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3j9l

Structure of Dark apoptosome from Drosophila melanogaster

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Apaf-1 related killer DARK

OrganismNot specified

UniProt Q7KLI1

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 16 ;2'-DEOXYADENOSINE 5'-TRIPHOSPHATE ; × 15 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
8y6p

1 assemblies

Homodimer

None

Homotetramer

None

Other homooligomers
3j9l 4v4l 5jul

3 assemblies

Heteromeric or nucleic-acid complex
3j9k 8y6q

2 assemblies

View Construct and Data Evidence
UniProt name Q7KLI1_DROME
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 1–583； UniProt 1–583 Author chain C； PDBConstruct 1–583； UniProt 1–583 Author chain D； PDBConstruct 1–583； UniProt 1–583 Author chain E； PDBConstruct 1–583； UniProt 1–583 Author chain F； PDBConstruct 1–583； UniProt 1–583 Author chain G； PDBConstruct 1–583； UniProt 1–583 Author chain H； PDBConstruct 1–583； UniProt 1–583 Author chain I； PDBConstruct 1–583； UniProt 1–583 Author chain J； PDBConstruct 1–583； UniProt 1–583 Author chain K； PDBConstruct 1–583； UniProt 1–583 Author chain L； PDBConstruct 1–583； UniProt 1–583 Author chain M； PDBConstruct 1–583； UniProt 1–583 Author chain N； PDBConstruct 1–583； UniProt 1–583 Author chain O； PDBConstruct 1–583； UniProt 1–583 Author chain P； PDBConstruct 1–583； UniProt 1–583 Author chain Q； PDBConstruct 1–583； UniProt 1–583

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id3j9l
Deposition date deposition_date2015-02-04
Structure title titleStructure of Dark apoptosome from Drosophila melanogaster
Keywords keywordsprogrammed cell death, APOPTOSIS; APOPTOSIS
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

3j9l__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

3j9l__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

3j9l__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）96.33 Å
Rg (electron density)93.48 Å
Total Rg92.46 Å
Atom count112951
Residues16993
Excluded volume1958000 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 3j9l__assembly_1__model_1 hexadecameric （16） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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7. Citations (1)