4ami

Turkey beta1 adrenergic receptor with stabilising mutations and bound biased agonist bucindolol

Method: X-RAY DIFFRACTION Dmax: 98.9 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

BETA-1 ADRENERGIC RECEPTOR

MELEAGRIS GALLOPAVO

UniProt P07700

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 33–243 Chain A; UniProt 272–368 Fragment:RESIDUES 33-243,272-368 Mutation:YES G90 2-[(2S)-3-[[1-(1H-indol-3-yl)-2-methyl-propan-2-yl]amino]-2-oxidanyl-propoxy]benzenecarbonitrile × 1 2CV HEGA-10 × 1 X-RAY DIFFRACTION X-ray crystallization conditions:pH 9;277 K;0.1 M BICINE PH 9.0, 22% PEG 600, 4 DEGREES CELSIUS. Resolution 3.20 Å R-free 0.279
2 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain B; UniProt 33–243 Chain B; UniProt 272–368 Fragment:RESIDUES 33-243,272-368 Mutation:YES G90 2-[(2S)-3-[[1-(1H-indol-3-yl)-2-methyl-propan-2-yl]amino]-2-oxidanyl-propoxy]benzenecarbonitrile × 1 2CV HEGA-10 × 4 X-RAY DIFFRACTION X-ray crystallization conditions:pH 9;277 K;0.1 M BICINE PH 9.0, 22% PEG 600, 4 DEGREES CELSIUS. Resolution 3.20 Å R-free 0.279

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

25 other PDB entries and 54 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ADRB1_MELGA
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 3–213; UniProt 33–243 Author chain A; PDBConstruct 214–310; UniProt 272–368 Author chain B; PDBConstruct 3–213; UniProt 33–243 Author chain B; PDBConstruct 214–310; UniProt 272–368

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 4ami

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 4ami
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2. Structure Basics 2. Structure Basics

Entry ID entry_id4ami
Deposition date deposition_date2012-03-11
Structure title titleTurkey beta1 adrenergic receptor with stabilising mutations and bound biased agonist bucindolol
Keywords keywordsMEMBRANE PROTEIN, 7TMR BETA1-ADRENOCEPTOR, STABILISING MUTATIONS, BIASED AGONIST; MEMBRANE PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier28.13
Radius of gyration Rg (electron density) rg_electron26.80
Forward intensity I(0) i058526700.00
Molecular weight molecular_weight66241.0 kDa
Excluded volume excluded_volume85845 ų
Envelope volume envelope_volume106890 ų
Hydration-shell volume shell_volume32950 ų
Envelope diameter envelope_diameter106.0
Shell Rg shell_rg34.07
Envelope Rg envelope_rg27.38
Shape Rg shape_rg26.76
Total Rg total_rg27.78
Total atoms total_atoms4660
Residues n_residues570
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax98.9
Rg (real space) rg_real28.02
Rg uncertainty (real space) rg_real_error0.88
I(0) (real space) i0_real5.8530e+07
I(0) uncertainty (real space) i0_real_error9.0900e+05
Rg (reciprocal space) rg_reciprocal28.06
I(0) (reciprocal space) i0_reciprocal58530000.0000
Solution quality estimate total_estimate0.6910
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary37.1
Skewness Skewness skewness0.210
Kurtosis Kurtosis kurtosis-0.400
Angular range angular_range— – 0.2800 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha12920000.0000
Real-space data points n_real_points57
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.767; Stabil: 1.000; Sysdev: 0.242; Positv: 1.000; Valcen: 0.971; Smooth: 0.981

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

7. Fold Classification (SCOP + CATH) 2 domains

CATH v4.4 (2 domains)

Domain ID domain_id4amiA00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1070 — Rhopdopsin 7-helix transmembrane proteins
Homologous superfamily homologous superfamily10 — Rhodopsin 7-helix transmembrane proteins
Domain ID domain_id4amiB00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1070 — Rhopdopsin 7-helix transmembrane proteins
Homologous superfamily homologous superfamily10 — Rhodopsin 7-helix transmembrane proteins

8. Citations (1)

9. Files and Curves (10)