3dwl

Crystal Structure of Fission Yeast Arp2/3 Complex Lacking the Arp2 Subunit

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

Actin-related protein 3

物种未注明

UniProt P32390

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 6 Actin-related protein 2/3 complex subunit 1 × 1 (P78774) Actin-related protein 2/3 complex subunit 2 × 1 (O14241) Actin-related protein 2/3 complex subunit 3 × 1 (Q9Y7J4) Actin-related protein 2/3 complex subunit 4 × 1 (Q92352) Actin-related protein 2/3 complex subunit 5 × 1 (Q10316) ADENOSINE-5'-TRIPHOSPHATE × 1 与蛋白数一致
2 蛋白异源复合物 异源复合物 蛋白 6 Actin-related protein 2/3 complex subunit 1 × 1 (P78774) Actin-related protein 2/3 complex subunit 2 × 1 (O14241) Actin-related protein 2/3 complex subunit 3 × 1 (Q9Y7J4) Actin-related protein 2/3 complex subunit 4 × 1 (Q92352) Actin-related protein 2/3 complex subunit 5 × 1 (Q10316) ADENOSINE-5'-TRIPHOSPHATE × 1 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 ARP3_SCHPO
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–427; UniProt 1–427 作者链 B; PDB构建体 1–427; UniProt 1–427

Actin-related protein 2/3 complex subunit 1

物种未注明

UniProt P78774

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 6 Actin-related protein 3 × 1 (P32390) Actin-related protein 2/3 complex subunit 2 × 1 (O14241) Actin-related protein 2/3 complex subunit 3 × 1 (Q9Y7J4) Actin-related protein 2/3 complex subunit 4 × 1 (Q92352) Actin-related protein 2/3 complex subunit 5 × 1 (Q10316) ADENOSINE-5'-TRIPHOSPHATE × 1 与蛋白数一致
2 蛋白异源复合物 异源复合物 蛋白 6 Actin-related protein 3 × 1 (P32390) Actin-related protein 2/3 complex subunit 2 × 1 (O14241) Actin-related protein 2/3 complex subunit 3 × 1 (Q9Y7J4) Actin-related protein 2/3 complex subunit 4 × 1 (Q92352) Actin-related protein 2/3 complex subunit 5 × 1 (Q10316) ADENOSINE-5'-TRIPHOSPHATE × 1 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 ARPC1_SCHPO
Isoform —
PDB实体 2
链与序列区间 作者链 C; PDB构建体 1–377; UniProt 1–377 作者链 H; PDB构建体 1–377; UniProt 1–377

Actin-related protein 2/3 complex subunit 2

物种未注明

UniProt O14241

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 6 Actin-related protein 3 × 1 (P32390) Actin-related protein 2/3 complex subunit 1 × 1 (P78774) Actin-related protein 2/3 complex subunit 3 × 1 (Q9Y7J4) Actin-related protein 2/3 complex subunit 4 × 1 (Q92352) Actin-related protein 2/3 complex subunit 5 × 1 (Q10316) ADENOSINE-5'-TRIPHOSPHATE × 1 与蛋白数一致
2 蛋白异源复合物 异源复合物 蛋白 6 Actin-related protein 3 × 1 (P32390) Actin-related protein 2/3 complex subunit 1 × 1 (P78774) Actin-related protein 2/3 complex subunit 3 × 1 (Q9Y7J4) Actin-related protein 2/3 complex subunit 4 × 1 (Q92352) Actin-related protein 2/3 complex subunit 5 × 1 (Q10316) ADENOSINE-5'-TRIPHOSPHATE × 1 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 ARPC2_SCHPO
Isoform —
PDB实体 3
链与序列区间 作者链 D; PDB构建体 1–317; UniProt 1–317 作者链 I; PDB构建体 1–317; UniProt 1–317

Actin-related protein 2/3 complex subunit 3

物种未注明

UniProt Q9Y7J4

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 6 Actin-related protein 3 × 1 (P32390) Actin-related protein 2/3 complex subunit 1 × 1 (P78774) Actin-related protein 2/3 complex subunit 2 × 1 (O14241) Actin-related protein 2/3 complex subunit 4 × 1 (Q92352) Actin-related protein 2/3 complex subunit 5 × 1 (Q10316) ADENOSINE-5'-TRIPHOSPHATE × 1 与蛋白数一致
2 蛋白异源复合物 异源复合物 蛋白 6 Actin-related protein 3 × 1 (P32390) Actin-related protein 2/3 complex subunit 1 × 1 (P78774) Actin-related protein 2/3 complex subunit 2 × 1 (O14241) Actin-related protein 2/3 complex subunit 4 × 1 (Q92352) Actin-related protein 2/3 complex subunit 5 × 1 (Q10316) ADENOSINE-5'-TRIPHOSPHATE × 1 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 ARPC3_SCHPO
Isoform —
PDB实体 4
链与序列区间 作者链 E; PDB构建体 1–174; UniProt 1–174 作者链 J; PDB构建体 1–174; UniProt 1–174

Actin-related protein 2/3 complex subunit 4

物种未注明

UniProt Q92352

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 6 Actin-related protein 3 × 1 (P32390) Actin-related protein 2/3 complex subunit 1 × 1 (P78774) Actin-related protein 2/3 complex subunit 2 × 1 (O14241) Actin-related protein 2/3 complex subunit 3 × 1 (Q9Y7J4) Actin-related protein 2/3 complex subunit 5 × 1 (Q10316) ADENOSINE-5'-TRIPHOSPHATE × 1 与蛋白数一致
2 蛋白异源复合物 异源复合物 蛋白 6 Actin-related protein 3 × 1 (P32390) Actin-related protein 2/3 complex subunit 1 × 1 (P78774) Actin-related protein 2/3 complex subunit 2 × 1 (O14241) Actin-related protein 2/3 complex subunit 3 × 1 (Q9Y7J4) Actin-related protein 2/3 complex subunit 5 × 1 (Q10316) ADENOSINE-5'-TRIPHOSPHATE × 1 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 ARPC4_SCHPO
Isoform —
PDB实体 5
链与序列区间 作者链 F; PDB构建体 1–168; UniProt 1–168 作者链 K; PDB构建体 1–168; UniProt 1–168

Actin-related protein 2/3 complex subunit 5

物种未注明

UniProt Q10316

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 6 Actin-related protein 3 × 1 (P32390) Actin-related protein 2/3 complex subunit 1 × 1 (P78774) Actin-related protein 2/3 complex subunit 2 × 1 (O14241) Actin-related protein 2/3 complex subunit 3 × 1 (Q9Y7J4) Actin-related protein 2/3 complex subunit 4 × 1 (Q92352) ADENOSINE-5'-TRIPHOSPHATE × 1 与蛋白数一致
2 蛋白异源复合物 异源复合物 蛋白 6 Actin-related protein 3 × 1 (P32390) Actin-related protein 2/3 complex subunit 1 × 1 (P78774) Actin-related protein 2/3 complex subunit 2 × 1 (O14241) Actin-related protein 2/3 complex subunit 3 × 1 (Q9Y7J4) Actin-related protein 2/3 complex subunit 4 × 1 (Q92352) ADENOSINE-5'-TRIPHOSPHATE × 1 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 ARPC5_SCHPO
Isoform —
PDB实体 6
链与序列区间 作者链 G; PDB构建体 1–152; UniProt 1–152 作者链 L; PDB构建体 1–152; UniProt 1–152

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id3dwl
沉积日期 deposition_date2008-07-22
结构标题 titleCrystal Structure of Fission Yeast Arp2/3 Complex Lacking the Arp2 Subunit
关键词 keywordsPROPELLOR, Actin-binding, ATP-binding, Cytoskeleton, Nucleotide-binding, WD repeat, STRUCTURAL PROTEIN; STRUCTURAL PROTEIN
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

3dwl__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

3dwl__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

3dwl__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)42.20 Å
Rg(电子密度)41.71 Å
总 Rg41.82 Å
原子数9347
残基数1306
排除体积163370 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 3dwl__assembly_1__model_1 hexameric (6) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
2 1 3dwl__assembly_2__model_1 hexameric (6) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (7)

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6. 折叠分类 (SCOP + CATH) 18 domains

CATH v4.4 (18 domains)

结构域编号 domain_id3dwlA01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology420 — Nucleotidyltransferase; domain 5
同源超家族 H-superfamily homologous superfamily40 — ATPase, nucleotide binding domain
结构域编号 domain_id3dwlA02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology420 — Nucleotidyltransferase; domain 5
同源超家族 H-superfamily homologous superfamily40 — ATPase, nucleotide binding domain
结构域编号 domain_id3dwlA03
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology640 — Actin; Chain A, domain 4
同源超家族 H-superfamily homologous superfamily10 — ATPase, substrate binding domain, subdomain 4
结构域编号 domain_id3dwlB01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology420 — Nucleotidyltransferase; domain 5
同源超家族 H-superfamily homologous superfamily40 — ATPase, nucleotide binding domain
结构域编号 domain_id3dwlB02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology420 — Nucleotidyltransferase; domain 5
同源超家族 H-superfamily homologous superfamily40 — ATPase, nucleotide binding domain
结构域编号 domain_id3dwlB03
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology640 — Actin; Chain A, domain 4
同源超家族 H-superfamily homologous superfamily10 — ATPase, substrate binding domain, subdomain 4
结构域编号 domain_id3dwlC00
类 Class class2 — Mainly Beta
架构 Architecture architecture130 — 7 Propeller
拓扑 Topology topology10 — Methylamine Dehydrogenase; Chain H
同源超家族 H-superfamily homologous superfamily10 — YVTN repeat-like/Quinoprotein amine dehydrogenase
结构域编号 domain_id3dwlD01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1460 — Yope Regulator; Chain: A,
同源超家族 H-superfamily homologous superfamily20 —
结构域编号 domain_id3dwlD02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1460 — Yope Regulator; Chain: A,
同源超家族 H-superfamily homologous superfamily20 —
结构域编号 domain_id3dwlE00
类 Class class6 — Special
架构 Architecture architecture10 — Helix non-globular
拓扑 Topology topology20 — Arc Repressor Mutant, subunit A
同源超家族 H-superfamily homologous superfamily160 —
结构域编号 domain_id3dwlF00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1460 — Yope Regulator; Chain: A,
同源超家族 H-superfamily homologous superfamily20 —
结构域编号 domain_id3dwlG00
类 Class class1 — Mainly Alpha
架构 Architecture architecture25 — Alpha Horseshoe
拓扑 Topology topology40 — Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
同源超家族 H-superfamily homologous superfamily190 — Actin-related protein 2/3 complex subunit 5
结构域编号 domain_id3dwlH00
类 Class class2 — Mainly Beta
架构 Architecture architecture130 — 7 Propeller
拓扑 Topology topology10 — Methylamine Dehydrogenase; Chain H
同源超家族 H-superfamily homologous superfamily10 — YVTN repeat-like/Quinoprotein amine dehydrogenase
结构域编号 domain_id3dwlI01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1460 — Yope Regulator; Chain: A,
同源超家族 H-superfamily homologous superfamily20 —
结构域编号 domain_id3dwlI02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1460 — Yope Regulator; Chain: A,
同源超家族 H-superfamily homologous superfamily20 —
结构域编号 domain_id3dwlJ00
类 Class class6 — Special
架构 Architecture architecture10 — Helix non-globular
拓扑 Topology topology20 — Arc Repressor Mutant, subunit A
同源超家族 H-superfamily homologous superfamily160 —
结构域编号 domain_id3dwlK00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1460 — Yope Regulator; Chain: A,
同源超家族 H-superfamily homologous superfamily20 —
结构域编号 domain_id3dwlL00
类 Class class1 — Mainly Alpha
架构 Architecture architecture25 — Alpha Horseshoe
拓扑 Topology topology40 — Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
同源超家族 H-superfamily homologous superfamily190 — Actin-related protein 2/3 complex subunit 5
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7. 引用文献 (1)