2x53

Structure of the phage p2 baseplate in its activated conformation with Sr

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

PUTATIVE RECEPTOR BINDING PROTEIN

LACTOCOCCUS PHAGE P2

UniProt Q1RNF7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 54 ORF16 × 6 ORF15 × 12 STRONTIUM ION × 12 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q1RNF7_9CAUD
Isoform —
PDB entities 2
Chains and sequence ranges Author chain A; PDBConstruct 1–263; UniProt 2–264 Author chain B; PDBConstruct 1–263; UniProt 2–264 Author chain C; PDBConstruct 1–263; UniProt 2–264 Author chain D; PDBConstruct 1–263; UniProt 2–264 Author chain E; PDBConstruct 1–263; UniProt 2–264 Author chain F; PDBConstruct 1–263; UniProt 2–264 Author chain G; PDBConstruct 1–263; UniProt 2–264 Author chain H; PDBConstruct 1–263; UniProt 2–264 Author chain I; PDBConstruct 1–263; UniProt 2–264 Author chain J; PDBConstruct 1–263; UniProt 2–264 Author chain K; PDBConstruct 1–263; UniProt 2–264 Author chain L; PDBConstruct 1–263; UniProt 2–264 Author chain M; PDBConstruct 1–263; UniProt 2–264 Author chain N; PDBConstruct 1–263; UniProt 2–264 Author chain O; PDBConstruct 1–263; UniProt 2–264 Author chain P; PDBConstruct 1–263; UniProt 2–264 Author chain Q; PDBConstruct 1–263; UniProt 2–264 Author chain R; PDBConstruct 1–263; UniProt 2–264

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id2x53
Deposition date deposition_date2010-02-05
Structure title titleStructure of the phage p2 baseplate in its activated conformation with Sr
Keywords keywordsBASEPLATE, VIRAL PROTEIN; VIRAL PROTEIN
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

2x53__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

2x53__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

2x53__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)98.24 Å
Rg (electron density)97.16 Å
Total Rg97.07 Å
Atom count119484
Residues15276
Excluded volume2121600 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 2x53__assembly_1__model_1 54-meric (54) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (4)

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6. Fold Classification (SCOP + CATH) 57 domains

CATH v4.4 (57 domains)

Domain ID domain_id2x53101
Class class2 — Mainly Beta
Architecture architecture30 — Roll
Topology topology300 — Phage tail proteins - horseshoe like beta roll fold
Homologous superfamily homologous superfamily20 — Phage tail base-plate attachment protein, domain D1/D2
Domain ID domain_id2x53102
Class class3 — Alpha Beta
Architecture architecture55 — 3-Layer(bab) Sandwich
Topology topology50 — Phage tail protein beta-alpha-beta fold
Homologous superfamily homologous superfamily50 — Phage tail base-plate attachment protein, domain D4
Domain ID domain_id2x53103
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1920 — Phage tail proteins - 2 layer sandwich fold
Homologous superfamily homologous superfamily20 — Phage tail base-plate attachment protein, domain D3
Domain ID domain_id2x53A01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology520 — Triple-stranded beta-helix
Homologous superfamily homologous superfamily10 — Phage fibre proteins
Domain ID domain_id2x53A02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
Domain ID domain_id2x53B01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology520 — Triple-stranded beta-helix
Homologous superfamily homologous superfamily10 — Phage fibre proteins
Domain ID domain_id2x53B02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
Domain ID domain_id2x53C01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology520 — Triple-stranded beta-helix
Homologous superfamily homologous superfamily10 — Phage fibre proteins
Domain ID domain_id2x53C02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
Domain ID domain_id2x53D01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology520 — Triple-stranded beta-helix
Homologous superfamily homologous superfamily10 — Phage fibre proteins
Domain ID domain_id2x53D02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
Domain ID domain_id2x53E01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology520 — Triple-stranded beta-helix
Homologous superfamily homologous superfamily10 — Phage fibre proteins
Domain ID domain_id2x53E02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
Domain ID domain_id2x53F01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology520 — Triple-stranded beta-helix
Homologous superfamily homologous superfamily10 — Phage fibre proteins
Domain ID domain_id2x53F02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
Domain ID domain_id2x53G01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology520 — Triple-stranded beta-helix
Homologous superfamily homologous superfamily10 — Phage fibre proteins
Domain ID domain_id2x53G02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
Domain ID domain_id2x53H01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology520 — Triple-stranded beta-helix
Homologous superfamily homologous superfamily10 — Phage fibre proteins
Domain ID domain_id2x53H02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
Domain ID domain_id2x53I01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology520 — Triple-stranded beta-helix
Homologous superfamily homologous superfamily10 — Phage fibre proteins
Domain ID domain_id2x53I02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
Domain ID domain_id2x53J01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology520 — Triple-stranded beta-helix
Homologous superfamily homologous superfamily10 — Phage fibre proteins
Domain ID domain_id2x53J02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
Domain ID domain_id2x53K01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology520 — Triple-stranded beta-helix
Homologous superfamily homologous superfamily10 — Phage fibre proteins
Domain ID domain_id2x53K02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
Domain ID domain_id2x53L01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology520 — Triple-stranded beta-helix
Homologous superfamily homologous superfamily10 — Phage fibre proteins
Domain ID domain_id2x53L02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
Domain ID domain_id2x53M01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology520 — Triple-stranded beta-helix
Homologous superfamily homologous superfamily10 — Phage fibre proteins
Domain ID domain_id2x53M02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
Domain ID domain_id2x53N01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology520 — Triple-stranded beta-helix
Homologous superfamily homologous superfamily10 — Phage fibre proteins
Domain ID domain_id2x53N02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
Domain ID domain_id2x53O01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology520 — Triple-stranded beta-helix
Homologous superfamily homologous superfamily10 — Phage fibre proteins
Domain ID domain_id2x53O02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
Domain ID domain_id2x53P01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology520 — Triple-stranded beta-helix
Homologous superfamily homologous superfamily10 — Phage fibre proteins
Domain ID domain_id2x53P02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
Domain ID domain_id2x53Q01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology520 — Triple-stranded beta-helix
Homologous superfamily homologous superfamily10 — Phage fibre proteins
Domain ID domain_id2x53Q02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
Domain ID domain_id2x53R01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology520 — Triple-stranded beta-helix
Homologous superfamily homologous superfamily10 — Phage fibre proteins
Domain ID domain_id2x53R02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily1830 — Phage tail base-plate Siphoviridae RBP, head domain
Domain ID domain_id2x53S01
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
Homologous superfamily homologous superfamily210 —
Domain ID domain_id2x53S02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology120 — Jelly Rolls
Homologous superfamily homologous superfamily880 —
Domain ID domain_id2x53T01
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
Homologous superfamily homologous superfamily210 —
Domain ID domain_id2x53T02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology120 — Jelly Rolls
Homologous superfamily homologous superfamily880 —
Domain ID domain_id2x53U01
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
Homologous superfamily homologous superfamily210 —
Domain ID domain_id2x53U02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology120 — Jelly Rolls
Homologous superfamily homologous superfamily880 —
Domain ID domain_id2x53V01
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
Homologous superfamily homologous superfamily210 —
Domain ID domain_id2x53V02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology120 — Jelly Rolls
Homologous superfamily homologous superfamily880 —
Domain ID domain_id2x53W01
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
Homologous superfamily homologous superfamily210 —
Domain ID domain_id2x53W02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology120 — Jelly Rolls
Homologous superfamily homologous superfamily880 —
Domain ID domain_id2x53X01
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
Homologous superfamily homologous superfamily210 —
Domain ID domain_id2x53X02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology120 — Jelly Rolls
Homologous superfamily homologous superfamily880 —
Domain ID domain_id2x53Y01
Class class2 — Mainly Beta
Architecture architecture30 — Roll
Topology topology300 — Phage tail proteins - horseshoe like beta roll fold
Homologous superfamily homologous superfamily20 — Phage tail base-plate attachment protein, domain D1/D2
Domain ID domain_id2x53Y02
Class class3 — Alpha Beta
Architecture architecture55 — 3-Layer(bab) Sandwich
Topology topology50 — Phage tail protein beta-alpha-beta fold
Homologous superfamily homologous superfamily50 — Phage tail base-plate attachment protein, domain D4
Domain ID domain_id2x53Y03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1920 — Phage tail proteins - 2 layer sandwich fold
Homologous superfamily homologous superfamily20 — Phage tail base-plate attachment protein, domain D3
Domain ID domain_id2x53Z01
Class class2 — Mainly Beta
Architecture architecture30 — Roll
Topology topology300 — Phage tail proteins - horseshoe like beta roll fold
Homologous superfamily homologous superfamily20 — Phage tail base-plate attachment protein, domain D1/D2
Domain ID domain_id2x53Z02
Class class3 — Alpha Beta
Architecture architecture55 — 3-Layer(bab) Sandwich
Topology topology50 — Phage tail protein beta-alpha-beta fold
Homologous superfamily homologous superfamily50 — Phage tail base-plate attachment protein, domain D4
Domain ID domain_id2x53Z03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1920 — Phage tail proteins - 2 layer sandwich fold
Homologous superfamily homologous superfamily20 — Phage tail base-plate attachment protein, domain D3
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7. Citations (1)