BACILLUS SUBTILIS
| Assembly | Physical composition | Protein state | Molecular copy count | Associated components | Data consistency |
|---|---|---|---|---|---|
| 1 | Protein homooligomer | Homooligomer | Protein 2 | SULFATE ION × 2 water × 2 | Consistent with protein count |
| UniProt name | YKUD_BACSU |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A； PDBConstruct 2–165； UniProt 1–164 |
The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.
| Entry ID entry_id | 4a1k |
| Deposition date deposition_date | 2011-09-15 |
| Structure title title | Ykud L,D-transpeptidase |
| Keywords keywords | TRANSFERASE, PEPTIDOGLYCAN SYNTHESIS; TRANSFERASE |
| Experimental Method method | X-RAY DIFFRACTION |
This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.
Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)
| Rg（Guinier） | 20.84 Å |
| Rg (electron density) | 20.00 Å |
| Total Rg | 20.95 Å |
| Atom count | 2496 |
| Residues | 328 |
| Excluded volume | 44741 ų |
| Maximum q | 0.500 Å⁻¹ |
| Domain ID domain_id | d4a1ka1 |
| Class class | d — Alpha and beta proteins (a+b) |
| Fold Fold fold | d.7 — LysM domain |
| Superfamily Superfamily superfamily | d.7.1 — LysM domain |
| Family Family family | d.7.1.0 — automated matches |
| Domain ID domain_id | d4a1ka2 |
| Class class | b — All beta proteins |
| Fold Fold fold | b.160 — L,D-transpeptidase catalytic domain-like |
| Superfamily Superfamily superfamily | b.160.1 — L,D-transpeptidase catalytic domain-like |
| Family Family family | b.160.1.1 — L,D-transpeptidase catalytic domain-like |
| Domain ID domain_id | d4a1ka3 |
| Class class | l — Artifacts |
| Fold Fold fold | l.1 — Tags |
| Superfamily Superfamily superfamily | l.1.1 — Tags |
| Family Family family | l.1.1.1 — Tags |
| Domain ID domain_id | 4a1kA01 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 10 — Roll |
| Topology topology | 350 — Membrane-bound Lytic Murein Transglycosylase D; Chain A |
| Homologous superfamily homologous superfamily | 10 — LysM domain |
| Domain ID domain_id | 4a1kA02 |
| Class class | 2 — Mainly Beta |
| Architecture architecture | 40 — Beta Barrel |
| Topology topology | 440 — L,D-transpeptidase catalytic domain-like |
| Homologous superfamily homologous superfamily | 10 — L,D-transpeptidase catalytic domain-like |