2rhb

Crystal structure of Nsp15-H234A mutant- Hexamer in asymmetric unit

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

Uridylate-specific endoribonuclease

SARS coronavirus

UniProt P59641

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白同源多聚体 同源多聚体 蛋白 6 water × 6 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 R1AB_CVHSA
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 8–353; UniProt 6430–6775 作者链 B; PDB构建体 8–353; UniProt 6430–6775 作者链 C; PDB构建体 8–353; UniProt 6430–6775 作者链 D; PDB构建体 8–353; UniProt 6430–6775 作者链 E; PDB构建体 8–353; UniProt 6430–6775 作者链 F; PDB构建体 8–353; UniProt 6430–6775

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id2rhb
沉积日期 deposition_date2007-10-08
结构标题 titleCrystal structure of Nsp15-H234A mutant- Hexamer in asymmetric unit
关键词 keywordsENDORIBONUCLEASE, SARS, HEXAMER, RNA, NSP, VIRAL PROTEIN; VIRAL PROTEIN
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

2rhb__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

2rhb__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

2rhb__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)40.65 Å
Rg(电子密度)39.98 Å
总 Rg40.40 Å
原子数16054
残基数2072
排除体积287230 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 2rhb__assembly_1__model_1 hexameric (6) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (2)

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6. 折叠分类 (SCOP + CATH) 29 domains

SCOP 2.08 (17 domains)

结构域编号 domain_idd2rhba1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.66 — S-adenosyl-L-methionine-dependent methyltransferases
超家族 Superfamily superfamilyc.66.1 — S-adenosyl-L-methionine-dependent methyltransferases
家族 Family familyc.66.1.48 — Nsp15 N-terminal domain-like
结构域编号 domain_idd2rhba2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.294 — EndoU-like
超家族 Superfamily superfamilyd.294.1 — EndoU-like
家族 Family familyd.294.1.2 — Nsp15 C-terminal domain-like
结构域编号 domain_idd2rhba3
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd2rhbb1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.66 — S-adenosyl-L-methionine-dependent methyltransferases
超家族 Superfamily superfamilyc.66.1 — S-adenosyl-L-methionine-dependent methyltransferases
家族 Family familyc.66.1.48 — Nsp15 N-terminal domain-like
结构域编号 domain_idd2rhbb2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.294 — EndoU-like
超家族 Superfamily superfamilyd.294.1 — EndoU-like
家族 Family familyd.294.1.2 — Nsp15 C-terminal domain-like
结构域编号 domain_idd2rhbb3
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd2rhbc1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.66 — S-adenosyl-L-methionine-dependent methyltransferases
超家族 Superfamily superfamilyc.66.1 — S-adenosyl-L-methionine-dependent methyltransferases
家族 Family familyc.66.1.48 — Nsp15 N-terminal domain-like
结构域编号 domain_idd2rhbc2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.294 — EndoU-like
超家族 Superfamily superfamilyd.294.1 — EndoU-like
家族 Family familyd.294.1.2 — Nsp15 C-terminal domain-like
结构域编号 domain_idd2rhbc3
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd2rhbd1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.66 — S-adenosyl-L-methionine-dependent methyltransferases
超家族 Superfamily superfamilyc.66.1 — S-adenosyl-L-methionine-dependent methyltransferases
家族 Family familyc.66.1.48 — Nsp15 N-terminal domain-like
结构域编号 domain_idd2rhbd2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.294 — EndoU-like
超家族 Superfamily superfamilyd.294.1 — EndoU-like
家族 Family familyd.294.1.2 — Nsp15 C-terminal domain-like
结构域编号 domain_idd2rhbd3
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd2rhbe1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.66 — S-adenosyl-L-methionine-dependent methyltransferases
超家族 Superfamily superfamilyc.66.1 — S-adenosyl-L-methionine-dependent methyltransferases
家族 Family familyc.66.1.48 — Nsp15 N-terminal domain-like
结构域编号 domain_idd2rhbe2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.294 — EndoU-like
超家族 Superfamily superfamilyd.294.1 — EndoU-like
家族 Family familyd.294.1.2 — Nsp15 C-terminal domain-like
结构域编号 domain_idd2rhbe3
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd2rhbf1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.66 — S-adenosyl-L-methionine-dependent methyltransferases
超家族 Superfamily superfamilyc.66.1 — S-adenosyl-L-methionine-dependent methyltransferases
家族 Family familyc.66.1.48 — Nsp15 N-terminal domain-like
结构域编号 domain_idd2rhbf2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.294 — EndoU-like
超家族 Superfamily superfamilyd.294.1 — EndoU-like
家族 Family familyd.294.1.2 — Nsp15 C-terminal domain-like

CATH v4.4 (12 domains)

结构域编号 domain_id2rhbA01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology160 — Double Stranded RNA Binding Domain
同源超家族 H-superfamily homologous superfamily820 — Nsp15 N-terminal domain-like
结构域编号 domain_id2rhbA02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily11580 — nsp15 middle domain
结构域编号 domain_id2rhbB01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology160 — Double Stranded RNA Binding Domain
同源超家族 H-superfamily homologous superfamily820 — Nsp15 N-terminal domain-like
结构域编号 domain_id2rhbB02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily11580 — nsp15 middle domain
结构域编号 domain_id2rhbC01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology160 — Double Stranded RNA Binding Domain
同源超家族 H-superfamily homologous superfamily820 — Nsp15 N-terminal domain-like
结构域编号 domain_id2rhbC02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily11580 — nsp15 middle domain
结构域编号 domain_id2rhbD01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology160 — Double Stranded RNA Binding Domain
同源超家族 H-superfamily homologous superfamily820 — Nsp15 N-terminal domain-like
结构域编号 domain_id2rhbD02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily11580 — nsp15 middle domain
结构域编号 domain_id2rhbE01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology160 — Double Stranded RNA Binding Domain
同源超家族 H-superfamily homologous superfamily820 — Nsp15 N-terminal domain-like
结构域编号 domain_id2rhbE02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily11580 — nsp15 middle domain
结构域编号 domain_id2rhbF01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology160 — Double Stranded RNA Binding Domain
同源超家族 H-superfamily homologous superfamily820 — Nsp15 N-terminal domain-like
结构域编号 domain_id2rhbF02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily11580 — nsp15 middle domain
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7. 引用文献 (1)