2wbw

Ad37 fibre head in complex with CAR D1 and sialic acid

Method: X-RAY DIFFRACTION Dmax: 65.2 Å Quality: EXCELLENT

1. Protein Identity and Related Structures Protein Identity & Related Structures

FIBER PROTEIN

HUMAN ADENOVIRUS 37

UniProt Q80S15

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 22–210 Fragment:FIBRE HEAD, RESIDUES 22-210 COXSACKIEVIRUS AND ADENOVIRUS RECEPTOR × 1 (P78310) SIA N-acetyl-alpha-neuraminic acid × 1 CA CALCIUM ION × 1 X-RAY DIFFRACTION X-ray crystallization conditions:17% POLYETHYLENE GLYCOL 6000, 0.5 M LICL, 0.1 M TRIS, PH 8 Resolution 1.55 Å R-free 0.176

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name Q80S15_9ADEN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 6–194; UniProt 22–210

COXSACKIEVIRUS AND ADENOVIRUS RECEPTOR

HOMO SAPIENS

UniProt P78310

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain B; UniProt 15–140 Fragment:D1, RESIDUES 15-140 FIBER PROTEIN × 1 (Q80S15) SIA N-acetyl-alpha-neuraminic acid × 1 CA CALCIUM ION × 1 X-RAY DIFFRACTION X-ray crystallization conditions:17% POLYETHYLENE GLYCOL 6000, 0.5 M LICL, 0.1 M TRIS, PH 8 Resolution 1.55 Å R-free 0.176

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

20 other PDB entries and 67 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name CXAR_HUMAN
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 3–128; UniProt 15–140

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 2wbw

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 2wbw
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2. Structure Basics 2. Structure Basics

Entry ID entry_id2wbw
Deposition date deposition_date2009-03-05
Structure title titleAd37 fibre head in complex with CAR D1 and sialic acid
Keywords keywords;ALTERNATIVE SPLICING, IMMUNOGLOBULIN DOMAIN, TRANSMEMBRANE, PHOSPHOPROTEIN, DISULFIDE BOND, PHOSPHORYLATION, HEMAGGLUTINATION, STRUCTURAL PROTEIN, RECEPTOR, PALMITATE, ADENOVIRUS, ERYTHROCYTE, LIPOPROTEIN, SIALIC ACID, POLYMORPHISM, GLYCOPROTEIN, CELL JUNCTION, CELL MEMBRANE, CELL ADHESION, CAR, AD37, HAD37, COMPLEX, MEMBRANE, SECRETED, TIGHT JUNCTION, RED BLOOD CELL, COXSACKIEVIRUS, HOST-VIRUS INTERACTION, VIRAL PROTEIN-RECEPTOR COMPLEX ;; STRUCTURAL PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier20.86
Radius of gyration Rg (electron density) rg_electron19.73
Forward intensity I(0) i019079300.00
Molecular weight molecular_weight34020.0 kDa
Excluded volume excluded_volume43018 ų
Envelope volume envelope_volume50119 ų
Hydration-shell volume shell_volume21159 ų
Envelope diameter envelope_diameter65.6
Shell Rg shell_rg26.04
Envelope Rg envelope_rg19.88
Shape Rg shape_rg19.72
Total Rg total_rg20.68
Total atoms total_atoms2397
Residues n_residues302
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax65.2
Rg (real space) rg_real20.74
Rg uncertainty (real space) rg_real_error0.31
I(0) (real space) i0_real1.9080e+07
I(0) uncertainty (real space) i0_real_error2.4180e+05
Rg (reciprocal space) rg_reciprocal20.76
I(0) (reciprocal space) i0_reciprocal19080000.0000
Solution quality estimate total_estimate0.9018
Solution quality rating solution_quality EXCELLENT a EXCELLENT solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary26.4
Skewness Skewness skewness0.152
Kurtosis Kurtosis kurtosis-0.455
Angular range angular_range— – 0.3800 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha3352000.0000
Real-space data points n_real_points70
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.915; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.992; Smooth: 0.981

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (5)

7. Fold Classification (SCOP + CATH) 4 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd2wbwa_
Class classb — All beta proteins
Fold Fold foldb.21 — Virus attachment protein globular domain
Superfamily Superfamily superfamilyb.21.1 — Virus attachment protein globular domain
Family Family familyb.21.1.1 — Adenovirus fiber protein 'knob' domain
Domain ID domain_idd2wbwb_
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.1 — Immunoglobulin
Family Family familyb.1.1.1 — V set domains (antibody variable domain-like)

CATH v4.4 (2 domains)

Domain ID domain_id2wbwA00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)
Homologous superfamily homologous superfamily10 — Adenovirus pIV-related, attachment domain
Domain ID domain_id2wbwB00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins

8. Citations (1)

9. Files and Curves (10)