2wg1

TERNARY COMPLEX OF THE AGED CONJUGATE OF TORPEDO CALIFORNICA ACEYLCHOLINESTERASE WITH SOMAN AND 2-PAM

Method: X-RAY DIFFRACTION Dmax: 78.7 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

ACETYLCHOLINESTERASE

OrganismNot specified

UniProt P04058

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Other combination Homooligomer Protein × 2 其他Polymer 1 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 22–558 Fragment:RESIDUES 22-558 alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 2 GB METHYLPHOSPHONIC ACID ESTER GROUP × 2 FP1 N-hydroxy-1-(1-methylpyridin-2(1H)-ylidene)methanamine × 2 MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID × 8 PG4 TETRAETHYLENE GLYCOL × 8 PGE TRIETHYLENE GLYCOL × 6 PEG DI(HYDROXYETHYL)ETHER × 10 X-RAY DIFFRACTION X-ray crystallization conditions:pH 5.8;277 K;ACHE WAS CRYSTALLIZED IN 34% PEG200, 150 MM MES, PH 6, 4 DEG. C. THE CRYSTAL WAS SOAKED FOR 2 HOURS IN 1.3 MM SOMAN, AT PH 6, 4 DEG C. THEN FOR 22 HOURS IN 10 MM 2-PAM, AT PH 6, 4 DEG C.. THEN FLASH-COOLED IN LN2. Resolution 2.20 Å R-free 0.212

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

124 other PDB entries and 125 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ACES_TORCA
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–537; UniProt 22–558

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 2wg1

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 2wg1
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2. Structure Basics 2. Structure Basics

Entry ID entry_id2wg1
Deposition date deposition_date2009-04-15
Structure title titleTERNARY COMPLEX OF THE AGED CONJUGATE OF TORPEDO CALIFORNICA ACEYLCHOLINESTERASE WITH SOMAN AND 2-PAM
Keywords keywords;CELL MEMBRANE, DISULFIDE BOND, SERINE ESTERASE, 2-PAM, OXIME, SOMAN, AGING, SYNAPSE, MEMBRANE, NEUROTRANSMITTER DEGRADATION, ALPHA/BETA HYDROLASE, ALTERNATIVE SPLICING, REACTIVATOR, GLYCOPROTEIN, CELL JUNCTION, NEUROTRANSMITTER CLEAVAGE, CONFORMATIONAL FLEXIBILITY, HYDROLASE, GPI-ANCHOR, GPI- ANCHOR, LIPOPROTEIN, ORGANOPHOSPHATE, SYNAPSE MEMBRANE, ALZHEIMER DISEASE ;; HYDROLASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier24.21
Radius of gyration Rg (electron density) rg_electron22.91
Forward intensity I(0) i064594100.00
Molecular weight molecular_weight63418.0 kDa
Excluded volume excluded_volume79536 ų
Envelope volume envelope_volume90035 ų
Hydration-shell volume shell_volume31318 ų
Envelope diameter envelope_diameter78.6
Shell Rg shell_rg31.43
Envelope Rg envelope_rg23.32
Shape Rg shape_rg22.84
Total Rg total_rg24.04
Total atoms total_atoms4461
Residues n_residues532
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax78.7
Rg (real space) rg_real24.05
Rg uncertainty (real space) rg_real_error0.40
I(0) (real space) i0_real6.4590e+07
I(0) uncertainty (real space) i0_real_error8.2970e+05
Rg (reciprocal space) rg_reciprocal24.09
I(0) (reciprocal space) i0_reciprocal64600000.0000
Solution quality estimate total_estimate0.8837
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary30.7
Skewness Skewness skewness0.167
Kurtosis Kurtosis kurtosis-0.373
Angular range angular_range— – 0.3300 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha20400000.0000
Real-space data points n_real_points65
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.830; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.996; Smooth: 0.998

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (10)

7. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd2wg1a_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.69 — alpha/beta-Hydrolases
Superfamily Superfamily superfamilyc.69.1 — alpha/beta-Hydrolases
Family Family familyc.69.1.1 — Acetylcholinesterase-like

CATH v4.4 (1 domains)

Domain ID domain_id2wg1A00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily1820 — Alpha/Beta hydrolase fold, catalytic domain

8. Citations (1)

9. Files and Curves (10)