6w17

Structure of Dip1-activated Arp2/3 complex with nucleated actin filament

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Actin-related protein 3

OrganismNot specified

UniProt P32390

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 17 Actin-related protein 2 × 1 (Q9UUJ1) Actin-related protein 2/3 complex subunit 1 × 1 (P78774) Actin-related protein 2/3 complex subunit 2 × 1 (O14241) Actin-related protein 2/3 complex subunit 3 × 1 (Q9Y7J4) Actin-related protein 2/3 complex subunit 4 × 1 (Q92352) Actin-related protein 2/3 complex subunit 5 × 1 (Q10316) Protein dip1 × 1 (O74771) Actin, alpha skeletal muscle × 4 (P68135) Phalloidin × 5 MAGNESIUM ION × 6 ADENOSINE-5'-TRIPHOSPHATE × 2 ADENOSINE-5'-DIPHOSPHATE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ARP3_SCHPO
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–427; UniProt 1–427

Actin-related protein 2

OrganismNot specified

UniProt Q9UUJ1

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 17 Actin-related protein 3 × 1 (P32390) Actin-related protein 2/3 complex subunit 1 × 1 (P78774) Actin-related protein 2/3 complex subunit 2 × 1 (O14241) Actin-related protein 2/3 complex subunit 3 × 1 (Q9Y7J4) Actin-related protein 2/3 complex subunit 4 × 1 (Q92352) Actin-related protein 2/3 complex subunit 5 × 1 (Q10316) Protein dip1 × 1 (O74771) Actin, alpha skeletal muscle × 4 (P68135) Phalloidin × 5 MAGNESIUM ION × 6 ADENOSINE-5'-TRIPHOSPHATE × 2 ADENOSINE-5'-DIPHOSPHATE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ARP2_SCHPO
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–390; UniProt 1–390

Actin-related protein 2/3 complex subunit 1

OrganismNot specified

UniProt P78774

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 17 Actin-related protein 3 × 1 (P32390) Actin-related protein 2 × 1 (Q9UUJ1) Actin-related protein 2/3 complex subunit 2 × 1 (O14241) Actin-related protein 2/3 complex subunit 3 × 1 (Q9Y7J4) Actin-related protein 2/3 complex subunit 4 × 1 (Q92352) Actin-related protein 2/3 complex subunit 5 × 1 (Q10316) Protein dip1 × 1 (O74771) Actin, alpha skeletal muscle × 4 (P68135) Phalloidin × 5 MAGNESIUM ION × 6 ADENOSINE-5'-TRIPHOSPHATE × 2 ADENOSINE-5'-DIPHOSPHATE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ARPC1_SCHPO
Isoform —
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–377; UniProt 1–377

Actin-related protein 2/3 complex subunit 2

OrganismNot specified

UniProt O14241

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 17 Actin-related protein 3 × 1 (P32390) Actin-related protein 2 × 1 (Q9UUJ1) Actin-related protein 2/3 complex subunit 1 × 1 (P78774) Actin-related protein 2/3 complex subunit 3 × 1 (Q9Y7J4) Actin-related protein 2/3 complex subunit 4 × 1 (Q92352) Actin-related protein 2/3 complex subunit 5 × 1 (Q10316) Protein dip1 × 1 (O74771) Actin, alpha skeletal muscle × 4 (P68135) Phalloidin × 5 MAGNESIUM ION × 6 ADENOSINE-5'-TRIPHOSPHATE × 2 ADENOSINE-5'-DIPHOSPHATE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ARPC2_SCHPO
Isoform —
PDB entities 4
Chains and sequence ranges Author chain D; PDBConstruct 1–317; UniProt 1–317

Actin-related protein 2/3 complex subunit 3

OrganismNot specified

UniProt Q9Y7J4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 17 Actin-related protein 3 × 1 (P32390) Actin-related protein 2 × 1 (Q9UUJ1) Actin-related protein 2/3 complex subunit 1 × 1 (P78774) Actin-related protein 2/3 complex subunit 2 × 1 (O14241) Actin-related protein 2/3 complex subunit 4 × 1 (Q92352) Actin-related protein 2/3 complex subunit 5 × 1 (Q10316) Protein dip1 × 1 (O74771) Actin, alpha skeletal muscle × 4 (P68135) Phalloidin × 5 MAGNESIUM ION × 6 ADENOSINE-5'-TRIPHOSPHATE × 2 ADENOSINE-5'-DIPHOSPHATE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ARPC3_SCHPO
Isoform —
PDB entities 5
Chains and sequence ranges Author chain E; PDBConstruct 1–174; UniProt 1–174

Actin-related protein 2/3 complex subunit 4

OrganismNot specified

UniProt Q92352

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 17 Actin-related protein 3 × 1 (P32390) Actin-related protein 2 × 1 (Q9UUJ1) Actin-related protein 2/3 complex subunit 1 × 1 (P78774) Actin-related protein 2/3 complex subunit 2 × 1 (O14241) Actin-related protein 2/3 complex subunit 3 × 1 (Q9Y7J4) Actin-related protein 2/3 complex subunit 5 × 1 (Q10316) Protein dip1 × 1 (O74771) Actin, alpha skeletal muscle × 4 (P68135) Phalloidin × 5 MAGNESIUM ION × 6 ADENOSINE-5'-TRIPHOSPHATE × 2 ADENOSINE-5'-DIPHOSPHATE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ARPC4_SCHPO
Isoform —
PDB entities 6
Chains and sequence ranges Author chain F; PDBConstruct 1–168; UniProt 1–168

Actin-related protein 2/3 complex subunit 5

OrganismNot specified

UniProt Q10316

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 17 Actin-related protein 3 × 1 (P32390) Actin-related protein 2 × 1 (Q9UUJ1) Actin-related protein 2/3 complex subunit 1 × 1 (P78774) Actin-related protein 2/3 complex subunit 2 × 1 (O14241) Actin-related protein 2/3 complex subunit 3 × 1 (Q9Y7J4) Actin-related protein 2/3 complex subunit 4 × 1 (Q92352) Protein dip1 × 1 (O74771) Actin, alpha skeletal muscle × 4 (P68135) Phalloidin × 5 MAGNESIUM ION × 6 ADENOSINE-5'-TRIPHOSPHATE × 2 ADENOSINE-5'-DIPHOSPHATE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ARPC5_SCHPO
Isoform —
PDB entities 7
Chains and sequence ranges Author chain G; PDBConstruct 1–152; UniProt 1–152

Protein dip1

Schizosaccharomyces pombe (strain 972 / ATCC 24843)

UniProt O74771

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 17 Actin-related protein 3 × 1 (P32390) Actin-related protein 2 × 1 (Q9UUJ1) Actin-related protein 2/3 complex subunit 1 × 1 (P78774) Actin-related protein 2/3 complex subunit 2 × 1 (O14241) Actin-related protein 2/3 complex subunit 3 × 1 (Q9Y7J4) Actin-related protein 2/3 complex subunit 4 × 1 (Q92352) Actin-related protein 2/3 complex subunit 5 × 1 (Q10316) Actin, alpha skeletal muscle × 4 (P68135) Phalloidin × 5 MAGNESIUM ION × 6 ADENOSINE-5'-TRIPHOSPHATE × 2 ADENOSINE-5'-DIPHOSPHATE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DIP1_SCHPO
Isoform —
PDB entities 8
Chains and sequence ranges Author chain H; PDBConstruct 1–374; UniProt 1–374

Actin, alpha skeletal muscle

OrganismNot specified

UniProt P68135

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 17 Actin-related protein 3 × 1 (P32390) Actin-related protein 2 × 1 (Q9UUJ1) Actin-related protein 2/3 complex subunit 1 × 1 (P78774) Actin-related protein 2/3 complex subunit 2 × 1 (O14241) Actin-related protein 2/3 complex subunit 3 × 1 (Q9Y7J4) Actin-related protein 2/3 complex subunit 4 × 1 (Q92352) Actin-related protein 2/3 complex subunit 5 × 1 (Q10316) Protein dip1 × 1 (O74771) Phalloidin × 5 MAGNESIUM ION × 6 ADENOSINE-5'-TRIPHOSPHATE × 2 ADENOSINE-5'-DIPHOSPHATE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ACTS_RABIT
Isoform —
PDB entities 9
Chains and sequence ranges Author chain I; PDBConstruct 1–377; UniProt 1–377 Author chain J; PDBConstruct 1–377; UniProt 1–377 Author chain K; PDBConstruct 1–377; UniProt 1–377 Author chain L; PDBConstruct 1–377; UniProt 1–377

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6w17
Deposition date deposition_date2020-03-03
Structure title titleStructure of Dip1-activated Arp2/3 complex with nucleated actin filament
Keywords keywordsArp2/3, actin, Dip1, cytoskeletal protein, actin regulator, STRUCTURAL PROTEIN; STRUCTURAL PROTEIN
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6w17__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6w17__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6w17__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)60.55 Å
Rg (electron density)61.01 Å
Total Rg60.92 Å
Atom count27396
Residues3499
Excluded volume485760 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6w17__assembly_1__model_1 heptadecameric (17) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (13)

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6. Fold Classification (SCOP + CATH) 2 domains

CATH v4.4 (2 domains)

Domain ID domain_id6w17A01
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology640 — Actin; Chain A, domain 4
Homologous superfamily homologous superfamily10 — ATPase, substrate binding domain, subdomain 4
Domain ID domain_id6w17B01
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology640 — Actin; Chain A, domain 4
Homologous superfamily homologous superfamily10 — ATPase, substrate binding domain, subdomain 4
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7. Citations (1)