3cir

E. coli Quinol fumarate reductase FrdA T234A mutation

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Fumarate reductase flavoprotein subunit

Escherichia coli

UniProt P00363

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 4 Fumarate reductase iron-sulfur subunit × 1 (P0AC47) Fumarate reductase subunit C × 1 (P0A8Q0) Fumarate reductase subunit D × 1 (P0A8Q3) FLAVIN-ADENINE DINUCLEOTIDE × 1 FE2/S2 (INORGANIC) CLUSTER × 1 FE3-S4 CLUSTER × 1 IRON/SULFUR CLUSTER × 1 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 4 Fumarate reductase iron-sulfur subunit × 1 (P0AC47) Fumarate reductase subunit C × 1 (P0A8Q0) Fumarate reductase subunit D × 1 (P0A8Q3) FLAVIN-ADENINE DINUCLEOTIDE × 1 FE2/S2 (INORGANIC) CLUSTER × 1 FE3-S4 CLUSTER × 1 IRON/SULFUR CLUSTER × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name FRDA_ECOLI
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–602; UniProt 1–602 Author chain M; PDBConstruct 1–602; UniProt 1–602

Fumarate reductase iron-sulfur subunit

Escherichia coli

UniProt P0AC47

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 4 Fumarate reductase flavoprotein subunit × 1 (P00363) Fumarate reductase subunit C × 1 (P0A8Q0) Fumarate reductase subunit D × 1 (P0A8Q3) FLAVIN-ADENINE DINUCLEOTIDE × 1 FE2/S2 (INORGANIC) CLUSTER × 1 FE3-S4 CLUSTER × 1 IRON/SULFUR CLUSTER × 1 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 4 Fumarate reductase flavoprotein subunit × 1 (P00363) Fumarate reductase subunit C × 1 (P0A8Q0) Fumarate reductase subunit D × 1 (P0A8Q3) FLAVIN-ADENINE DINUCLEOTIDE × 1 FE2/S2 (INORGANIC) CLUSTER × 1 FE3-S4 CLUSTER × 1 IRON/SULFUR CLUSTER × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name FRDB_ECOLI
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–243; UniProt 2–244 Author chain N; PDBConstruct 1–243; UniProt 2–244

Fumarate reductase subunit C

Escherichia coli

UniProt P0A8Q0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 4 Fumarate reductase flavoprotein subunit × 1 (P00363) Fumarate reductase iron-sulfur subunit × 1 (P0AC47) Fumarate reductase subunit D × 1 (P0A8Q3) FLAVIN-ADENINE DINUCLEOTIDE × 1 FE2/S2 (INORGANIC) CLUSTER × 1 FE3-S4 CLUSTER × 1 IRON/SULFUR CLUSTER × 1 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 4 Fumarate reductase flavoprotein subunit × 1 (P00363) Fumarate reductase iron-sulfur subunit × 1 (P0AC47) Fumarate reductase subunit D × 1 (P0A8Q3) FLAVIN-ADENINE DINUCLEOTIDE × 1 FE2/S2 (INORGANIC) CLUSTER × 1 FE3-S4 CLUSTER × 1 IRON/SULFUR CLUSTER × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name FRDC_ECOLI
Isoform —
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–130; UniProt 2–131 Author chain O; PDBConstruct 1–130; UniProt 2–131

Fumarate reductase subunit D

Escherichia coli

UniProt P0A8Q3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 4 Fumarate reductase flavoprotein subunit × 1 (P00363) Fumarate reductase iron-sulfur subunit × 1 (P0AC47) Fumarate reductase subunit C × 1 (P0A8Q0) FLAVIN-ADENINE DINUCLEOTIDE × 1 FE2/S2 (INORGANIC) CLUSTER × 1 FE3-S4 CLUSTER × 1 IRON/SULFUR CLUSTER × 1 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 4 Fumarate reductase flavoprotein subunit × 1 (P00363) Fumarate reductase iron-sulfur subunit × 1 (P0AC47) Fumarate reductase subunit C × 1 (P0A8Q0) FLAVIN-ADENINE DINUCLEOTIDE × 1 FE2/S2 (INORGANIC) CLUSTER × 1 FE3-S4 CLUSTER × 1 IRON/SULFUR CLUSTER × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name FRDD_ECOLI
Isoform —
PDB entities 4
Chains and sequence ranges Author chain D; PDBConstruct 1–119; UniProt 1–119 Author chain P; PDBConstruct 1–119; UniProt 1–119

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id3cir
Deposition date deposition_date2008-03-11
Structure title titleE. coli Quinol fumarate reductase FrdA T234A mutation
Keywords keywordselectron transport, Tricarboxylic acid cycle, Oxidoreductase; OXIDOREDUCTASE
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

3cir__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

3cir__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

3cir__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)32.35 Å
Rg (electron density)33.02 Å
Total Rg33.09 Å
Atom count8084
Residues1033
Excluded volume144260 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 3cir__assembly_1__model_1 tetrameric (4) Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 3cir__assembly_2__model_1 tetrameric (4) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (8)

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6. Fold Classification (SCOP + CATH) 29 domains

SCOP 2.08 (14 domains)

Domain ID domain_idd3cira1
Class classa — All alpha proteins
Fold Fold folda.7 — Spectrin repeat-like
Superfamily Superfamily superfamilya.7.3 — Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
Family Family familya.7.3.1 — Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
Domain ID domain_idd3cira2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.3 — FAD/NAD(P)-binding domain
Superfamily Superfamily superfamilyc.3.1 — FAD/NAD(P)-binding domain
Family Family familyc.3.1.4 — Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
Domain ID domain_idd3cira3
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.168 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Superfamily Superfamily superfamilyd.168.1 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Family Family familyd.168.1.1 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Domain ID domain_idd3cirb1
Class classa — All alpha proteins
Fold Fold folda.1 — Globin-like
Superfamily Superfamily superfamilya.1.2 — alpha-helical ferredoxin
Family Family familya.1.2.1 — Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
Domain ID domain_idd3cirb2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.15 — beta-Grasp (ubiquitin-like)
Superfamily Superfamily superfamilyd.15.4 — 2Fe-2S ferredoxin-like
Family Family familyd.15.4.2 — 2Fe-2S ferredoxin domains from multidomain proteins
Domain ID domain_idd3circ1
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.21 — Heme-binding four-helical bundle
Superfamily Superfamily superfamilyf.21.2 — Fumarate reductase respiratory complex transmembrane subunits
Family Family familyf.21.2.2 — Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
Domain ID domain_idd3cird1
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.21 — Heme-binding four-helical bundle
Superfamily Superfamily superfamilyf.21.2 — Fumarate reductase respiratory complex transmembrane subunits
Family Family familyf.21.2.2 — Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
Domain ID domain_idd3cirm1
Class classa — All alpha proteins
Fold Fold folda.7 — Spectrin repeat-like
Superfamily Superfamily superfamilya.7.3 — Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
Family Family familya.7.3.1 — Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
Domain ID domain_idd3cirm2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.3 — FAD/NAD(P)-binding domain
Superfamily Superfamily superfamilyc.3.1 — FAD/NAD(P)-binding domain
Family Family familyc.3.1.4 — Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
Domain ID domain_idd3cirm3
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.168 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Superfamily Superfamily superfamilyd.168.1 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Family Family familyd.168.1.1 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Domain ID domain_idd3cirn1
Class classa — All alpha proteins
Fold Fold folda.1 — Globin-like
Superfamily Superfamily superfamilya.1.2 — alpha-helical ferredoxin
Family Family familya.1.2.1 — Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
Domain ID domain_idd3cirn2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.15 — beta-Grasp (ubiquitin-like)
Superfamily Superfamily superfamilyd.15.4 — 2Fe-2S ferredoxin-like
Family Family familyd.15.4.2 — 2Fe-2S ferredoxin domains from multidomain proteins
Domain ID domain_idd3ciro1
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.21 — Heme-binding four-helical bundle
Superfamily Superfamily superfamilyf.21.2 — Fumarate reductase respiratory complex transmembrane subunits
Family Family familyf.21.2.2 — Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
Domain ID domain_idd3cirp1
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.21 — Heme-binding four-helical bundle
Superfamily Superfamily superfamilyf.21.2 — Fumarate reductase respiratory complex transmembrane subunits
Family Family familyf.21.2.2 — Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)

CATH v4.4 (15 domains)

Domain ID domain_id3cirA01
Class class3 — Alpha Beta
Architecture architecture50 — 3-Layer(bba) Sandwich
Topology topology50 — FAD/NAD(P)-binding domain
Homologous superfamily homologous superfamily60 — FAD/NAD(P)-binding domain
Domain ID domain_id3cirA02
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology700 — Flavocytochrome C3; Chain A, domain 1
Homologous superfamily homologous superfamily10 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Domain ID domain_id3cirA03
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1
Homologous superfamily homologous superfamily100 — Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain
Domain ID domain_id3cirA04
Class class4 — Few Secondary Structures
Architecture architecture10 — Irregular
Topology topology80 — Rhinovirus 14, subunit 4
Homologous superfamily homologous superfamily40 — succinate dehydrogenase protein domain
Domain ID domain_id3cirB01
Class class3 — Alpha Beta
Architecture architecture10 — Roll
Topology topology20 — Ubiquitin-like (UB roll)
Homologous superfamily homologous superfamily30 — Beta-grasp domain
Domain ID domain_id3cirB02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology1060 — Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2
Homologous superfamily homologous superfamily10 — Alpha-helical ferredoxin
Domain ID domain_id3cirC00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1300 — 3 helical TM bundles of succinate and fumarate reductases
Homologous superfamily homologous superfamily10 — Fumarate reductase/succinate dehydrogenase, transmembrane subunit
Domain ID domain_id3cirD00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1300 — 3 helical TM bundles of succinate and fumarate reductases
Homologous superfamily homologous superfamily10 — Fumarate reductase/succinate dehydrogenase, transmembrane subunit
Domain ID domain_id3cirM01
Class class3 — Alpha Beta
Architecture architecture50 — 3-Layer(bba) Sandwich
Topology topology50 — FAD/NAD(P)-binding domain
Homologous superfamily homologous superfamily60 — FAD/NAD(P)-binding domain
Domain ID domain_id3cirM03
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1
Homologous superfamily homologous superfamily100 — Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain
Domain ID domain_id3cirM04
Class class4 — Few Secondary Structures
Architecture architecture10 — Irregular
Topology topology80 — Rhinovirus 14, subunit 4
Homologous superfamily homologous superfamily40 — succinate dehydrogenase protein domain
Domain ID domain_id3cirN01
Class class3 — Alpha Beta
Architecture architecture10 — Roll
Topology topology20 — Ubiquitin-like (UB roll)
Homologous superfamily homologous superfamily30 — Beta-grasp domain
Domain ID domain_id3cirN02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology1060 — Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2
Homologous superfamily homologous superfamily10 — Alpha-helical ferredoxin
Domain ID domain_id3cirO00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1300 — 3 helical TM bundles of succinate and fumarate reductases
Homologous superfamily homologous superfamily10 — Fumarate reductase/succinate dehydrogenase, transmembrane subunit
Domain ID domain_id3cirP00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1300 — 3 helical TM bundles of succinate and fumarate reductases
Homologous superfamily homologous superfamily10 — Fumarate reductase/succinate dehydrogenase, transmembrane subunit
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7. Citations (1)