← Back to search
3dph

HIV-1 capsid C-terminal domain mutant (L211S)

Method: X-RAY DIFFRACTION
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

HIV-1 CAPSID PROTEIN

Human immunodeficiency virus 1

UniProt Q72497

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 2 water × 2 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
1l6n 2jmg 2lf4 2nv3

4 assemblies

Homodimer
3dph 3ds2 3ds5 3ds5 3dtj 3dtj

6 assemblies

Homotetramer

None

Other homooligomers
3p05 3p0a 3p0a 3p0a 3p0a 7r7p 7r7q

7 assemblies

Heteromeric or nucleic-acid complex
1m9c 1m9c 1m9d 1m9d 1m9e 1m9e 1m9f 1m9f 1m9x 1m9x 1m9x 1m9x

30 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name Q72497_9HIV1
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 1–86； UniProt 278–363 Author chain B； PDBConstruct 1–86； UniProt 278–363

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id3dph
Deposition date deposition_date2008-07-08
Structure title titleHIV-1 capsid C-terminal domain mutant (L211S)
Keywords keywordsHIV, CAPSID, MUTANT, ASSEMBLY, POLYPROTEIN, VIRAL PROTEIN, Mainly Alpha, Capsid maturation, Capsid protein; VIRAL PROTEIN
Experimental Method methodX-RAY DIFFRACTION
▼

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

3dph__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

3dph__assembly_1__model_1 | I(q)

10-2 10-1 105 106 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

3dph__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）18.77 Å
Rg (electron density)17.90 Å
Total Rg18.75 Å
Atom count1218
Residues158
Excluded volume21608 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 3dph__assembly_1__model_1 dimeric （2） Success 4.1.3-1-20251215 (887e7ef) View Download
▶

4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (2)

▼

6. Fold Classification (SCOP + CATH) 4 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd3dpha_
Class classa — All alpha proteins
Fold Fold folda.28 — Acyl carrier protein-like
Superfamily Superfamily superfamilya.28.3 — Retrovirus capsid dimerization domain-like
Family Family familya.28.3.1 — Retrovirus capsid protein C-terminal domain
Domain ID domain_idd3dphb_
Class classa — All alpha proteins
Fold Fold folda.28 — Acyl carrier protein-like
Superfamily Superfamily superfamilya.28.3 — Retrovirus capsid dimerization domain-like
Family Family familya.28.3.1 — Retrovirus capsid protein C-terminal domain

CATH v4.4 (2 domains)

Domain ID domain_id3dphA00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology1200 — Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A
Homologous superfamily homologous superfamily30 — Retrovirus capsid C-terminal domain
Domain ID domain_id3dphB00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology1200 — Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A
Homologous superfamily homologous superfamily30 — Retrovirus capsid C-terminal domain
▶

7. Citations (2)