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1XIP
Crystal Structure of the N-terminal Domain of Nup159
Deposited 2004-09-21
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Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–387(386 aa)
Fragment:N-terminal domain
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Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;292 K;PEG3350, ammonium acetate, sodium acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 292K
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Resolution 2.50 Å
R-free 0.249
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3PBP
Structure of the yeast heterotrimeric Nup82-Nup159-Nup116 nucleoporin complex
Deposited 2010-10-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
1425–1460(36 aa)
Fragment:Tail, UNP residues 1425-1460
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Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.6;298 K;PEG 400, sodium cacodylate, lithium sulfate, 2,5-hexanediol, pH 6.6, VAPOR DIFFUSION, SITTING DROP, temperature 298K
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Resolution 2.60 Å
R-free 0.272
|
|
3PBP
Structure of the yeast heterotrimeric Nup82-Nup159-Nup116 nucleoporin complex
Deposited 2010-10-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain F
1425–1460(36 aa)
Fragment:Tail, UNP residues 1425-1460
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
PGE TRIETHYLENE GLYCOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.6;298 K;PEG 400, sodium cacodylate, lithium sulfate, 2,5-hexanediol, pH 6.6, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 2.60 Å
R-free 0.272
|
|
3PBP
Structure of the yeast heterotrimeric Nup82-Nup159-Nup116 nucleoporin complex
Deposited 2010-10-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain I
1425–1460(36 aa)
Fragment:Tail, UNP residues 1425-1460
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.6;298 K;PEG 400, sodium cacodylate, lithium sulfate, 2,5-hexanediol, pH 6.6, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 2.60 Å
R-free 0.272
|
|
3PBP
Structure of the yeast heterotrimeric Nup82-Nup159-Nup116 nucleoporin complex
Deposited 2010-10-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain L
1425–1460(36 aa)
Fragment:Tail, UNP residues 1425-1460
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.6;298 K;PEG 400, sodium cacodylate, lithium sulfate, 2,5-hexanediol, pH 6.6, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 2.60 Å
R-free 0.272
|
|
3RRM
S. cerevisiae dbp5 l327v bound to nup159, gle1 h337r, ip6 and adp
Deposited 2011-04-29
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Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
2–387(386 aa)
Fragment:unp residues 2-387
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 1
IHP INOSITOL HEXAKISPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291 K;20% PEG 3350, 200 mM KOAc, 20 mM sarcosine, 10 mM HEPES, 100 mM NaCl, 1 mM DTT, 0.5 mM IP6, 10 mM MgCl2, 1 mM ADP, 5% glycerol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 2.90 Å
R-free 0.261
|
|
3TKN
Structure of the Nup82-Nup159-Nup98 heterotrimer
Deposited 2011-08-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain B
1425–1460(36 aa)
Fragment:UNP residues 1425-1460
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;293 K;18.5% PEG3350, 100 mM potassium thiocyanate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 3.40 Å
R-free 0.285
|
|
3TKN
Structure of the Nup82-Nup159-Nup98 heterotrimer
Deposited 2011-08-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain E
1425–1460(36 aa)
Fragment:UNP residues 1425-1460
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;293 K;18.5% PEG3350, 100 mM potassium thiocyanate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 3.40 Å
R-free 0.285
|
|
3TKN
Structure of the Nup82-Nup159-Nup98 heterotrimer
Deposited 2011-08-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain H
1425–1460(36 aa)
Fragment:UNP residues 1425-1460
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;293 K;18.5% PEG3350, 100 mM potassium thiocyanate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 3.40 Å
R-free 0.285
|
|
7N9F
Structure of the in situ yeast NPC
Deposited 2021-06-17
|
Different construct
Different oligomeric state
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 448
PDB declaration: 448-meric
|
Chain w
1–1460(1460 aa)
Chain x
1–1460(1460 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE;A custom-built vitrification device (Max Planck Institute for Biochemistry, Munich)
|
Resolution 37.00 Å
|
|
7N9F
Structure of the in situ yeast NPC
Deposited 2021-06-17
|
Different construct
Different oligomeric state
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 56
PDB declaration: 56-meric
|
Chain w
1–1460(1460 aa)
Chain x
1–1460(1460 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE;A custom-built vitrification device (Max Planck Institute for Biochemistry, Munich)
|
Resolution 37.00 Å
|
|
7N9F
Structure of the in situ yeast NPC
Deposited 2021-06-17
|
Different construct
Different oligomeric state
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 56
PDB declaration: 56-meric
|
Chain w
1–1460(1460 aa)
Chain x
1–1460(1460 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE;A custom-built vitrification device (Max Planck Institute for Biochemistry, Munich)
|
Resolution 37.00 Å
|