2x53

Structure of the phage p2 baseplate in its activated conformation with Sr

Method: X-RAY DIFFRACTION
▼

1. 蛋白身份与相关结构 Protein Identity & Related Structures

PUTATIVE RECEPTOR BINDING PROTEIN

LACTOCOCCUS PHAGE P2

UniProt Q1RNF7

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 54 ORF16 × 6 ORF15 × 12 STRONTIUM ION × 12 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 Q1RNF7_9CAUD
Isoform —
PDB实体 2
链与序列区间 作者链 A; PDB构建体 1–263; UniProt 2–264 作者链 B; PDB构建体 1–263; UniProt 2–264 作者链 C; PDB构建体 1–263; UniProt 2–264 作者链 D; PDB构建体 1–263; UniProt 2–264 作者链 E; PDB构建体 1–263; UniProt 2–264 作者链 F; PDB构建体 1–263; UniProt 2–264 作者链 G; PDB构建体 1–263; UniProt 2–264 作者链 H; PDB构建体 1–263; UniProt 2–264 作者链 I; PDB构建体 1–263; UniProt 2–264 作者链 J; PDB构建体 1–263; UniProt 2–264 作者链 K; PDB构建体 1–263; UniProt 2–264 作者链 L; PDB构建体 1–263; UniProt 2–264 作者链 M; PDB构建体 1–263; UniProt 2–264 作者链 N; PDB构建体 1–263; UniProt 2–264 作者链 O; PDB构建体 1–263; UniProt 2–264 作者链 P; PDB构建体 1–263; UniProt 2–264 作者链 Q; PDB构建体 1–263; UniProt 2–264 作者链 R; PDB构建体 1–263; UniProt 2–264

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

▼

2. 结构基本信息 2. Structure Basics

条目编号 entry_id2x53
沉积日期 deposition_date2010-02-05
结构标题 titleStructure of the phage p2 baseplate in its activated conformation with Sr
关键词 keywordsBASEPLATE, VIRAL PROTEIN; VIRAL PROTEIN
实验方法 methodX-RAY DIFFRACTION
▼

3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

2x53__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

2x53__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

2x53__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)98.24 Å
Rg(电子密度)97.16 Å
总 Rg97.07 Å
原子数119484
残基数15276
排除体积2121600 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 2x53__assembly_1__model_1 54-meric (54) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
▶

4. 晶体学与实验 4. Crystallography & Experiment

▶

5. 实体与聚合物信息 Entities & Polymers (4)

▼

6. 折叠分类 (SCOP + CATH) 57 domains

CATH v4.4 (57 domains)

结构域编号 domain_id2x53101
类 Class class2 — Mainly Beta
架构 Architecture architecture30 — Roll
拓扑 Topology topology300 — Phage tail proteins - horseshoe like beta roll fold
同源超家族 H-superfamily homologous superfamily20 — Phage tail base-plate attachment protein, domain D1/D2
结构域编号 domain_id2x53102
类 Class class3 — Alpha Beta
架构 Architecture architecture55 — 3-Layer(bab) Sandwich
拓扑 Topology topology50 — Phage tail protein beta-alpha-beta fold
同源超家族 H-superfamily homologous superfamily50 — Phage tail base-plate attachment protein, domain D4
结构域编号 domain_id2x53103
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1920 — Phage tail proteins - 2 layer sandwich fold
同源超家族 H-superfamily homologous superfamily20 — Phage tail base-plate attachment protein, domain D3
结构域编号 domain_id2x53A01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology520 — Triple-stranded beta-helix
同源超家族 H-superfamily homologous superfamily10 — Phage fibre proteins
结构域编号 domain_id2x53A02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
结构域编号 domain_id2x53B01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology520 — Triple-stranded beta-helix
同源超家族 H-superfamily homologous superfamily10 — Phage fibre proteins
结构域编号 domain_id2x53B02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
结构域编号 domain_id2x53C01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology520 — Triple-stranded beta-helix
同源超家族 H-superfamily homologous superfamily10 — Phage fibre proteins
结构域编号 domain_id2x53C02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
结构域编号 domain_id2x53D01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology520 — Triple-stranded beta-helix
同源超家族 H-superfamily homologous superfamily10 — Phage fibre proteins
结构域编号 domain_id2x53D02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
结构域编号 domain_id2x53E01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology520 — Triple-stranded beta-helix
同源超家族 H-superfamily homologous superfamily10 — Phage fibre proteins
结构域编号 domain_id2x53E02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
结构域编号 domain_id2x53F01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology520 — Triple-stranded beta-helix
同源超家族 H-superfamily homologous superfamily10 — Phage fibre proteins
结构域编号 domain_id2x53F02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
结构域编号 domain_id2x53G01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology520 — Triple-stranded beta-helix
同源超家族 H-superfamily homologous superfamily10 — Phage fibre proteins
结构域编号 domain_id2x53G02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
结构域编号 domain_id2x53H01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology520 — Triple-stranded beta-helix
同源超家族 H-superfamily homologous superfamily10 — Phage fibre proteins
结构域编号 domain_id2x53H02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
结构域编号 domain_id2x53I01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology520 — Triple-stranded beta-helix
同源超家族 H-superfamily homologous superfamily10 — Phage fibre proteins
结构域编号 domain_id2x53I02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
结构域编号 domain_id2x53J01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology520 — Triple-stranded beta-helix
同源超家族 H-superfamily homologous superfamily10 — Phage fibre proteins
结构域编号 domain_id2x53J02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
结构域编号 domain_id2x53K01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology520 — Triple-stranded beta-helix
同源超家族 H-superfamily homologous superfamily10 — Phage fibre proteins
结构域编号 domain_id2x53K02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
结构域编号 domain_id2x53L01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology520 — Triple-stranded beta-helix
同源超家族 H-superfamily homologous superfamily10 — Phage fibre proteins
结构域编号 domain_id2x53L02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
结构域编号 domain_id2x53M01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology520 — Triple-stranded beta-helix
同源超家族 H-superfamily homologous superfamily10 — Phage fibre proteins
结构域编号 domain_id2x53M02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
结构域编号 domain_id2x53N01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology520 — Triple-stranded beta-helix
同源超家族 H-superfamily homologous superfamily10 — Phage fibre proteins
结构域编号 domain_id2x53N02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
结构域编号 domain_id2x53O01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology520 — Triple-stranded beta-helix
同源超家族 H-superfamily homologous superfamily10 — Phage fibre proteins
结构域编号 domain_id2x53O02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
结构域编号 domain_id2x53P01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology520 — Triple-stranded beta-helix
同源超家族 H-superfamily homologous superfamily10 — Phage fibre proteins
结构域编号 domain_id2x53P02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
结构域编号 domain_id2x53Q01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology520 — Triple-stranded beta-helix
同源超家族 H-superfamily homologous superfamily10 — Phage fibre proteins
结构域编号 domain_id2x53Q02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
结构域编号 domain_id2x53R01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology520 — Triple-stranded beta-helix
同源超家族 H-superfamily homologous superfamily10 — Phage fibre proteins
结构域编号 domain_id2x53R02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
结构域编号 domain_id2x53S01
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily210 —
结构域编号 domain_id2x53S02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily880 —
结构域编号 domain_id2x53T01
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily210 —
结构域编号 domain_id2x53T02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily880 —
结构域编号 domain_id2x53U01
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily210 —
结构域编号 domain_id2x53U02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily880 —
结构域编号 domain_id2x53V01
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily210 —
结构域编号 domain_id2x53V02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily880 —
结构域编号 domain_id2x53W01
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily210 —
结构域编号 domain_id2x53W02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily880 —
结构域编号 domain_id2x53X01
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily210 —
结构域编号 domain_id2x53X02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily880 —
结构域编号 domain_id2x53Y01
类 Class class2 — Mainly Beta
架构 Architecture architecture30 — Roll
拓扑 Topology topology300 — Phage tail proteins - horseshoe like beta roll fold
同源超家族 H-superfamily homologous superfamily20 — Phage tail base-plate attachment protein, domain D1/D2
结构域编号 domain_id2x53Y02
类 Class class3 — Alpha Beta
架构 Architecture architecture55 — 3-Layer(bab) Sandwich
拓扑 Topology topology50 — Phage tail protein beta-alpha-beta fold
同源超家族 H-superfamily homologous superfamily50 — Phage tail base-plate attachment protein, domain D4
结构域编号 domain_id2x53Y03
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1920 — Phage tail proteins - 2 layer sandwich fold
同源超家族 H-superfamily homologous superfamily20 — Phage tail base-plate attachment protein, domain D3
结构域编号 domain_id2x53Z01
类 Class class2 — Mainly Beta
架构 Architecture architecture30 — Roll
拓扑 Topology topology300 — Phage tail proteins - horseshoe like beta roll fold
同源超家族 H-superfamily homologous superfamily20 — Phage tail base-plate attachment protein, domain D1/D2
结构域编号 domain_id2x53Z02
类 Class class3 — Alpha Beta
架构 Architecture architecture55 — 3-Layer(bab) Sandwich
拓扑 Topology topology50 — Phage tail protein beta-alpha-beta fold
同源超家族 H-superfamily homologous superfamily50 — Phage tail base-plate attachment protein, domain D4
结构域编号 domain_id2x53Z03
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1920 — Phage tail proteins - 2 layer sandwich fold
同源超家族 H-superfamily homologous superfamily20 — Phage tail base-plate attachment protein, domain D3
▶

7. 引用文献 (1)