobuta[n][1,4]oxazepino[4,3-a][1,8]diazacyclohexadecine-4,1'-naphthalene]-18-carboxamide × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;0.1 M Tris pH 8.0,
3% Methanol,
35% PEG6000
|
Resolution 1.94 Å
R-free 0.244
|
|
6UDT
X-ray co-crystal structure of compound 10 bound to human Mcl-1
Deposited 2019-09-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
171–327(157 aa)
|
Not recorded
|
Q4V (4S,7aR,9aR,10S,11E,18R)-6'-chloro-10,18-dihydroxy-15-methyl-16-oxo-3',4',7,7a,8,9,9a,10,13,14,15,16,17,18-tetradecahydro-2'H,3H,5H-spiro[1,19-(ethanediylidene)cyclobuta[n][1,4]oxazepino[4,3-a][1,8]diazacyclohexadecine-4,1'-naphthalene]-18-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;0.1 M Tris pH 8.0,
3% Ethanol,
36% PEG6000
|
Resolution 1.50 Å
R-free 0.221
|
|
6UDT
X-ray co-crystal structure of compound 10 bound to human Mcl-1
Deposited 2019-09-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
171–327(157 aa)
|
Not recorded
|
Q4V (4S,7aR,9aR,10S,11E,18R)-6'-chloro-10,18-dihydroxy-15-methyl-16-oxo-3',4',7,7a,8,9,9a,10,13,14,15,16,17,18-tetradecahydro-2'H,3H,5H-spiro[1,19-(ethanediylidene)cyclobuta[n][1,4]oxazepino[4,3-a][1,8]diazacyclohexadecine-4,1'-naphthalene]-18-carboxylic acid × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;0.1 M Tris pH 8.0,
3% Ethanol,
36% PEG6000
|
Resolution 1.50 Å
R-free 0.221
|
|
6UDU
X-ray co-crystal structure of compound 8 bound to human Mcl-1
Deposited 2019-09-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
171–327(157 aa)
|
Not recorded
|
Q4Y (4S,11E,17R)-6'-chloro-17-hydroxy-14-methyl-15-oxo-3',4',8,9,10,13,14,15,16,17-decahydro-2'H,3H,5H,7H-spiro[1,18-(ethanediylidene)[1,4]oxazepino[4,3-a][1,8]diazacyclopentadecine-4,1'-naphthalene]-17-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;0.1 M Tris pH 8.0,
3% Ethanol,
36% PEG6000
|
Resolution 1.75 Å
R-free 0.229
|
|
6UDU
X-ray co-crystal structure of compound 8 bound to human Mcl-1
Deposited 2019-09-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
171–327(157 aa)
|
Not recorded
|
Q4Y (4S,11E,17R)-6'-chloro-17-hydroxy-14-methyl-15-oxo-3',4',8,9,10,13,14,15,16,17-decahydro-2'H,3H,5H,7H-spiro[1,18-(ethanediylidene)[1,4]oxazepino[4,3-a][1,8]diazacyclopentadecine-4,1'-naphthalene]-17-carboxylic acid × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;0.1 M Tris pH 8.0,
3% Ethanol,
36% PEG6000
|
Resolution 1.75 Å
R-free 0.229
|
|
6UDV
X-ray co-crystal structure of compound 3 bound to human Mcl-1
Deposited 2019-09-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
171–327(157 aa)
|
Not recorded
|
Q51 (4S,7aR,9aR,10S,11E,14S,15R)-6'-chloro-10-hydroxy-14,15-dimethyl-3',4',7a,8,9,9a,10,13,14,15-decahydro-2'H,3H,5H-spiro[1,19-(ethanediylidene)-16lambda~6~-cyclobuta[i][1,4]oxazepino[3,4-f][1,2,7]thiadiazacyclohexadecine-4,1'-naphthalene]-16,16,18(7H,17H)-trione × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;0.1 M Tris pH 8.0,
3% eEthanol,
36% PEG6000
|
Resolution 1.35 Å
R-free 0.240
|
|
6UDV
X-ray co-crystal structure of compound 3 bound to human Mcl-1
Deposited 2019-09-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
171–327(157 aa)
|
Not recorded
|
Q51 (4S,7aR,9aR,10S,11E,14S,15R)-6'-chloro-10-hydroxy-14,15-dimethyl-3',4',7a,8,9,9a,10,13,14,15-decahydro-2'H,3H,5H-spiro[1,19-(ethanediylidene)-16lambda~6~-cyclobuta[i][1,4]oxazepino[3,4-f][1,2,7]thiadiazacyclohexadecine-4,1'-naphthalene]-16,16,18(7H,17H)-trione × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;0.1 M Tris pH 8.0,
3% eEthanol,
36% PEG6000
|
Resolution 1.35 Å
R-free 0.240
|
|
6UDX
X-ray co-crystal structure of compound 7 with Mcl-1
Deposited 2019-09-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
171–327(157 aa)
|
Not recorded
|
Q57 (2R)-[(3S)-6'-chloro-5-(cyclobutylmethyl)-3',4,4',5-tetrahydro-2H,2'H-spiro[1,5-benzoxazepine-3,1'-naphthalen]-7-yl](hydroxy)acetic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;0.1 M Tris pH 8.0,
3% Ethanol,
36% PEG6000
|
Resolution 1.70 Å
R-free 0.234
|
|
6UDX
X-ray co-crystal structure of compound 7 with Mcl-1
Deposited 2019-09-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
171–327(157 aa)
|
Not recorded
|
Q57 (2R)-[(3S)-6'-chloro-5-(cyclobutylmethyl)-3',4,4',5-tetrahydro-2H,2'H-spiro[1,5-benzoxazepine-3,1'-naphthalen]-7-yl](hydroxy)acetic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;0.1 M Tris pH 8.0,
3% Ethanol,
36% PEG6000
|
Resolution 1.70 Å
R-free 0.234
|
|
6UDY
X-ray co-crystal structure of compound 5 with Mcl-1
Deposited 2019-09-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
171–327(157 aa)
|
Not recorded
|
Q54 (3S)-6'-chloro-5-(cyclobutylmethyl)-3',4,4',5-tetrahydro-2H,2'H-spiro[1,5-benzoxazepine-3,1'-naphthalene]-7-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;0.1 M Tris pH 8.0,
3% Ethanol,
36% PEG6000
|
Resolution 1.70 Å
R-free 0.285
|
|
6UDY
X-ray co-crystal structure of compound 5 with Mcl-1
Deposited 2019-09-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
171–327(157 aa)
|
Not recorded
|
Q54 (3S)-6'-chloro-5-(cyclobutylmethyl)-3',4,4',5-tetrahydro-2H,2'H-spiro[1,5-benzoxazepine-3,1'-naphthalene]-7-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;0.1 M Tris pH 8.0,
3% Ethanol,
36% PEG6000
|
Resolution 1.70 Å
R-free 0.285
|
|
6VBX
Crystal structure of Mcl-1 in complex with 138E12 peptide, Lys-covalent antagonist
Deposited 2019-12-19
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
172–323(152 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;298 K;0.5M Potassium Thiocyanate, 0.1M Sodium Acetate:HCL pH4.6
|
Resolution 1.95 Å
R-free 0.278
|
|
6VBX
Crystal structure of Mcl-1 in complex with 138E12 peptide, Lys-covalent antagonist
Deposited 2019-12-19
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain A
172–323(152 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;298 K;0.5M Potassium Thiocyanate, 0.1M Sodium Acetate:HCL pH4.6
|
Resolution 1.95 Å
R-free 0.278
|
|
6YBG
Structure of Mcl-1 in complex with compound 2g
Deposited 2020-03-17
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
171–327(157 aa)
|
Not recorded
|
OJT (2~{R})-2-[5-[3-chloranyl-2-methyl-4-[2-(4-methylpiperazin-1-yl)ethoxy]phenyl]-6-(3-chlorophenyl)thieno[2,3-d]pyrimidin-4-yl]oxy-3-(2-methoxyphenyl)propanoic acid × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;284 K;0.1 M Hepes buffer pH 7.5, 0.2 M Ammonium Acetate, 30% PegMME550
|
Resolution 2.10 Å
R-free 0.235
|
|
6YBG
Structure of Mcl-1 in complex with compound 2g
Deposited 2020-03-17
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
171–327(157 aa)
|
Not recorded
|
OJT (2~{R})-2-[5-[3-chloranyl-2-methyl-4-[2-(4-methylpiperazin-1-yl)ethoxy]phenyl]-6-(3-chlorophenyl)thieno[2,3-d]pyrimidin-4-yl]oxy-3-(2-methoxyphenyl)propanoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;284 K;0.1 M Hepes buffer pH 7.5, 0.2 M Ammonium Acetate, 30% PegMME550
|
Resolution 2.10 Å
R-free 0.235
|
|
6YBJ
Structure of MBP-Mcl-1 in complex with compound 3e
Deposited 2020-03-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–321(149 aa)
|
Mutation:K194A,K197A,R201A
|
CL CHLORIDE ION × 1
OJW (2~{R})-2-[5-[3-chloranyl-2-methyl-4-[2-(4-methylpiperazin-1-yl)ethoxy]phenyl]-6-(5-fluoranylfuran-2-yl)thieno[2,3-d]pyrimidin-4-yl]oxy-3-[2-[(2-methylpyrazol-3-yl)methoxy]phenyl]propanoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;0.1M BisTris buffer pH 6.5, 20% PegMME5K
|
Resolution 2.50 Å
R-free 0.237
|
|
6YBK
Structure of MBP-Mcl-1 in complex with compound 4d
Deposited 2020-03-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–321(149 aa)
|
Mutation:K194A,K197A,R201A
|
CL CHLORIDE ION × 1
OK2 (2~{R})-2-[5-[3-chloranyl-2-methyl-4-[2-(4-methylpiperazin-1-yl)ethoxy]phenyl]-6-(4-fluorophenyl)thieno[2,3-d]pyrimidin-4-yl]oxy-3-[2-(pyrazin-2-ylmethoxy)phenyl]propanoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;292 K;0.1M BisTris buffer pH 6.5, 20% PegMME5K
|
Resolution 2.00 Å
R-free 0.235
|
|
6YBL
Structure of MBP-Mcl-1 in complex with compound 9m
Deposited 2020-03-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–321(149 aa)
|
Mutation:K194A,K197A,R201A
|
OK5 (2~{R})-2-[5-[3-chloranyl-2-methyl-4-[2-(4-methylpiperazin-1-yl)ethoxy]phenyl]-6-(4-fluorophenyl)thieno[2,3-d]pyrimidin-4-yl]oxy-3-[2-[[2-(2-methoxyphenyl)pyrimidin-4-yl]methoxy]phenyl]propanoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;0.1M BisTris buffer pH 6.5, 20% PegMME5K
|
Resolution 2.10 Å
R-free 0.228
|
|
6ZIE
Crystal structure of MCL-1 in complex with a neutralizing Alphabody CMPX-383B
Deposited 2020-06-25
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
172–327(156 aa)
|
Not recorded
|
ZN ZINC ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 5.5;287 K;2% (w/v) PEG 3000
0.1 M sodium acetate pH 5.5
0.2 M zinc acetate dihydrate
|
Resolution 2.30 Å
R-free 0.259
|
|
7NB4
Structure of Mcl-1 complex with compound 1
Deposited 2021-01-25
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
171–327(157 aa)
|
Not recorded
|
U6Q (2~{R})-2-[[5-(3-chloranyl-2-methyl-phenyl)-6-ethyl-thieno[2,3-d]pyrimidin-4-yl]amino]-3-phenyl-propanoic acid × 1
MG MAGNESIUM ION × 1
PG6 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;284 K;1.8 M Ammonium citrate
|
Resolution 1.90 Å
R-free 0.253
|
|
7NB7
Structure of Mcl-1 complex with compound 6b
Deposited 2021-01-25
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
171–327(157 aa)
|
Not recorded
|
U6N (2~{R})-2-[[7-but-2-ynyl-5-(3-chloranyl-2-methyl-phenyl)-6-ethyl-pyrrolo[2,3-d]pyrimidin-4-yl]amino]-3-phenyl-propanoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;284 K;1.8 M Ammonium citrate
|
Resolution 2.82 Å
R-free 0.291
|
|
7NB7
Structure of Mcl-1 complex with compound 6b
Deposited 2021-01-25
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
171–327(157 aa)
|
Not recorded
|
U6N (2~{R})-2-[[7-but-2-ynyl-5-(3-chloranyl-2-methyl-phenyl)-6-ethyl-pyrrolo[2,3-d]pyrimidin-4-yl]amino]-3-phenyl-propanoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;284 K;1.8 M Ammonium citrate
|
Resolution 2.82 Å
R-free 0.291
|
|
7NB7
Structure of Mcl-1 complex with compound 6b
Deposited 2021-01-25
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
171–327(157 aa)
|
Not recorded
|
U6N (2~{R})-2-[[7-but-2-ynyl-5-(3-chloranyl-2-methyl-phenyl)-6-ethyl-pyrrolo[2,3-d]pyrimidin-4-yl]amino]-3-phenyl-propanoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;284 K;1.8 M Ammonium citrate
|
Resolution 2.82 Å
R-free 0.291
|
|
7NB7
Structure of Mcl-1 complex with compound 6b
Deposited 2021-01-25
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
171–327(157 aa)
|
Not recorded
|
U6N (2~{R})-2-[[7-but-2-ynyl-5-(3-chloranyl-2-methyl-phenyl)-6-ethyl-pyrrolo[2,3-d]pyrimidin-4-yl]amino]-3-phenyl-propanoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;284 K;1.8 M Ammonium citrate
|
Resolution 2.82 Å
R-free 0.291
|
|
7XGE
Crystal structure of MCL-1 in complex with computationally designed inhibitor protein
Deposited 2022-04-04
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
172–321(150 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;12% PEG 6,000 (w/v), 0.1M Magnesium chloride, 0.1M ADA (pH 6.5)
|
Resolution 2.38 Å
R-free 0.240
|
|
7XGE
Crystal structure of MCL-1 in complex with computationally designed inhibitor protein
Deposited 2022-04-04
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain D
172–321(150 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;12% PEG 6,000 (w/v), 0.1M Magnesium chloride, 0.1M ADA (pH 6.5)
|
Resolution 2.38 Å
R-free 0.240
|
|
7XGE
Crystal structure of MCL-1 in complex with computationally designed inhibitor protein
Deposited 2022-04-04
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain F
172–321(150 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;12% PEG 6,000 (w/v), 0.1M Magnesium chloride, 0.1M ADA (pH 6.5)
|
Resolution 2.38 Å
R-free 0.240
|
|
7XGE
Crystal structure of MCL-1 in complex with computationally designed inhibitor protein
Deposited 2022-04-04
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain H
172–321(150 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;12% PEG 6,000 (w/v), 0.1M Magnesium chloride, 0.1M ADA (pH 6.5)
|
Resolution 2.38 Å
R-free 0.240
|
|
8AV9
INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION PROTEIN FABCOMPLEX IN COMPLEX WITH COMPOUND 1
Deposited 2022-08-26
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
174–327(154 aa)
|
Not recorded
|
VF8 (3R,6R,7S,8E,11S,12R,22S)-6'-chloro-7-methoxy-11,12-dimethyl-13,13-dioxo-spiro[20-oxa-13-gamma6-thia-1,14-diazatetracyclo[14.7.2.03,6.019,24]pentacosa-8,16(25),17,19(24)-tetraene-22,1'-tetralin]-15-one × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;310 K;15% Peg2kMME, PCTP 0.1M pH 6.5
|
Resolution 1.99 Å
R-free 0.272
|
|
8EKX
Structure of MBP-Mcl-1 in complex with MIK665
Deposited 2022-09-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–321(149 aa)
|
Mutation:K194A,K197A,R201A
|
OK5 (2~{R})-2-[5-[3-chloranyl-2-methyl-4-[2-(4-methylpiperazin-1-yl)ethoxy]phenyl]-6-(4-fluorophenyl)thieno[2,3-d]pyrimidin-4-yl]oxy-3-[2-[[2-(2-methoxyphenyl)pyrimidin-4-yl]methoxy]phenyl]propanoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;290 K;30% (w/v) PEG 3350, 0.1 M magnesium formate
|
Resolution 1.55 Å
R-free 0.214
|
|
8EL0
Structure of MBP-Mcl-1 in complex with a macrocyclic compound
Deposited 2022-09-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–321(149 aa)
|
Mutation:K194A,K197A,R201A
|
WLW (7R,20P)-18-chloro-1-(4-fluorophenyl)-10-{[(2M)-2-(2-methoxyphenyl)pyrimidin-4-yl]methoxy}-19-methyl-15-[2-(4-methylpiperazin-1-yl)ethyl]-7,8,15,16-tetrahydro-14H-17,20-etheno-9,13-(metheno)-6-oxa-2-thia-3,5,15-triazacyclooctadeca[1,2,3-cd]indene-7-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;290 K;26% (w/v) PEG 3350, 0.05 M magnesium formate
|
Resolution 1.92 Å
R-free 0.224
|
|
8EL1
Structure of MBP-Mcl-1 in complex with ABBV-467
Deposited 2022-09-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–321(149 aa)
|
Mutation:K194A,K197A,R201A
|
WME (7R,16R)-19,23-dichloro-10-{[2-(4-{[(2R)-1,4-dioxan-2-yl]methoxy}phenyl)pyrimidin-4-yl]methoxy}-1-(4-fluorophenyl)-20,22-dimethyl-16-[(4-methylpiperazin-1-yl)methyl]-7,8,15,16-tetrahydro-18,21-etheno-13,9-(metheno)-6,14,17-trioxa-2-thia-3,5-diazacyclononadeca[1,2,3-cd]indene-7-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6;290 K;25% (w/v) PEG 1500, 0.1 M MIB pH 6.0
(MIB is sodium malonate dibasic monohydrate, imidazole, boric acid)
|
Resolution 2.41 Å
R-free 0.291
|
|
8EL1
Structure of MBP-Mcl-1 in complex with ABBV-467
Deposited 2022-09-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
173–321(149 aa)
|
Mutation:K194A,K197A,R201A
|
WME (7R,16R)-19,23-dichloro-10-{[2-(4-{[(2R)-1,4-dioxan-2-yl]methoxy}phenyl)pyrimidin-4-yl]methoxy}-1-(4-fluorophenyl)-20,22-dimethyl-16-[(4-methylpiperazin-1-yl)methyl]-7,8,15,16-tetrahydro-18,21-etheno-13,9-(metheno)-6,14,17-trioxa-2-thia-3,5-diazacyclononadeca[1,2,3-cd]indene-7-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6;290 K;25% (w/v) PEG 1500, 0.1 M MIB pH 6.0
(MIB is sodium malonate dibasic monohydrate, imidazole, boric acid)
|
Resolution 2.41 Å
R-free 0.291
|
|
8EL1
Structure of MBP-Mcl-1 in complex with ABBV-467
Deposited 2022-09-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
173–321(149 aa)
|
Mutation:K194A,K197A,R201A
|
WME (7R,16R)-19,23-dichloro-10-{[2-(4-{[(2R)-1,4-dioxan-2-yl]methoxy}phenyl)pyrimidin-4-yl]methoxy}-1-(4-fluorophenyl)-20,22-dimethyl-16-[(4-methylpiperazin-1-yl)methyl]-7,8,15,16-tetrahydro-18,21-etheno-13,9-(metheno)-6,14,17-trioxa-2-thia-3,5-diazacyclononadeca[1,2,3-cd]indene-7-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6;290 K;25% (w/v) PEG 1500, 0.1 M MIB pH 6.0
(MIB is sodium malonate dibasic monohydrate, imidazole, boric acid)
|
Resolution 2.41 Å
R-free 0.291
|
|
8EL1
Structure of MBP-Mcl-1 in complex with ABBV-467
Deposited 2022-09-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
173–321(149 aa)
|
Mutation:K194A,K197A,R201A
|
WME (7R,16R)-19,23-dichloro-10-{[2-(4-{[(2R)-1,4-dioxan-2-yl]methoxy}phenyl)pyrimidin-4-yl]methoxy}-1-(4-fluorophenyl)-20,22-dimethyl-16-[(4-methylpiperazin-1-yl)methyl]-7,8,15,16-tetrahydro-18,21-etheno-13,9-(metheno)-6,14,17-trioxa-2-thia-3,5-diazacyclononadeca[1,2,3-cd]indene-7-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6;290 K;25% (w/v) PEG 1500, 0.1 M MIB pH 6.0
(MIB is sodium malonate dibasic monohydrate, imidazole, boric acid)
|
Resolution 2.41 Å
R-free 0.291
|
|
8G3S
MBP-Mcl1 in complex with ligand 11
Deposited 2023-02-08
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–321(149 aa)
|
Not recorded
|
FMT FORMIC ACID × 2
YLT (1'S,3aS,5R,16R,17S,19E,21S,21aR)-6'-chloro-21-methoxy-16,17-dimethyl-2,3,3',3a,4',16,17,18,21,21a-decahydro-2'H,6H,8H-15lambda~6~-spiro[10,12-etheno-15lambda~6~-furo[3,2-i][1,4]oxazepino[3,4-f][1,2,7]thiadiazacyclohexadecine-7,1'-naphthalene]-13,15,15(4H,14H)-trione × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;285 K;0.17 M Mg Formate, 25.00% (w/v) PEG3350
|
Resolution 1.40 Å
R-free 0.194
|
|
8G3T
MBP-Mcl1 in complex with ligand 12
Deposited 2023-02-08
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–321(149 aa)
|
Not recorded
|
FMT FORMIC ACID × 1
EDO 1,2-ETHANEDIOL × 1
YLK (1'S,3aS,5R,16R,17S,19Z,21R,21aR)-6'-chloro-20-fluoro-21-methoxy-16,17-dimethyl-2,3,3',3a,4',16,17,18,21,21a-decahydro-2'H,6H,8H-15lambda~6~-spiro[10,12-etheno-15lambda~6~-furo[3,2-i][1,4]oxazepino[3,4-f][1,2,7]thiadiazacyclohexadecine-7,1'-naphthalene]-13,15,15(4H,14H)-trione × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;285 K;0.17M Mg Formate, 23.5% (w/v) PEG3350
|
Resolution 1.83 Å
R-free 0.233
|
|
8G3U
MBP-Mcl1 in complex with ligand 21
Deposited 2023-02-08
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–321(149 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 2
YKT (1'S,3aS,5R,16R,17S,19Z,21R,21aR)-6'-chloro-20-fluoro-21-{[(5S,9aS)-hexahydropyrazino[2,1-c][1,4]oxazin-8(1H)-yl]methyl}-21-methoxy-16,17-dimethyl-2,3,3',3a,4',16,17,18,21,21a-decahydro-2'H,6H,8H-15lambda~6~-spiro[10,12-(ethanediylidene)-15lambda~6~-furo[3,2-i][1,4]oxazepino[3,4-f][1,2,7]thiadiazacyclohexadecine-7,1'-naphthalene]-13,15,15(4H,14H)-trione × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;285 K;0.11 M Mg Formate, 19.0% (w/v) PEG3350
|
Resolution 1.94 Å
R-free 0.238
|
|
8G3W
MBP-Mcl1 in complex with ligand 28
Deposited 2023-02-08
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–321(149 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 3
PEG DI(HYDROXYETHYL)ETHER × 1
YKX N-[(1'S,3aS,5R,15S,17S,19Z,21R,21aR)-6'-chloro-20-fluoro-21-methoxy-17-methyl-13,15-dioxo-2,3,3',3a,4,4',13,16,17,18,21,21a-dodecahydro-2'H,6H,8H-15lambda~6~-spiro[10,12-(ethanediylidene)-15lambda~6~-furo[3,2-i][1,4]oxazepino[3,4-f][1,2,7]thiadiazacyclohexadecine-7,1'-naphthalen]-15-yl]-3-methoxy-1-methyl-1H-pyrazole-4-carboxamide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;285 K;19% (w/v) PEG3350, 0.05 M Mg Formate
|
Resolution 1.78 Å
R-free 0.226
|
|
8G3X
MBP-Mcl1 in complex with ligand 32
Deposited 2023-02-08
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–321(149 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 10
YLF N-[(1'S,3aS,5R,15S,17S,19Z,21R,21aR)-6'-chloro-20-fluoro-21-{[(5S,9aS)-hexahydropyrazino[2,1-c][1,4]oxazin-8(1H)-yl]methyl}-21-methoxy-17-methyl-13,15-dioxo-2,3,3',3a,4,4',13,16,17,18,21,21a-dodecahydro-2'H,6H,8H-15lambda~6~-spiro[10,12-(ethanediylidene)-15lambda~6~-furo[3,2-i][1,4]oxazepino[3,4-f][1,2,7]thiadiazacyclohexadecine-7,1'-naphthalen]-15-yl]-3-methoxy-1-methyl-1H-pyrazole-4-carboxamide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;285 K;20.5% (w/v) PEG3350, 0.11M Mg formate
|
Resolution 1.46 Å
R-free 0.206
|
|
8G3Y
MBP-Mcl1 in complex with ligand 34
Deposited 2023-02-08
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–321(149 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
EDO 1,2-ETHANEDIOL × 3
PEG DI(HYDROXYETHYL)ETHER × 1
YKL N-[(1'S,3aS,5R,15S,17S,19Z,21S,21aR)-6'-chloro-20-fluoro-21-{[(5S,9aS)-hexahydropyrazino[2,1-c][1,4]oxazin-8(1H)-yl]methyl}-21-methoxy-17-methyl-13,15-dioxo-2,3,3',3a,4,4',13,16,17,18,21,21a-dodecahydro-2'H,6H,8H-15lambda~6~-spiro[10,12-(ethanediylidene)-15lambda~6~-furo[3,2-i][1,4]oxazepino[3,4-f][1,2,7]thiadiazacyclohexadecine-7,1'-naphthalen]-15-yl]-3-methoxy-1-methyl-1H-pyrazole-4-carboxamide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;285 K;25% (w/v) PEG3350, 0.11M Mg formate
|
Resolution 1.70 Å
R-free 0.216
|
|
8H7B
The crystal structure of human mcl1 kinase domain in complex with MCL1-M-EBA
Deposited 2022-10-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
172–322(151 aa)
|
Not recorded
|
QHR 7-[3-(isoquinolin-7-yloxymethyl)-1,5-dimethyl-pyrazol-4-yl]-3-(3-naphthalen-1-yloxypropyl)-1H-indole-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;18% (v/v) 2-Propanol, 0.1 M sodium citrate, pH 5.5 and 20% (w/v) PEG 4000
|
Resolution 1.46 Å
R-free 0.197
|
|
8H7B
The crystal structure of human mcl1 kinase domain in complex with MCL1-M-EBA
Deposited 2022-10-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
172–322(151 aa)
|
Not recorded
|
QHR 7-[3-(isoquinolin-7-yloxymethyl)-1,5-dimethyl-pyrazol-4-yl]-3-(3-naphthalen-1-yloxypropyl)-1H-indole-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;18% (v/v) 2-Propanol, 0.1 M sodium citrate, pH 5.5 and 20% (w/v) PEG 4000
|
Resolution 1.46 Å
R-free 0.197
|
|
8IQM
Structural basis of the specificity and interaction mechanism of Bmf binding to pro-survival proteins
Deposited 2023-03-16
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
171–327(157 aa)
Fragment:UNP residues 171-327
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291 K;0.1 M potassium thiocyanate, 20% polyethylene glycol monomethyl ether 2,000.
|
Resolution 1.97 Å
R-free 0.235
|
|
8QSO
Crystal structure of human Mcl-1 in complex with compound 1
Deposited 2023-10-10
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–321(149 aa)
|
Not recorded
|
WXW (13S,16R,19S)-16-benzyl-43-ethoxy-N-methyl-7,11,14,17-tetraoxo-13-phenyl-5-oxa-2,8,12,15,18-pentaaza-1(1,4),4(1,2)-dibenzena-9(1,4)-cyclohexanacycloicosaphane-19-carboxamide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;293 K;1.94 M Ammonium Citrate pH 7.0
|
Resolution 2.11 Å
R-free 0.250
|
|
8SVY
MBP-Mcl1 in complex with ligand 10
Deposited 2023-05-17
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–321(149 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 4
GOL GLYCEROL × 1
WUC (15P)-17-chloro-33-fluoro-12-[(2-methoxyethoxy)methyl]-5,14,22-trimethyl-28-oxa-9-thia-5,6,13,14,22-pentaazaheptacyclo[27.7.1.1~4,7~.0~11,15~.0~16,21~.0~20,24~.0~30,35~]octatriaconta-1(36),4(38),6,11(15),12,16,18,20,23,29(37),30,32,34-tridecaene-23-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;285 K;19% (w/v) PEG3350, 0.17M Mg formate
|
Resolution 1.47 Å
R-free 0.206
|
|
8T6F
Crystal structure of human MBP-Myeloid cell leukemia 1 (Mcl-1) in complex with BRD810 inhibitor
Deposited 2023-06-15
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
174–321(148 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
YI7 (3aM,9S,15R)-4-chloro-3-ethyl-7-{3-[(6-fluoronaphthalen-1-yl)oxy]propyl}-2-methyl-15-[2-(morpholin-4-yl)ethyl]-2,10,11,12,13,15-hexahydropyrazolo[4',3':9,10][1,6]oxazacycloundecino[8,7,6-hi]indole-8-carboxylic acid × 1
DMS DIMETHYL SULFOXIDE × 1
PGE TRIETHYLENE GLYCOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;3.75 mg/mL MBP-MCL1, 17.5 mM HEPES pH 7.5, 8% PEG 3350, 5% MPD, 5% DMSO, 2.5% PEG400, 75mM NaCl, 25mM Magnesium Formate, 0.75mM DTT, 0.75 mM Maltose, 0.5mM ANJ810, 0.375% glycerol, ~10-4 diluted microseeds, equilibrated against 1.5M NaCl in a EasyXtal 15-Well DropGuard Crystallization Tool
|
Resolution 1.56 Å
R-free 0.218
|
|
8VJP
Histidine-covalent stapled alpha-helical peptide (155H1) targeting hMcl-1
Deposited 2024-01-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
172–323(152 aa)
|
Not recorded
|
A1AJE (S~1~R)-3-carbamoyl-4-methoxybenzene-1-sulfinic acid × 1
A1AJD (4Z)-oct-4-en-1-ol × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;291 K;0.1 M Imidazole, pH 8.0 and 10% (w/v) PEG 8,000
|
Resolution 1.13 Å
R-free 0.221
|
|
8X62
crystal structure of human Mcl-1 kinase domain in complex with RM1
Deposited 2023-11-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
172–321(150 aa)
Chain B
172–321(150 aa)
|
Not recorded
|
YO0 1-[7-[1,5-dimethyl-3-(phenoxymethyl)pyrazol-4-yl]-3-(3-naphthalen-1-yloxypropyl)-1~{H}-indol-2-yl]-2,2-bis(oxidanyl)ethanone × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6;293 K;0.1M Sodium citrate tribasic dihydrate (pH 5.5-6.5), 18% (v/v) 2-propanol and 13~20% (w/v) PEG 4000.
|
Resolution 2.80 Å
R-free 0.288
|
|
8Y1Y
Crystal structure of the Mcl-1 in complex with a long BH3 peptide of BAK
Deposited 2024-01-25
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
171–327(157 aa)
Fragment:UNP residues 171-327
|
Not recorded
|
ZN ZINC ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291 K;0.01M Nickel (II) Chloride, 0.1M Tris-HCl pH 8.5, 20% polyethylene glycol monomethyl ether 2000
|
Resolution 2.01 Å
R-free 0.252
|
|
8Y1Z
Crystal structure of the Mcl-1 in complex with a Short BH3 peptide of BAK
Deposited 2024-01-25
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
171–327(157 aa)
Fragment:UNP residues 171-327
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291 K;0.2M Lithium Acetate, 18-25% polyethylene glycol 3350
|
Resolution 1.91 Å
R-free 0.235
|
|
8Y20
Crystal structure of the Mcl-1 in complex with A-1210477
Deposited 2024-01-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–321(149 aa)
|
Mutation:E173A,N174A,K240A,K391A,K394A,R398A
|
A1LXV A-1210477 × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;25% PEG 3350, 0.2M Magnesium Formate, 1mM Maltose
|
Resolution 2.23 Å
R-free 0.243
|
|
8ZCS
Crystal structure of the MBP-MCL1 complex with highly selective and potent Cyclic peptide inhibitor
Deposited 2024-04-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
173–321(149 aa)
Chain B
173–321(149 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;290 K;0.2 M MgCl2, 0.1 Tris pH 8.5, 25% w/v Polyethylene glycol 3,350
|
Resolution 2.79 Å
R-free 0.296
|
|
9BCG
Myeloid cell leukemia-1 (Mcl-1) complexed with compound
Deposited 2024-04-09
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–320(148 aa)
|
Not recorded
|
A1ALT 7-[(4R,5S,6P)-7-chloro-10-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-4-methyl-1-oxo-6-(1,3,5-trimethyl-1H-pyrazol-4-yl)-3,4-dihydropyrazino[1,2-a]indol-2(1H)-yl]-4,5-dimethoxy-1-methyl-1H-indole-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;292 K;PEG 3350, Bis-Tris, Magnesium chloride
|
Resolution 1.90 Å
R-free 0.210
|
|
9CDT
Crystal Structure of MCL-1-Peptide Complex
Deposited 2024-06-25
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
172–322(151 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;0.2 M Sodium chloride, 0.1 M Bis-Tris pH 6.5, and 25% w/v Polyethylene glycol 3,350
|
Resolution 2.10 Å
R-free 0.272
|
|
9EFJ
Irreversible Mcl-1/HIT2 Complex
Deposited 2024-11-20
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
172–323(152 aa)
|
Not recorded
|
A1BI3 (1R)-N-{5-[(dihydroxy-lambda~4~-sulfanyl)oxy]pyridin-3-yl}-2,3-dihydro-1H-indene-1-carboxamide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;0.15 M Potassium Bromide and 30 % (w/v) PEG 2000 MME
|
Resolution 1.82 Å
R-free 0.295
|
|
9PQ5
MBP-Mcl1 in complex with ligand 8
Deposited 2025-07-22
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–321(149 aa)
|
Not recorded
|
A1CMI 17-chloranyl-5,13,14,22-tetramethyl-28-oxa-2,9-dithia-5,6,12,13,24-pentazaheptacyclo[27.7.1.1^{4,7}.0^{11,15}.0^{16,21}.0^{20,24}.0^{30,35}]octatriaconta-1(36),4(38),6,11,14,16,18,20,22,29(37),30(35),31,33-tridecaene-23-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;285 K;19% (w/v) PEG3350, 0.17M Magnesium formate
|
Resolution 1.28 Å
R-free 0.195
|
|
9PQ6
MBP-Mcl1 in complex with ligand 12
Deposited 2025-07-22
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–321(149 aa)
|
Not recorded
|
A1CMH 17-chloranyl-33-fluoranyl-5,13,14,22-tetramethyl-28-oxa-9-thia-5,6,12,13,24-pentazaheptacyclo[27.7.1.1^{4,7}.0^{11,15}.0^{16,21}.0^{20,24}.0^{30,35}]octatriaconta-1(36),4(38),6,11,14,16,18,20,22,29(37),30(35),31,33-tridecaene-23-carboxylic acid × 1
EDO 1,2-ETHANEDIOL × 4
FMT FORMIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;285 K;19% (w/v) PEG3350, 0.17M Magnesium formate
|
Resolution 1.53 Å
R-free 0.211
|
|
9PQ7
MBP-Mcl1 in complex with ligand 21b
Deposited 2025-07-22
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–321(149 aa)
|
Not recorded
|
A1CMG 17-chloranyl-33-fluoranyl-12-[2-(2-methoxyethoxy)ethyl]-5,14,22-trimethyl-28-oxa-9-thia-5,6,12,13,24-pentazaheptacyclo[27.7.1.1^{4,7}.0^{11,15}.0^{16,21}.0^{20,24}.0^{30,35}]octatriaconta-1(36),4(38),6,11(15),13,16,18,20,22,29(37),30(35),31,33-tridecaene-23-carboxylic acid × 1
EDO 1,2-ETHANEDIOL × 1
FMT FORMIC ACID × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;285 K;19% (w/v) PEG3350, 0.17M Magnesium formate
|
Resolution 1.24 Å
R-free 0.171
|
|
9PW6
Myeloid cell leukemia-1 (Mcl-1) complexed with compound 8
Deposited 2025-08-04
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
170–321(152 aa)
|
Not recorded
|
A1CL3 7-[(4R,5S,6P)-7-chloro-10-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-4-methyl-1-oxo-6-(1,3,5-trimethyl-1H-pyrazol-4-yl)-3,4-dihydropyrazino[1,2-a]indol-2(1H)-yl]-1-(2-methoxyethyl)-5-methyl-1H-indole-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;291 K;25-30% PEG 3350, 0.1 M Bis-TRIS pH 6.5, 0.2 M MgCl2
|
Resolution 2.07 Å
R-free 0.258
|
|
9PW6
Myeloid cell leukemia-1 (Mcl-1) complexed with compound 8
Deposited 2025-08-04
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
170–321(152 aa)
|
Not recorded
|
A1CL3 7-[(4R,5S,6P)-7-chloro-10-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-4-methyl-1-oxo-6-(1,3,5-trimethyl-1H-pyrazol-4-yl)-3,4-dihydropyrazino[1,2-a]indol-2(1H)-yl]-1-(2-methoxyethyl)-5-methyl-1H-indole-2-carboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;291 K;25-30% PEG 3350, 0.1 M Bis-TRIS pH 6.5, 0.2 M MgCl2
|
Resolution 2.07 Å
R-free 0.258
|
|
9PW7
Myeloid cell leukemia-1 (Mcl-1) complexed with compound 13
Deposited 2025-08-04
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
173–320(148 aa)
|
Not recorded
|
A1CL6 (2S,4R,5S,12P,23R)-11-chloro-7-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-27,28-dimethoxy-4,15-dimethyl-32-oxo-19-oxa-2,5,15,16,23-pentaazaheptacyclo[21.6.1.1~2,6~.1~5,8~.0~12,31~.0~13,17~.0~26,30~]dotriaconta-1(30),6,8(31),9,11,13,16,24,26,28-decaene-24-carboxylic acid (non-preferred name) × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;291 K;25-30% PEG3350, 0.1 M Bis-TRIS pH 6.5, 0.2 M MgCl2
|
Resolution 1.95 Å
R-free 0.223
|
|
9UGP
Crystal structure of MCL-1 in complex with HRK BH3
Deposited 2025-04-13
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
171–322(152 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291.15 K;0.1 M BIS-TRIS pH 6.5, 25%(w/v) polyethylene glycol monomethyl ether 2000
|
Resolution 1.39 Å
R-free 0.197
|
|
9Z3V
Histidine-covalent 165G1 targeting hMcl-1
Deposited 2025-11-07
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
172–323(152 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;278 K;0.1 M Sodium Acetate: HCl, pH 4.5, 25 % (w/v) PEG 3350
|
Resolution 1.60 Å
R-free 0.259
|
|
9Z3V
Histidine-covalent 165G1 targeting hMcl-1
Deposited 2025-11-07
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
172–323(152 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;278 K;0.1 M Sodium Acetate: HCl, pH 4.5, 25 % (w/v) PEG 3350
|
Resolution 1.60 Å
R-free 0.259
|