2ycx

TURKEY BETA1 ADRENERGIC RECEPTOR WITH STABILISING MUTATIONS AND BOUND ANTAGONIST CYANOPINDOLOL

Method: X-RAY DIFFRACTION Dmax: 87.2 Å Quality: EXCELLENT

1. Protein Identity and Related Structures Protein Identity & Related Structures

BETA-1 ADRENERGIC RECEPTOR

MELEAGRIS GALLOPAVO

UniProt P07700

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 33–367 Fragment:RESIDUES 33-243,272-276,279-367 Mutation:YES P32 Cyanopindolol × 1 X-RAY DIFFRACTION X-ray crystallization conditions:pH 7.3;pH 7.3 Resolution 3.25 Å R-free 0.325
2 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain B; UniProt 33–367 Fragment:RESIDUES 33-243,272-276,279-367 Mutation:YES P32 Cyanopindolol × 1 SOG octyl 1-thio-beta-D-glucopyranoside × 3 X-RAY DIFFRACTION X-ray crystallization conditions:pH 7.3;pH 7.3 Resolution 3.25 Å R-free 0.325

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

25 other PDB entries and 54 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ADRB1_MELGA
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 3–307; UniProt 33–367 Author chain B; PDBConstruct 3–307; UniProt 33–367

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 2ycx

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 2ycx
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2. Structure Basics 2. Structure Basics

Entry ID entry_id2ycx
Deposition date deposition_date2011-03-17
Structure title titleTURKEY BETA1 ADRENERGIC RECEPTOR WITH STABILISING MUTATIONS AND BOUND ANTAGONIST CYANOPINDOLOL
Keywords keywords;RECEPTOR, TRANSDUCER, ANTAGONIST BOUND FORM, INTEGRAL MEMBRANE PROTEIN, G-PROTEIN COUPLED RECEPTOR, THERMOSTABILISING POINT MUTATIONS, SEVEN-HELIX RECEPTOR, 7TM RECEPTOR, GPCR ;; RECEPTOR
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier27.91
Radius of gyration Rg (electron density) rg_electron26.54
Forward intensity I(0) i061606100.00
Molecular weight molecular_weight66871.0 kDa
Excluded volume excluded_volume86343 ų
Envelope volume envelope_volume107900 ų
Hydration-shell volume shell_volume33372 ų
Envelope diameter envelope_diameter93.9
Shell Rg shell_rg34.18
Envelope Rg envelope_rg26.91
Shape Rg shape_rg26.51
Total Rg total_rg27.56
Total atoms total_atoms4696
Residues n_residues576
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax87.2
Rg (real space) rg_real27.75
Rg uncertainty (real space) rg_real_error0.48
I(0) (real space) i0_real6.1610e+07
I(0) uncertainty (real space) i0_real_error8.4680e+05
Rg (reciprocal space) rg_reciprocal27.80
I(0) (reciprocal space) i0_reciprocal61610000.0000
Solution quality estimate total_estimate0.9069
Solution quality rating solution_quality EXCELLENT a EXCELLENT solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary38.2
Skewness Skewness skewness0.111
Kurtosis Kurtosis kurtosis-0.558
Angular range angular_range— – 0.2850 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha12720000.0000
Real-space data points n_real_points58
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.937; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.997; Smooth: 0.976

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 2 domains

CATH v4.4 (2 domains)

Domain ID domain_id2ycxA00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1070 — Rhopdopsin 7-helix transmembrane proteins
Homologous superfamily homologous superfamily10 — Rhodopsin 7-helix transmembrane proteins
Domain ID domain_id2ycxB00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1070 — Rhopdopsin 7-helix transmembrane proteins
Homologous superfamily homologous superfamily10 — Rhodopsin 7-helix transmembrane proteins

8. Citations (1)

9. Files and Curves (10)