2p3x

Crystal structure of Grenache (Vitis vinifera) Polyphenol Oxidase

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Polyphenol oxidase, chloroplast

OrganismNot specified

UniProt P43311

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein monomer Monomer Protein 1 CU-O-CU LINKAGE × 1 water × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PPO_VITVI
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–339; UniProt 104–442

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id2p3x
Deposition date deposition_date2007-03-09
Structure title titleCrystal structure of Grenache (Vitis vinifera) Polyphenol Oxidase
Keywords keywordsPolyphenol oxidase, Grenache grapes, Oxidoreductase; OXIDOREDUCTASE
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

2p3x__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

2p3x__assembly_1__model_1 | I(q)

10-2 10-1 105 106 107 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

2p3x__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)19.92 Å
Rg (electron density)18.89 Å
Total Rg19.95 Å
Atom count2716
Residues339
Excluded volume48278 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 2p3x__assembly_1__model_1 monomeric (1) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (3)

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6. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd2p3xa_
Class classa — All alpha proteins
Fold Fold folda.86 — Di-copper centre-containing domain
Superfamily Superfamily superfamilya.86.1 — Di-copper centre-containing domain
Family Family familya.86.1.2 — Catechol oxidase

CATH v4.4 (1 domains)

Domain ID domain_id2p3xA00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology1280 — di-copper center containing domain from catechol oxidase
Homologous superfamily homologous superfamily10 — Di-copper center containing domain from catechol oxidase
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7. Citations (1)