SAXSdb — 2xut

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1. Protein Identity and Related Structures Protein Identity & Related Structures

PROTON/PEPTIDE SYMPORTER FAMILY PROTEIN

SHEWANELLA ONEIDENSIS

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein monomer	Monomer	Protein 1	No other associated polymer	Consistent with protein count
2	Protein monomer	Monomer	Protein 1	No other associated polymer	Consistent with protein count
3	Protein monomer	Monomer	Protein 1	No other associated polymer	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	Q8EKT7_SHEON
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain A； PDBConstruct 1–516； UniProt 1–516 Author chain B； PDBConstruct 1–516； UniProt 1–516 Author chain C； PDBConstruct 1–516； UniProt 1–516

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	2xut
Deposition date deposition_date	2010-10-21
Structure title title	Crystal structure of a proton dependent oligopeptide (POT) family transporter.
Keywords keywords	TRANSPORT PROTEIN, MEMBRANE PROTEIN, MAJOR FACILITATOR SUPERFAMILY TRANSPORTER, PROTON COUPLED PEPTIDE TRANSPORT; TRANSPORT PROTEIN
Experimental Method method	X-RAY DIFFRACTION

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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

2xut__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

2xut__assembly_1__model_1 | I(q)

100 plotted points; both axes use logarithmic scales.

2xut__assembly_1__model_1 | P(r) · Pending

P(r) will be calculated and displayed separately for the same assembly/model.

Rg（Guinier）	24.18 Å
Rg (electron density)	23.16 Å
Total Rg	24.28 Å
Atom count	3511
Residues	456
Excluded volume	64393 Å³
Maximum q	0.500 Å⁻¹

Assembly	Model	Structure unit	Oligomeric description	Status	CRYSOL	Actions
1	1	`2xut__assembly_1__model_1`	monomeric （1）	Success	4.1.3-1-20251215 (887e7ef)	View Download
2	1	`2xut__assembly_2__model_1`	monomeric （1）	Success	4.1.3-1-20251215 (887e7ef)	View Download
3	1	`2xut__assembly_3__model_1`	monomeric （1）	Success	4.1.3-1-20251215 (887e7ef)	View Download

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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (1)

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6. Fold Classification (SCOP + CATH) 6 domains

SCOP 2.08 (3 domains)

Domain ID domain_id	d2xuta_
Class class	f — Membrane and cell surface proteins and peptides
Fold Fold fold	f.38 — MFS general substrate transporter
Superfamily Superfamily superfamily	f.38.1 — MFS general substrate transporter
Family Family family	f.38.1.3 — Proton-dependent oligopeptide transporter (POT or PTR2) / nitrate transporter NRT1 family

Domain ID domain_id	d2xutb_
Class class	f — Membrane and cell surface proteins and peptides
Fold Fold fold	f.38 — MFS general substrate transporter
Superfamily Superfamily superfamily	f.38.1 — MFS general substrate transporter
Family Family family	f.38.1.3 — Proton-dependent oligopeptide transporter (POT or PTR2) / nitrate transporter NRT1 family

Domain ID domain_id	d2xutc_
Class class	f — Membrane and cell surface proteins and peptides
Fold Fold fold	f.38 — MFS general substrate transporter
Superfamily Superfamily superfamily	f.38.1 — MFS general substrate transporter
Family Family family	f.38.1.3 — Proton-dependent oligopeptide transporter (POT or PTR2) / nitrate transporter NRT1 family

CATH v4.4 (3 domains)

Domain ID domain_id	2xutA00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	1250 — Growth Hormone; Chain: A;
Homologous superfamily homologous superfamily	20 — MFS general substrate transporter like domains

Domain ID domain_id	2xutB00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	1250 — Growth Hormone; Chain: A;
Homologous superfamily homologous superfamily	20 — MFS general substrate transporter like domains

Domain ID domain_id	2xutC00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	1250 — Growth Hormone; Chain: A;
Homologous superfamily homologous superfamily	20 — MFS general substrate transporter like domains

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Unit-cell length a length_a	159.400 Å
Unit-cell length b length_b	159.400 Å
Unit-cell length c length_c	152.940 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	90.00 °
Unit-cell angle γ angle_gamma	120.00 °
Molecules per unit cell Z z_pdb	9

Space group space_group	P 32
Space-group number int_tables_number	145
Crystal system crystal_system	—

Resolution resolution	3.620 Å
Low-resolution limit resolution_low	35.470 Å
R factor r_factor	0.2776
R_work r_work	0.2765
R_free r_free	0.2963

Description description	PROTON/PEPTIDE SYMPORTER FAMILY PROTEIN
Molecular weight formula_weight	57684.8 kDa
Mutation mutation	YES
Source method src_method	man
Copy count entity_count	3

Polymer type type	polypeptide(L)
Chain IDs strand_id	A,B,C
Atom count atom_count	10533

Crystal structure of a proton dependent oligopeptide (POT) family transporter.

1. Protein Identity and Related Structures Protein Identity & Related Structures

PROTON/PEPTIDE SYMPORTER FAMILY PROTEIN

State in the Current Structure

Other States of the Same Protein in the Database

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

2xut__assembly_1__model_1

2xut__assembly_1__model_1 | I(q)

2xut__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

Refinement Refinement

Diffraction experiment Diffraction

5. Entities and Polymers Entities & Polymers (1)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

6. Fold Classification (SCOP + CATH) 6 domains

SCOP 2.08 (3 domains)

CATH v4.4 (3 domains)

7. Citations (1)

Source organism organism	SHEWANELLA ONEIDENSIS
NCBI taxonomy ID ncbi_taxonomy_id	211586
Host organism host_organism	ESCHERICHIA COLI BL21(DE3)

Crystal structure of a proton dependent oligopeptide (POT) family transporter.

1. Protein Identity and Related Structures Protein Identity & Related Structures

PROTON/PEPTIDE SYMPORTER FAMILY PROTEIN

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

2xut__assembly_1__model_1

2xut__assembly_1__model_1 | I(q)

2xut__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

Refinement Refinement

Diffraction experiment Diffraction

5. Entities and Polymers Entities & Polymers (1)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

6. Fold Classification (SCOP + CATH) 6 domains

SCOP 2.08 (3 domains)

CATH v4.4 (3 domains)

7. Citations (1)