Pyrococcus furiosus
| Assembly | 物理组成 | 蛋白状态 | 分子拷贝数 | 共同组分 | 数据核对 |
|---|---|---|---|---|---|
| 1 | 蛋白–DNA | 同源多聚体 | 蛋白 2 DNA 1 | ;DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DAP*DCP*DAP*DAP*DGP*DCP*DTP*DTP*DTP*DTP*DGP*DCP*DTP*DTP*DGP*DTP*DGP*DGP*DAP*DTP*DA)-3') ; × 1 MANGANESE (II) ION × 4 water × 3 | 与全部聚合物一致 |
| UniProt名称 | MRE11_PYRFU |
| Isoform | — |
| PDB实体 | 1 |
| 链与序列区间 | 作者链 A； PDB构建体 1–343； UniProt 1–343 作者链 B； PDB构建体 1–343； UniProt 1–343 |
页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中；数据库内部编号、导入时间和 assembly 操作表达式仅用于维护，因此不在读者页面展示。
| 条目编号 entry_id | 3dsd |
| 沉积日期 deposition_date | 2008-07-11 |
| 结构标题 title | Crystal structure of P. furiosus Mre11-H85S bound to a branched DNA and manganese |
| 关键词 keywords | ;Protein-DNA complex, Double Helix, Nuclease, DNA damage, DNA repair, Endonuclease, Exonuclease, Hydrolase, Manganese, Metal-binding, Hydrolase-DNA COMPLEX ;; Hydrolase/DNA |
| 实验方法 method | X-RAY DIFFRACTION |
页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。
Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)
| Rg（Guinier） | 30.43 Å |
| Rg（电子密度） | 30.25 Å |
| 总 Rg | 30.85 Å |
| 原子数 | 5977 |
| 残基数 | 689 |
| 排除体积 | 105640 ų |
| 最大 q | 0.500 Å⁻¹ |
| 结构域编号 domain_id | d3dsda_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.159 — Metallo-dependent phosphatases |
| 超家族 Superfamily superfamily | d.159.1 — Metallo-dependent phosphatases |
| 家族 Family family | d.159.1.4 — DNA double-strand break repair nuclease |
| 结构域编号 domain_id | d3dsdb_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.159 — Metallo-dependent phosphatases |
| 超家族 Superfamily superfamily | d.159.1 — Metallo-dependent phosphatases |
| 家族 Family family | d.159.1.4 — DNA double-strand break repair nuclease |
| 结构域编号 domain_id | 3dsdA01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 60 — 4-Layer Sandwich |
| 拓扑 Topology topology | 21 — Purple Acid Phosphatase; chain A, domain 2 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Metallo-dependent phosphatases |
| 结构域编号 domain_id | 3dsdA02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 110 — Translation Initiation Factor IF3 |
| 同源超家族 H-superfamily homologous superfamily | 80 — DNA double-strand break repair nuclease |
| 结构域编号 domain_id | 3dsdB01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 60 — 4-Layer Sandwich |
| 拓扑 Topology topology | 21 — Purple Acid Phosphatase; chain A, domain 2 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Metallo-dependent phosphatases |
| 结构域编号 domain_id | 3dsdB02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 110 — Translation Initiation Factor IF3 |
| 同源超家族 H-superfamily homologous superfamily | 80 — DNA double-strand break repair nuclease |