Chaperone protein DnaK
Escherichia coli
State in the Current Structure
| Assembly | Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Associated Components | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|
| 1 | Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric（2） Consistent with protein copy count | Chain A； UniProt 389–607 | Fragment：UNP residues 389-607 | apidaecin peptide fragment × 1 SO4 SULFATE ION × 1 | X-RAY DIFFRACTION X-ray crystallization conditions：VAPOR DIFFUSION, HANGING DROP；pH 6；292 K；2.7 M ammonium sulfate, 0.1 M MES, pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 292K | Resolution 1.90 Å R-free 0.259 |
| 2 | Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric（2） Consistent with protein copy count | Chain B； UniProt 389–607 | Fragment：UNP residues 389-607 | apidaecin peptide fragment × 1 SO4 SULFATE ION × 2 | X-RAY DIFFRACTION X-ray crystallization conditions：VAPOR DIFFUSION, HANGING DROP；pH 6；292 K；2.7 M ammonium sulfate, 0.1 M MES, pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 292K | Resolution 1.90 Å R-free 0.259 |
Other States of the Same Protein in the Database
Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.
| Other PDB | Difference from Current Entry 4E81 | Assembly / Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Non-polymers | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|---|
| 1BPR NMR STRUCTURE OF THE SUBSTRATE BINDING DOMAIN OF DNAK, MINIMIZED AVERAGE STRUCTURE Deposited 1998-08-11 | Different construct Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
379–560（182 aa）
Fragment：SUBSTRATE BINDING DOMAIN
|
Not recorded | No recorded non-water small molecule |
SOLUTION NMR
NMR measurement conditions
pH 7；298 K；Ionic strength (raw mmCIF value) 50 mM INORGANIC PHOSPHATE；Pressure 1
NMR sample composition
H2O AND D2O
|
Resolution not provided |
| 1DG4 NMR STRUCTURE OF THE SUBSTRATE BINDING DOMAIN OF DNAK IN THE APO FORM Deposited 1999-11-23 | Different construct Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
393–507（115 aa）
Fragment：SUBSTRATE BINDING DOMAIN
|
Not recorded | No recorded non-water small molecule |
SOLUTION NMR
NMR measurement conditions
pH 6.8；303 K；Ionic strength (raw mmCIF value) 10mM NA PHOSPHATE；Pressure AMBIENT
NMR measurement conditions
pH 6.8；303 K；Ionic strength (raw mmCIF value) 10mM NA PHOSPHATE；Pressure AMBIENT
NMR measurement conditions
pH 6.8；303 K；Ionic strength (raw mmCIF value) 10mM NA PHOSPHATE；Pressure AMBIENT
NMR measurement conditions
pH 6.8；303 K；Ionic strength (raw mmCIF value) 10mM NA PHOSPHATE；Pressure AMBIENT
NMR sample composition
1MM U15N; 10MM PHOSPHATE BUFFER NA
NMR sample composition
1MM U15N,13C; 10MM PHOSPHATE BUFFER NA
NMR sample composition
1MM U15N,13C; 10MM PHOSPHATE BUFFER NA
NMR sample composition
1MM 10% 13C; 10MM PHOSPHATE BUFFER NA
|
Resolution not provided |
| 1DKX THE SUBSTRATE BINDING DOMAIN OF DNAK IN COMPLEX WITH A SUBSTRATE PEPTIDE, DETERMINED FROM TYPE 1 SELENOMETHIONYL CRYSTALS Deposited 1996-06-03 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
388–606（219 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.00 Å R-free 0.288 |
| 1DKX THE SUBSTRATE BINDING DOMAIN OF DNAK IN COMPLEX WITH A SUBSTRATE PEPTIDE, DETERMINED FROM TYPE 1 SELENOMETHIONYL CRYSTALS Deposited 1996-06-03 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 8 PDB declaration: octameric |
Chain A
388–606（219 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.00 Å R-free 0.288 |
| 1DKY THE SUBSTRATE BINDING DOMAIN OF DNAK IN COMPLEX WITH A SUBSTRATE PEPTIDE, DETERMINED FROM TYPE 2 NATIVE CRYSTALS Deposited 1996-06-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
388–606（219 aa）
Fragment：SUBSTRATE BINDING DOMAIN
Chain B
388–606（219 aa）
Fragment：SUBSTRATE BINDING DOMAIN
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.80 Å R-free 0.309 |
| 1DKY THE SUBSTRATE BINDING DOMAIN OF DNAK IN COMPLEX WITH A SUBSTRATE PEPTIDE, DETERMINED FROM TYPE 2 NATIVE CRYSTALS Deposited 1996-06-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 8 PDB declaration: octameric |
Chain A
388–606（219 aa）
Fragment：SUBSTRATE BINDING DOMAIN
Chain B
388–606（219 aa）
Fragment：SUBSTRATE BINDING DOMAIN
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.80 Å R-free 0.309 |
| 1DKY THE SUBSTRATE BINDING DOMAIN OF DNAK IN COMPLEX WITH A SUBSTRATE PEPTIDE, DETERMINED FROM TYPE 2 NATIVE CRYSTALS Deposited 1996-06-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
388–606（219 aa）
Fragment：SUBSTRATE BINDING DOMAIN
Chain B
388–606（219 aa）
Fragment：SUBSTRATE BINDING DOMAIN
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.80 Å R-free 0.309 |
| 1DKZ THE SUBSTRATE BINDING DOMAIN OF DNAK IN COMPLEX WITH A SUBSTRATE PEPTIDE, DETERMINED FROM TYPE 1 NATIVE CRYSTALS Deposited 1996-06-03 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
388–606（219 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.00 Å R-free 0.274 |
| 1DKZ THE SUBSTRATE BINDING DOMAIN OF DNAK IN COMPLEX WITH A SUBSTRATE PEPTIDE, DETERMINED FROM TYPE 1 NATIVE CRYSTALS Deposited 1996-06-03 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 8 PDB declaration: octameric |
Chain A
388–606（219 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.00 Å R-free 0.274 |
| 1Q5L NMR structure of the substrate binding domain of DnaK bound to the peptide NRLLLTG Deposited 2003-08-08 | Different construct Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
392–506（115 aa）
Fragment：substrate binding domain
|
Not recorded | No recorded non-water small molecule |
SOLUTION NMR
NMR measurement conditions
pH 7.4；303 K；Ionic strength (raw mmCIF value) 10 mM sodium phosphate；Pressure ambient
NMR sample composition
0.66 mM DnaK(393-507); 3.3 mM NRLLLTG; 10 mM sodium phosphate buffer, pH 7.4 | 90% H2O/10% D2O
|
Resolution not provided |
| 2BPR NMR STRUCTURE OF THE SUBSTRATE BINDING DOMAIN OF DNAK, 25 STRUCTURES Deposited 1998-08-11 | Different construct Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
379–560（182 aa）
Fragment：SUBSTRATE BINDING DOMAIN
|
Not recorded | No recorded non-water small molecule |
SOLUTION NMR
NMR measurement conditions
pH 7；298 K；Ionic strength (raw mmCIF value) 50 mM INORGANIC PHOSPHATE；Pressure 1
NMR sample composition
H2O AND D2O
|
Resolution not provided |
| 2KHO NMR-RDC / XRAY structure of E. coli HSP70 (DNAK) chaperone (1-605) complexed with ADP and substrate Deposited 2009-04-10 | Different construct Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–605（605 aa）
|
Not recorded | No recorded non-water small molecule |
SOLUTION NMR
NMR measurement conditions
pH 7.2；300 K；Ionic strength (raw mmCIF value) 0.05；Pressure AMBIENT
NMR sample composition
0.2 MM [U-100% 13C U-100% 15N U-80% 2H] HSP70, 10 MM POTASSIUM CHLORIDE, 25 MM TRIS, 10 MM DTT, 5 MM MGCL2, 5 MM ADP, 10 MM POTASSIUM PHOSPHATE, 0.2 MM SODIUM AZIDE, 2 MM NRLLLTG, 90% H2O/ 10% D2O | 90% H2O/10% D2O
|
Resolution not provided |
| 3DPO Crystal structure of the substrate binding domain of E. coli DnaK in complex with a short pyrrhocoricin-derived inhibitor peptide Deposited 2008-07-09 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：Substrate binding domain (UNP residues 389 to 607)
Chain B
389–607（219 aa）
Fragment：Substrate binding domain (UNP residues 389 to 607)
|
Not recorded | SO4 SULFATE ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5；293 K；2.4 M ammonium sulfate, 100 mM citric acid, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.10 Å R-free 0.241 |
| 3DPO Crystal structure of the substrate binding domain of E. coli DnaK in complex with a short pyrrhocoricin-derived inhibitor peptide Deposited 2008-07-09 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：Substrate binding domain (UNP residues 389 to 607)
|
Not recorded | SO4 SULFATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5；293 K；2.4 M ammonium sulfate, 100 mM citric acid, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.10 Å R-free 0.241 |
| 3DPO Crystal structure of the substrate binding domain of E. coli DnaK in complex with a short pyrrhocoricin-derived inhibitor peptide Deposited 2008-07-09 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
389–607（219 aa）
Fragment：Substrate binding domain (UNP residues 389 to 607)
|
Not recorded | SO4 SULFATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5；293 K；2.4 M ammonium sulfate, 100 mM citric acid, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.10 Å R-free 0.241 |
| 3DPP Crystal structure of the substrate binding domain of E. coli DnaK in complex with a long pyrrhocoricin-derived inhibitor peptide (form A) Deposited 2008-07-09 | Different construct Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：substrate binding domain (UNP residues 389 to 607)
|
Not recorded | SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5；293 K；2.4 M ammonium sulfate, 100 mM citric acid , pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.50 Å R-free 0.316 |
| 3DPP Crystal structure of the substrate binding domain of E. coli DnaK in complex with a long pyrrhocoricin-derived inhibitor peptide (form A) Deposited 2008-07-09 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
389–607（219 aa）
Fragment：substrate binding domain (UNP residues 389 to 607)
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5；293 K；2.4 M ammonium sulfate, 100 mM citric acid , pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.50 Å R-free 0.316 |
| 3DPQ Crystal structure of the substrate binding domain of E. coli DnaK in complex with a long pyrrhocoricin-derived inhibitor peptide (form B) Deposited 2008-07-09 | Different construct Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain E
389–601（213 aa）
Fragment：Substrate binding domain (UNP residues 389 to 607)
|
Not recorded | SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5；293 K；2.4 M ammonium sulfate, 100 mM citric acid , pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.60 Å R-free 0.319 |
| 3DPQ Crystal structure of the substrate binding domain of E. coli DnaK in complex with a long pyrrhocoricin-derived inhibitor peptide (form B) Deposited 2008-07-09 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain F
389–601（213 aa）
Fragment：Substrate binding domain (UNP residues 389 to 607)
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5；293 K；2.4 M ammonium sulfate, 100 mM citric acid , pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.60 Å R-free 0.319 |
| 3DPQ Crystal structure of the substrate binding domain of E. coli DnaK in complex with a long pyrrhocoricin-derived inhibitor peptide (form B) Deposited 2008-07-09 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–601（213 aa）
Fragment：Substrate binding domain (UNP residues 389 to 607)
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5；293 K；2.4 M ammonium sulfate, 100 mM citric acid , pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.60 Å R-free 0.319 |
| 3DPQ Crystal structure of the substrate binding domain of E. coli DnaK in complex with a long pyrrhocoricin-derived inhibitor peptide (form B) Deposited 2008-07-09 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
389–601（213 aa）
Fragment：Substrate binding domain (UNP residues 389 to 607)
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5；293 K；2.4 M ammonium sulfate, 100 mM citric acid , pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.60 Å R-free 0.319 |
| 3QNJ Crystal structure of the substrate binding domain of E.coli DnaK in complex with the antimicrobial peptide oncocin Deposited 2011-02-08 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4；292 K；2.4 M ammonium sulfate, 0.1 M citric acid, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 2.28 Å R-free 0.284 |
| 3QNJ Crystal structure of the substrate binding domain of E.coli DnaK in complex with the antimicrobial peptide oncocin Deposited 2011-02-08 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | SO4 SULFATE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4；292 K；2.4 M ammonium sulfate, 0.1 M citric acid, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 2.28 Å R-free 0.284 |
| 3QNJ Crystal structure of the substrate binding domain of E.coli DnaK in complex with the antimicrobial peptide oncocin Deposited 2011-02-08 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
Chain B
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | SO4 SULFATE ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4；292 K；2.4 M ammonium sulfate, 0.1 M citric acid, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 2.28 Å R-free 0.284 |
| 4B9Q Open conformation of ATP-bound Hsp70 homolog DnaK Deposited 2012-09-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–605（605 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | ATP ADENOSINE-5'-TRIPHOSPHATE × 1 MG MAGNESIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.6；291 K；28% PEG4000, 5% GLYCEROL, 0.1 M AMMONIUM ACETATE, 0.085 M SODIUM CITRATE PH 5.6, 5 MM ATP, 10 MM MGCL2, 291 K
|
Resolution 2.40 Å R-free 0.239 |
| 4B9Q Open conformation of ATP-bound Hsp70 homolog DnaK Deposited 2012-09-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–605（605 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | ATP ADENOSINE-5'-TRIPHOSPHATE × 1 MG MAGNESIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.6；291 K；28% PEG4000, 5% GLYCEROL, 0.1 M AMMONIUM ACETATE, 0.085 M SODIUM CITRATE PH 5.6, 5 MM ATP, 10 MM MGCL2, 291 K
|
Resolution 2.40 Å R-free 0.239 |
| 4B9Q Open conformation of ATP-bound Hsp70 homolog DnaK Deposited 2012-09-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
1–605（605 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | ATP ADENOSINE-5'-TRIPHOSPHATE × 1 MG MAGNESIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.6；291 K；28% PEG4000, 5% GLYCEROL, 0.1 M AMMONIUM ACETATE, 0.085 M SODIUM CITRATE PH 5.6, 5 MM ATP, 10 MM MGCL2, 291 K
|
Resolution 2.40 Å R-free 0.239 |
| 4B9Q Open conformation of ATP-bound Hsp70 homolog DnaK Deposited 2012-09-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain D
1–605（605 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | ATP ADENOSINE-5'-TRIPHOSPHATE × 1 MG MAGNESIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.6；291 K；28% PEG4000, 5% GLYCEROL, 0.1 M AMMONIUM ACETATE, 0.085 M SODIUM CITRATE PH 5.6, 5 MM ATP, 10 MM MGCL2, 291 K
|
Resolution 2.40 Å R-free 0.239 |
| 4EZN Crystal structure of the substrate binding domain of E.coli DnaK in complex with pyrrhocoricin Deposited 2012-05-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
Chain B
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；292 K；2.4 M ammonium sulfate,
0.1 M sodium acetate pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.80 Å R-free 0.238 |
| 4EZN Crystal structure of the substrate binding domain of E.coli DnaK in complex with pyrrhocoricin Deposited 2012-05-03 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；292 K；2.4 M ammonium sulfate,
0.1 M sodium acetate pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.80 Å R-free 0.238 |
| 4EZN Crystal structure of the substrate binding domain of E.coli DnaK in complex with pyrrhocoricin Deposited 2012-05-03 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；292 K；2.4 M ammonium sulfate,
0.1 M sodium acetate pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.80 Å R-free 0.238 |
| 4EZO Crystal structure of the substrate binding domain of E.coli DnaK in complex with PR-39 (residues 1 to 15) Deposited 2012-05-03 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | SO4 SULFATE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；292 K；2.4 M ammonium sulfate,
0.1 M citric acid pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.90 Å R-free 0.240 |
| 4EZO Crystal structure of the substrate binding domain of E.coli DnaK in complex with PR-39 (residues 1 to 15) Deposited 2012-05-03 | Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；292 K；2.4 M ammonium sulfate,
0.1 M citric acid pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.90 Å R-free 0.240 |
| 4EZO Crystal structure of the substrate binding domain of E.coli DnaK in complex with PR-39 (residues 1 to 15) Deposited 2012-05-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
Chain B
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | SO4 SULFATE ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；292 K；2.4 M ammonium sulfate,
0.1 M citric acid pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.90 Å R-free 0.240 |
| 4EZP Crystal structure of the substrate binding domain of E.coli DnaK in complex with A3-APO(residues 1 to 20) Deposited 2012-05-03 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；292 K；2.4 M ammonium sulfate,
0.1 M sodium acetate pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.65 Å R-free 0.242 |
| 4EZP Crystal structure of the substrate binding domain of E.coli DnaK in complex with A3-APO(residues 1 to 20) Deposited 2012-05-03 | Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；292 K；2.4 M ammonium sulfate,
0.1 M sodium acetate pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.65 Å R-free 0.242 |
| 4EZP Crystal structure of the substrate binding domain of E.coli DnaK in complex with A3-APO(residues 1 to 20) Deposited 2012-05-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
Chain B
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | SO4 SULFATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；292 K；2.4 M ammonium sulfate,
0.1 M sodium acetate pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.65 Å R-free 0.242 |
| 4EZP Crystal structure of the substrate binding domain of E.coli DnaK in complex with A3-APO(residues 1 to 20) Deposited 2012-05-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
Chain B
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | SO4 SULFATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；292 K；2.4 M ammonium sulfate,
0.1 M sodium acetate pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.65 Å R-free 0.242 |
| 4EZQ Crystal structure of the substrate binding domain of E.coli DnaK in complex with the C-terminal part of pyrrhocoricin (residues 12 to 20) Deposited 2012-05-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 8 PDB declaration: octameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 9；292 K；3.2 M ammonium sulfate,
0.1 M bicine pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 2.00 Å R-free 0.321 |
| 4EZQ Crystal structure of the substrate binding domain of E.coli DnaK in complex with the C-terminal part of pyrrhocoricin (residues 12 to 20) Deposited 2012-05-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 9；292 K；3.2 M ammonium sulfate,
0.1 M bicine pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 2.00 Å R-free 0.321 |
| 4EZQ Crystal structure of the substrate binding domain of E.coli DnaK in complex with the C-terminal part of pyrrhocoricin (residues 12 to 20) Deposited 2012-05-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 9；292 K；3.2 M ammonium sulfate,
0.1 M bicine pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 2.00 Å R-free 0.321 |
| 4EZQ Crystal structure of the substrate binding domain of E.coli DnaK in complex with the C-terminal part of pyrrhocoricin (residues 12 to 20) Deposited 2012-05-03 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 9；292 K；3.2 M ammonium sulfate,
0.1 M bicine pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 2.00 Å R-free 0.321 |
| 4EZR Crystal structure of the substrate binding domain of E.coli DnaK in complex with the C-terminal part of drosocin (residues 12 to 19) Deposited 2012-05-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 8 PDB declaration: octameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 9；292 K；3.0 M ammonium sulfate,
0.1 M bicine pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.90 Å R-free 0.290 |
| 4EZR Crystal structure of the substrate binding domain of E.coli DnaK in complex with the C-terminal part of drosocin (residues 12 to 19) Deposited 2012-05-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 9；292 K；3.0 M ammonium sulfate,
0.1 M bicine pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.90 Å R-free 0.290 |
| 4EZR Crystal structure of the substrate binding domain of E.coli DnaK in complex with the C-terminal part of drosocin (residues 12 to 19) Deposited 2012-05-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 9；292 K；3.0 M ammonium sulfate,
0.1 M bicine pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.90 Å R-free 0.290 |
| 4EZR Crystal structure of the substrate binding domain of E.coli DnaK in complex with the C-terminal part of drosocin (residues 12 to 19) Deposited 2012-05-03 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 9；292 K；3.0 M ammonium sulfate,
0.1 M bicine pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.90 Å R-free 0.290 |
| 4EZS Crystal structure of the substrate binding domain of E.coli DnaK in complex with metchnikowin (residues 20 to 26) Deposited 2012-05-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 8 PDB declaration: octameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | SO4 SULFATE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；292 K；3.2 M ammonium sulfate
0.1 M tris, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.90 Å R-free 0.256 |
| 4EZS Crystal structure of the substrate binding domain of E.coli DnaK in complex with metchnikowin (residues 20 to 26) Deposited 2012-05-03 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；292 K；3.2 M ammonium sulfate
0.1 M tris, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.90 Å R-free 0.256 |
| 4EZS Crystal structure of the substrate binding domain of E.coli DnaK in complex with metchnikowin (residues 20 to 26) Deposited 2012-05-03 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；292 K；3.2 M ammonium sulfate
0.1 M tris, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.90 Å R-free 0.256 |
| 4EZS Crystal structure of the substrate binding domain of E.coli DnaK in complex with metchnikowin (residues 20 to 26) Deposited 2012-05-03 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 4 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；292 K；3.2 M ammonium sulfate
0.1 M tris, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.90 Å R-free 0.256 |
| 4EZS Crystal structure of the substrate binding domain of E.coli DnaK in complex with metchnikowin (residues 20 to 26) Deposited 2012-05-03 | Different experimental conditions Different structure-quality metrics | Assembly 5 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；292 K；3.2 M ammonium sulfate
0.1 M tris, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.90 Å R-free 0.256 |
| 4EZT Crystal structure of the substrate binding domain of E.coli DnaK in complex with heliocin (residues 14 to 21) Deposited 2012-05-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 8 PDB declaration: octameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；292 K；3.2 M ammonium sulfate,
0.1 M imidazole pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 2.00 Å R-free 0.271 |
| 4EZT Crystal structure of the substrate binding domain of E.coli DnaK in complex with heliocin (residues 14 to 21) Deposited 2012-05-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；292 K；3.2 M ammonium sulfate,
0.1 M imidazole pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 2.00 Å R-free 0.271 |
| 4EZT Crystal structure of the substrate binding domain of E.coli DnaK in complex with heliocin (residues 14 to 21) Deposited 2012-05-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；292 K；3.2 M ammonium sulfate,
0.1 M imidazole pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 2.00 Å R-free 0.271 |
| 4EZT Crystal structure of the substrate binding domain of E.coli DnaK in complex with heliocin (residues 14 to 21) Deposited 2012-05-03 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；292 K；3.2 M ammonium sulfate,
0.1 M imidazole pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 2.00 Å R-free 0.271 |
| 4EZU Crystal structure of the substrate binding domain of E.coli DnaK in complex with PR-bombesin in space group I222 Deposited 2012-05-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 8 PDB declaration: octameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；292 K；3.0 M ammonium sulfate,
0.1 M HEPES pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.90 Å R-free 0.276 |
| 4EZU Crystal structure of the substrate binding domain of E.coli DnaK in complex with PR-bombesin in space group I222 Deposited 2012-05-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；292 K；3.0 M ammonium sulfate,
0.1 M HEPES pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.90 Å R-free 0.276 |
| 4EZU Crystal structure of the substrate binding domain of E.coli DnaK in complex with PR-bombesin in space group I222 Deposited 2012-05-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；292 K；3.0 M ammonium sulfate,
0.1 M HEPES pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.90 Å R-free 0.276 |
| 4EZU Crystal structure of the substrate binding domain of E.coli DnaK in complex with PR-bombesin in space group I222 Deposited 2012-05-03 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；292 K；3.0 M ammonium sulfate,
0.1 M HEPES pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.90 Å R-free 0.276 |
| 4EZV Crystal structure of the substrate binding domain of E.coli DnaK in complex with PR-bombesin in space group P21212 Deposited 2012-05-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 8 PDB declaration: octameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
Chain B
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；292 K；2.8 M ammonium sulfate,
0.1 M HEPES pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 2.10 Å R-free 0.259 |
| 4EZV Crystal structure of the substrate binding domain of E.coli DnaK in complex with PR-bombesin in space group P21212 Deposited 2012-05-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
Chain B
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；292 K；2.8 M ammonium sulfate,
0.1 M HEPES pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 2.10 Å R-free 0.259 |
| 4EZV Crystal structure of the substrate binding domain of E.coli DnaK in complex with PR-bombesin in space group P21212 Deposited 2012-05-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
Chain B
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；292 K；2.8 M ammonium sulfate,
0.1 M HEPES pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 2.10 Å R-free 0.259 |
| 4EZV Crystal structure of the substrate binding domain of E.coli DnaK in complex with PR-bombesin in space group P21212 Deposited 2012-05-03 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；292 K；2.8 M ammonium sulfate,
0.1 M HEPES pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 2.10 Å R-free 0.259 |
| 4EZV Crystal structure of the substrate binding domain of E.coli DnaK in complex with PR-bombesin in space group P21212 Deposited 2012-05-03 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 5 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；292 K；2.8 M ammonium sulfate,
0.1 M HEPES pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 2.10 Å R-free 0.259 |
| 4EZW Crystal structure of the substrate binding domain of E.coli DnaK in complex with the designer peptide NRLLLTG Deposited 2012-05-03 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | SO4 SULFATE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.1；292 K；2.4 M ammonium sulfate,
0.1 M citric acid pH 4.1, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.80 Å R-free 0.226 |
| 4EZW Crystal structure of the substrate binding domain of E.coli DnaK in complex with the designer peptide NRLLLTG Deposited 2012-05-03 | Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.1；292 K；2.4 M ammonium sulfate,
0.1 M citric acid pH 4.1, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.80 Å R-free 0.226 |
| 4EZW Crystal structure of the substrate binding domain of E.coli DnaK in complex with the designer peptide NRLLLTG Deposited 2012-05-03 | Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain C
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.1；292 K；2.4 M ammonium sulfate,
0.1 M citric acid pH 4.1, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.80 Å R-free 0.226 |
| 4EZW Crystal structure of the substrate binding domain of E.coli DnaK in complex with the designer peptide NRLLLTG Deposited 2012-05-03 | Different experimental conditions Different structure-quality metrics | Assembly 4 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain D
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.1；292 K；2.4 M ammonium sulfate,
0.1 M citric acid pH 4.1, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.80 Å R-free 0.226 |
| 4EZX Crystal structure of the substrate binding domain of E.coli DnaK in complex with the designer peptide NRLMLTG Deposited 2012-05-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
Chain B
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | SO4 SULFATE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；292 K；2.1 M ammonium sulfate,
0.1 M citric acid pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.70 Å R-free 0.209 |
| 4EZX Crystal structure of the substrate binding domain of E.coli DnaK in complex with the designer peptide NRLMLTG Deposited 2012-05-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
Chain B
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | SO4 SULFATE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；292 K；2.1 M ammonium sulfate,
0.1 M citric acid pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.70 Å R-free 0.209 |
| 4EZX Crystal structure of the substrate binding domain of E.coli DnaK in complex with the designer peptide NRLMLTG Deposited 2012-05-03 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | SO4 SULFATE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；292 K；2.1 M ammonium sulfate,
0.1 M citric acid pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.70 Å R-free 0.209 |
| 4EZX Crystal structure of the substrate binding domain of E.coli DnaK in complex with the designer peptide NRLMLTG Deposited 2012-05-03 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；292 K；2.1 M ammonium sulfate,
0.1 M citric acid pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.70 Å R-free 0.209 |
| 4EZY Crystal structure of the substrate binding domain of E.coli DnaK in complex with the designer peptide NRLILTG Deposited 2012-05-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 8 PDB declaration: octameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | SO4 SULFATE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；292 K；3.1 M ammonium sulfate,
0.1 M MES pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.85 Å R-free 0.280 |
| 4EZY Crystal structure of the substrate binding domain of E.coli DnaK in complex with the designer peptide NRLILTG Deposited 2012-05-03 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；292 K；3.1 M ammonium sulfate,
0.1 M MES pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.85 Å R-free 0.280 |
| 4EZY Crystal structure of the substrate binding domain of E.coli DnaK in complex with the designer peptide NRLILTG Deposited 2012-05-03 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；292 K；3.1 M ammonium sulfate,
0.1 M MES pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.85 Å R-free 0.280 |
| 4EZY Crystal structure of the substrate binding domain of E.coli DnaK in complex with the designer peptide NRLILTG Deposited 2012-05-03 | Different experimental conditions Different structure-quality metrics | Assembly 4 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；292 K；3.1 M ammonium sulfate,
0.1 M MES pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.85 Å R-free 0.280 |
| 4EZZ Crystal structure of the substrate binding domain of E.coli DnaK in complex with the designer peptide ELPLVKI Deposited 2012-05-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 8 PDB declaration: octameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 9；292 K；3.0 M ammonium sulfate,
0.1 M bicine pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 2.05 Å R-free 0.308 |
| 4EZZ Crystal structure of the substrate binding domain of E.coli DnaK in complex with the designer peptide ELPLVKI Deposited 2012-05-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 9；292 K；3.0 M ammonium sulfate,
0.1 M bicine pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 2.05 Å R-free 0.308 |
| 4EZZ Crystal structure of the substrate binding domain of E.coli DnaK in complex with the designer peptide ELPLVKI Deposited 2012-05-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 9；292 K；3.0 M ammonium sulfate,
0.1 M bicine pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 2.05 Å R-free 0.308 |
| 4EZZ Crystal structure of the substrate binding domain of E.coli DnaK in complex with the designer peptide ELPLVKI Deposited 2012-05-03 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 9；292 K；3.0 M ammonium sulfate,
0.1 M bicine pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 2.05 Å R-free 0.308 |
| 4F00 Crystal structure of the substrate binding domain of E.coli DnaK in complex with an apidaecin fragment from the bumblebee (residues 3 to 11) Deposited 2012-05-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 8 PDB declaration: octameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；292 K；2.4 M sodium malonate
0.1 M citric acid pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.95 Å R-free 0.242 |
| 4F00 Crystal structure of the substrate binding domain of E.coli DnaK in complex with an apidaecin fragment from the bumblebee (residues 3 to 11) Deposited 2012-05-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；292 K；2.4 M sodium malonate
0.1 M citric acid pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.95 Å R-free 0.242 |
| 4F00 Crystal structure of the substrate binding domain of E.coli DnaK in complex with an apidaecin fragment from the bumblebee (residues 3 to 11) Deposited 2012-05-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；292 K；2.4 M sodium malonate
0.1 M citric acid pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.95 Å R-free 0.242 |
| 4F00 Crystal structure of the substrate binding domain of E.coli DnaK in complex with an apidaecin fragment from the bumblebee (residues 3 to 11) Deposited 2012-05-03 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；292 K；2.4 M sodium malonate
0.1 M citric acid pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.95 Å R-free 0.242 |
| 4F01 Crystal structure of an artificial dimeric DnaK complex Deposited 2012-05-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.4；292 K；2.9 M ammonium sulfate
0.1 M MES pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.40 Å R-free 0.213 |
| 4F01 Crystal structure of an artificial dimeric DnaK complex Deposited 2012-05-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.4；292 K；2.9 M ammonium sulfate
0.1 M MES pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.40 Å R-free 0.213 |
| 4F01 Crystal structure of an artificial dimeric DnaK complex Deposited 2012-05-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
Chain B
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.4；292 K；2.9 M ammonium sulfate
0.1 M MES pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.40 Å R-free 0.213 |
| 4HY9 Crystal structure of the substrate binding domain of E.coli DnaK in complex with pyrrhocoricin_LYZZ (residues 1 to 11) Deposited 2012-11-13 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.1；292 K；2.2 M ammonium sulfate, 0.1 M citric acid pH 4.1, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.55 Å R-free 0.241 |
| 4HY9 Crystal structure of the substrate binding domain of E.coli DnaK in complex with pyrrhocoricin_LYZZ (residues 1 to 11) Deposited 2012-11-13 | Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.1；292 K；2.2 M ammonium sulfate, 0.1 M citric acid pH 4.1, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.55 Å R-free 0.241 |
| 4HYB Crystal structure of the substrate binding domain of E.coli DnaK in complex with pyrrhocoricin_LYZI (residues 1 to 10) Deposited 2012-11-13 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；292 K；2.4 M ammonium sulfate,
0.1 M sodium acetate pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.70 Å R-free 0.244 |
| 4HYB Crystal structure of the substrate binding domain of E.coli DnaK in complex with pyrrhocoricin_LYZI (residues 1 to 10) Deposited 2012-11-13 | Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
389–607（219 aa）
Fragment：UNP residues 389-607
|
Not recorded | SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；292 K；2.4 M ammonium sulfate,
0.1 M sodium acetate pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.70 Å R-free 0.244 |
| 4JN4 Allosteric opening of the polypeptide-binding site when an Hsp70 binds ATP Deposited 2013-03-14 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
2–610（609 aa）
Fragment：UNP residues 2-610
Chain B
2–610（609 aa）
Fragment：UNP residues 2-610
|
Mutation：N432M,Q433G,S434G Mutation：N432M,Q433G,S434G | MG MAGNESIUM ION × 2 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 SO4 SULFATE ION × 11 GOL GLYCEROL × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；273 K；1.8-2.0 M ammonium sulfate, 0.1 M Hepes-NaOH, 2-3% PEG 400, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 273K
|
Resolution 2.30 Å R-free 0.197 |
| 4JNE Allosteric opening of the polypeptide-binding site when an Hsp70 binds ATP Deposited 2013-03-15 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
2–610（609 aa）
Fragment：UNP RESIDUES 2-610
Chain B
2–610（609 aa）
Fragment：UNP RESIDUES 2-610
|
Mutation：N432M,Q433G,S434G Mutation：N432M,Q433G,S434G | MG MAGNESIUM ION × 2 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 SO4 SULFATE ION × 11 GOL GLYCEROL × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；273 K；1.8-2.0 M ammonium sulfate, 0.1 M Hepes-NaOH, 2-3% PEG 400, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 273K
|
Resolution 1.96 Å R-free 0.201 |
| 4JNF Allosteric opening of the polypeptide-binding site when an Hsp70 binds ATP Deposited 2013-03-15 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
389–610（222 aa）
Fragment：Substrate binding domain, unp RESIDUES 389-610
|
Mutation：N432M,Q433G,S434G | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；293 K；2.0 M ammonium sulfate, 0.1 M Tris-HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.62 Å R-free 0.216 |
| 4JWC Crystal structure of the substrate binding domain of E.coli DnaK in complex with bovine Bac7(1-16) Deposited 2013-03-27 | Different construct Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：uno residues 389-607
|
Not recorded | SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.4；292 K；2.4 M ammonium sulfate,
0.1 M citric acid, pH 4.4, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.80 Å R-free 0.225 |
| 4JWC Crystal structure of the substrate binding domain of E.coli DnaK in complex with bovine Bac7(1-16) Deposited 2013-03-27 | Different construct Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
389–607（219 aa）
Fragment：uno residues 389-607
|
Not recorded | SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.4；292 K；2.4 M ammonium sulfate,
0.1 M citric acid, pH 4.4, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.80 Å R-free 0.225 |
| 4JWC Crystal structure of the substrate binding domain of E.coli DnaK in complex with bovine Bac7(1-16) Deposited 2013-03-27 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：uno residues 389-607
Chain B
389–607（219 aa）
Fragment：uno residues 389-607
|
Not recorded | SO4 SULFATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.4；292 K；2.4 M ammonium sulfate,
0.1 M citric acid, pH 4.4, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.80 Å R-free 0.225 |
| 4JWD Crystal structure of the substrate binding domain of E.coli DnaK in complex with bovine Bac7(15-28) Deposited 2013-03-27 | Different construct Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：unp residues 389-607
|
Not recorded | SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.4；292 K；2.2 M ammonium sulfate,
0.1 M citric acid pH 4.4, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.95 Å R-free 0.217 |
| 4JWD Crystal structure of the substrate binding domain of E.coli DnaK in complex with bovine Bac7(15-28) Deposited 2013-03-27 | Different construct Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
389–607（219 aa）
Fragment：unp residues 389-607
|
Not recorded | SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.4；292 K；2.2 M ammonium sulfate,
0.1 M citric acid pH 4.4, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.95 Å R-free 0.217 |
| 4JWE Crystal structure of the substrate binding domain of E.coli DnaK in complex with sheep Bac7(1-21) Deposited 2013-03-27 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：unp residues 389-607
|
Not recorded | SO4 SULFATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；292 K；2.4 M ammonium sulfate,
0.1 M sodium acetate pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.95 Å R-free 0.226 |
| 4JWE Crystal structure of the substrate binding domain of E.coli DnaK in complex with sheep Bac7(1-21) Deposited 2013-03-27 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
389–607（219 aa）
Fragment：unp residues 389-607
|
Not recorded | SO4 SULFATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；292 K；2.4 M ammonium sulfate,
0.1 M sodium acetate pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.95 Å R-free 0.226 |
| 4JWE Crystal structure of the substrate binding domain of E.coli DnaK in complex with sheep Bac7(1-21) Deposited 2013-03-27 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：unp residues 389-607
Chain B
389–607（219 aa）
Fragment：unp residues 389-607
|
Not recorded | SO4 SULFATE ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；292 K；2.4 M ammonium sulfate,
0.1 M sodium acetate pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.95 Å R-free 0.226 |
| 4JWI Crystal structure of the substrate binding domain of E.coli DnaK in complex with sheep Bac7(35-43) Deposited 2013-03-27 | Different construct Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：unp residues 389-607
|
Not recorded | SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.4；292 K；2.2 M ammonium sulfate,
0.1 M citric acid, pH 4.4, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.90 Å R-free 0.229 |
| 4JWI Crystal structure of the substrate binding domain of E.coli DnaK in complex with sheep Bac7(35-43) Deposited 2013-03-27 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
389–607（219 aa）
Fragment：unp residues 389-607
|
Not recorded | SO4 SULFATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.4；292 K；2.2 M ammonium sulfate,
0.1 M citric acid, pH 4.4, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.90 Å R-free 0.229 |
| 4JWI Crystal structure of the substrate binding domain of E.coli DnaK in complex with sheep Bac7(35-43) Deposited 2013-03-27 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
389–607（219 aa）
Fragment：unp residues 389-607
Chain B
389–607（219 aa）
Fragment：unp residues 389-607
|
Not recorded | SO4 SULFATE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.4；292 K；2.2 M ammonium sulfate,
0.1 M citric acid, pH 4.4, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.90 Å R-free 0.229 |
| 4R5G Crystal structure of the DnaK C-terminus with the inhibitor PET-16 Deposited 2014-08-21 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：C-terminus of DnaK
Chain B
389–607（219 aa）
Fragment：C-terminus of DnaK
|
Not recorded | 3JE triphenyl(phenylethynyl)phosphonium × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.5；293 K；1.8M ammonium sulfate,
0.1M Bis-Tris pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 3.45 Å R-free 0.328 |
| 4R5G Crystal structure of the DnaK C-terminus with the inhibitor PET-16 Deposited 2014-08-21 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：C-terminus of DnaK
Chain B
389–607（219 aa）
Fragment：C-terminus of DnaK
|
Not recorded | 3JE triphenyl(phenylethynyl)phosphonium × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.5；293 K；1.8M ammonium sulfate,
0.1M Bis-Tris pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 3.45 Å R-free 0.328 |
| 4R5I Crystal structure of the DnaK C-terminus with the substrate peptide NRLLLTG Deposited 2014-08-21 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：C-terminus of DnaK
|
Not recorded | SO4 SULFATE ION × 3 PO4 PHOSPHATE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.5；293 K；2.2M ammonium sulfate, 0.1M Bis-Tris pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 1.97 Å R-free 0.218 |
| 4R5J Crystal structure of the DnaK C-terminus (Dnak-SBD-A) Deposited 2014-08-21 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：C-terminus of DnaK
Chain C
389–607（219 aa）
Fragment：C-terminus of DnaK
|
Not recorded | CA CALCIUM ION × 3 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；0.15 M potassium bromide, 30% w/v polyethylene glycol monomethyl ether 2000, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 2.36 Å R-free 0.258 |
| 4R5J Crystal structure of the DnaK C-terminus (Dnak-SBD-A) Deposited 2014-08-21 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain B
389–607（219 aa）
Fragment：C-terminus of DnaK
Chain D
389–607（219 aa）
Fragment：C-terminus of DnaK
|
Not recorded | CA CALCIUM ION × 2 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；0.15 M potassium bromide, 30% w/v polyethylene glycol monomethyl ether 2000, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 2.36 Å R-free 0.258 |
| 4R5K Crystal structure of the DnaK C-terminus (Dnak-SBD-B) Deposited 2014-08-21 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：C-terminus of DnaK
Chain B
389–607（219 aa）
Fragment：C-terminus of DnaK
|
Not recorded | SO4 SULFATE ION × 4 CA CALCIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；0.15 M potassium bromide, 30% w/v polyethylene glycol monomethyl ether 2000, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 1.75 Å R-free 0.218 |
| 4R5L Crystal structure of the DnaK C-terminus (Dnak-SBD-C) Deposited 2014-08-21 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
Fragment：C-terminus of DnaK
Chain B
389–607（219 aa）
Fragment：C-terminus of DnaK
|
Not recorded | SO4 SULFATE ION × 6 PO4 PHOSPHATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.5；293 K；2.1M ammonium sulfate, 0.1M Bis-Tris pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 2.97 Å R-free 0.243 |
| 4R5L Crystal structure of the DnaK C-terminus (Dnak-SBD-C) Deposited 2014-08-21 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain C
389–607（219 aa）
Fragment：C-terminus of DnaK
Chain D
389–607（219 aa）
Fragment：C-terminus of DnaK
|
Not recorded | SO4 SULFATE ION × 4 PO4 PHOSPHATE ION × 1 CA CALCIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.5；293 K；2.1M ammonium sulfate, 0.1M Bis-Tris pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 2.97 Å R-free 0.243 |
| 5NRO Structure of full-length DnaK with bound J-domain Deposited 2017-04-25 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
1–605（605 aa）
|
Mutation：E47C, T199A, F529C | ATP ADENOSINE-5'-TRIPHOSPHATE × 1 MG MAGNESIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；291 K；9% w/v PEG 8000
0.1M calcium acetate
0.1 M imidazole pH 6.5
protein at 18 mg/ml
crystalization drop contained 200 nl protein + 100 nl reservoir solution
|
Resolution 3.25 Å R-free 0.234 |
| 5OOW Crystal structure of lobe II from the nucleotide binding domain of DnaK in complex with AMPPCP Deposited 2017-08-09 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
183–383（201 aa）
|
Not recorded | ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；277 K；25% PEG1500, 0.1 M MIB buffer pH 7.0
|
Resolution 2.90 Å R-free 0.249 |
| 5OOW Crystal structure of lobe II from the nucleotide binding domain of DnaK in complex with AMPPCP Deposited 2017-08-09 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
183–383（201 aa）
|
Not recorded | ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；277 K；25% PEG1500, 0.1 M MIB buffer pH 7.0
|
Resolution 2.90 Å R-free 0.249 |
| 7JMM Crystal structure of the substrate-binding domain of E. coli DnaK in complex with the peptide RAKNIILLSR Deposited 2020-08-02 | Different construct Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
|
Not recorded | SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；293 K；2.4 M (NH4)2SO4, 0.1 M K3PO4
|
Resolution 2.56 Å R-free 0.327 |
| 7JN8 Crystal structure of the substrate-binding domain of E. coli DnaK in complex with the peptide RGNTLVIVSR Deposited 2020-08-04 | Different construct Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
|
Not recorded | SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；293 K；2.8 M (NH4)2SO4, 0.1 M K3PO4
|
Resolution 3.09 Å R-free 0.319 |
| 7JN9 Crystal structure of the substrate-binding domain of E. coli DnaK in complex with the peptide QEHTGSQLRIAAYGP Deposited 2020-08-04 | Different construct Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
|
Not recorded | SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；293 K；2.4 M (NH4)2SO4, 0.1 M K3PO4
|
Resolution 2.40 Å R-free 0.286 |
| 7JNE Crystal structure of the substrate-binding domain of E. coli DnaK in complex with the peptide RGSQLRIASR Deposited 2020-08-04 | Different construct Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
|
Not recorded | SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；293 K；2.4 M (NH4)2SO4, 0.1 M K3PO4
|
Resolution 2.54 Å R-free 0.334 |
| 7N6J Crystal structure of the substrate-binding domain of E. coli DnaK in complex with the peptide RKQSTIALALLPLLFTPRR Deposited 2021-06-08 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
|
Not recorded | SO4 SULFATE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；293 K；2.4 M (NH4)2SO4, 0.1 M K3PO4 pH 7.0
|
Resolution 2.00 Å R-free 0.265 |
| 7N6K Crystal structure of the substrate-binding domain of E. coli DnaK in complex with the peptide RALALLPLSR Deposited 2021-06-08 | Different construct Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
|
Not recorded | SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.9；293 K；2.6 M (NH4)2SO4, 0.1 M K3PO4
|
Resolution 2.55 Å R-free 0.306 |
| 7N6L Crystal structure of the substrate-binding domain of E. coli DnaK in complex with the peptide EANQQKPLLGLFADG Deposited 2021-06-08 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
|
Not recorded | GOL GLYCEROL × 2 SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；293 K；2.8 M (NH4)2SO4, 0.1 M K3PO4
|
Resolution 2.40 Å R-free 0.332 |
| 7N6M Crystal structure of the substrate-binding domain of E. coli DnaK in complex with the peptide RQKPLLGLSR Deposited 2021-06-08 | Different construct Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
389–607（219 aa）
|
Not recorded | SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；293 K；2.6 M (NH4)2SO4, 0.1 M K3PO4
|
Resolution 1.82 Å R-free 0.287 |
52 other PDB entries and 124 assemblies. Open the comparison page and filter oligomeric states
View Construct and Data Evidence
| UniProt name | DNAK_ECOLI |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A； PDBConstruct 1–219； UniProt 389–607 Author chain B； PDBConstruct 1–219； UniProt 389–607 |
