3jdw

CRYSTAL STRUCTURE AND MECHANISM OF L-ARGININE: GLYCINE AMIDINOTRANSFERASE: A MITOCHONDRIAL ENZYME INVOLVED IN CREATINE BIOSYNTHESIS

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

L-ARGININE\:GLYCINE AMIDINOTRANSFERASE

Homo sapiens

UniProt P50440

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 2 L-ornithine × 2 water × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name GATM_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–423; UniProt 1–423

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id3jdw
Deposition date deposition_date1997-01-24
Structure title titleCRYSTAL STRUCTURE AND MECHANISM OF L-ARGININE: GLYCINE AMIDINOTRANSFERASE: A MITOCHONDRIAL ENZYME INVOLVED IN CREATINE BIOSYNTHESIS
Keywords keywordsTRANSFERASE, CREATINE BIOSYNTHESIS, CATALYTIC TRIAD, REACTION MECHANISM, NOVEL FOLD, FIVEFOLD PSEUDOSYMMETRY; TRANSFERASE
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

3jdw__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

3jdw__assembly_1__model_1 | I(q)

10-2 10-1 105 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

3jdw__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)28.01 Å
Rg (electron density)27.40 Å
Total Rg28.26 Å
Atom count7184
Residues720
Excluded volume105010 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 3jdw__assembly_1__model_1 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (3)

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6. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd3jdwa_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.126 — Pentein, beta/alpha-propeller
Superfamily Superfamily superfamilyd.126.1 — Pentein
Family Family familyd.126.1.2 — Amidinotransferase

CATH v4.4 (1 domains)

Domain ID domain_id3jdwA00
Class class3 — Alpha Beta
Architecture architecture75 — 5-stranded Propeller
Topology topology10 — L-arginine/glycine Amidinotransferase; Chain A
Homologous superfamily homologous superfamily10 — L-arginine/glycine Amidinotransferase; Chain A
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7. Citations (5)