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2xpj

Crystal structure of Physalis Mottle Virus with intact ordered RNA

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

COAT PROTEIN

OrganismNot specified

UniProt P36351

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Homooligomer Protein 180 RNA 60 5'-R(CP*CP*CP)-3' × 60 Consistent with all polymers
2 Protein–RNA Homooligomer Protein 3 RNA 1 5'-R(CP*CP*CP)-3' × 1 Consistent with all polymers
3 Protein–RNA Homooligomer Protein 15 RNA 5 5'-R(CP*CP*CP)-3' × 5 Consistent with all polymers
4 Protein–RNA Homooligomer Protein 18 RNA 6 5'-R(CP*CP*CP)-3' × 6 Consistent with all polymers
5 Protein–RNA Homooligomer Protein 3 RNA 1 5'-R(CP*CP*CP)-3' × 1 Consistent with all polymers

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers
1e57 1e57 1e57 1e57 1e57 1e57 1qjz 1qjz 1qjz 1qjz 1qjz 2wws

17 assemblies; showing the first 12

Heteromeric or nucleic-acid complex
2xpj 2xpj 2xpj 2xpj 2xpj

5 assemblies

View Construct and Data Evidence
UniProt name COAT_PHMV
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 1–188； UniProt 1–188 Author chain B； PDBConstruct 1–188； UniProt 1–188 Author chain C； PDBConstruct 1–188； UniProt 1–188

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id2xpj
Deposition date deposition_date2010-08-26
Structure title titleCrystal structure of Physalis Mottle Virus with intact ordered RNA
Keywords keywordsVIRUS, PLANT RNA VIRUS; VIRUS
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

2xpj__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

2xpj__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 1011 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

2xpj__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）0.00 Å
Rg (electron density)129.20 Å
Total Rg129.10 Å
Atom count240060
Residues31980
Excluded volume4324900 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 2xpj__assembly_1__model_1 240-MERIC （240） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 2xpj__assembly_2__model_1 tetrameric （4） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
3 1 2xpj__assembly_3__model_1 eicosameric （20） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
4 1 2xpj__assembly_4__model_1 24-meric （24） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
5 1 2xpj__assembly_5__model_1 tetrameric （4） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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6. Fold Classification (SCOP + CATH) 3 domains

CATH v4.4 (3 domains)

Domain ID domain_id2xpjA00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology120 — Jelly Rolls
Homologous superfamily homologous superfamily20 —
Domain ID domain_id2xpjB00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology120 — Jelly Rolls
Homologous superfamily homologous superfamily20 —
Domain ID domain_id2xpjC00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology120 — Jelly Rolls
Homologous superfamily homologous superfamily20 —
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7. Citations (1)