4fao

Specificity and Structure of a high affinity Activin-like 1 (ALK1) signaling complex

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Growth/differentiation factor 2

Homo sapiens

UniProt Q9UK05

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 6 Serine/threonine-protein kinase receptor R3 × 2 (P37023) Activin receptor type-2B × 2 (Q13705) 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 SODIUM ION × 1 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 6 Serine/threonine-protein kinase receptor R3 × 2 (P37023) Activin receptor type-2B × 2 (Q13705) 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 SODIUM ION × 1 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 6 Serine/threonine-protein kinase receptor R3 × 2 (P37023) Activin receptor type-2B × 2 (Q13705) 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 SODIUM ION × 1 Consistent with protein count
4 Protein heterocomplex Heteromer Protein 6 Serine/threonine-protein kinase receptor R3 × 2 (P37023) Activin receptor type-2B × 2 (Q13705) 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 SODIUM ION × 1 Consistent with protein count
5 Protein heterocomplex Heteromer Protein 6 Serine/threonine-protein kinase receptor R3 × 2 (P37023) Activin receptor type-2B × 2 (Q13705) 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 SODIUM ION × 1 Consistent with protein count
6 Protein heterocomplex Heteromer Protein 6 Serine/threonine-protein kinase receptor R3 × 2 (P37023) Activin receptor type-2B × 2 (Q13705) 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 SODIUM ION × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name GDF2_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–110; UniProt 320–429 Author chain B; PDBConstruct 1–110; UniProt 320–429 Author chain G; PDBConstruct 1–110; UniProt 320–429 Author chain H; PDBConstruct 1–110; UniProt 320–429 Author chain M; PDBConstruct 1–110; UniProt 320–429 Author chain N; PDBConstruct 1–110; UniProt 320–429 Author chain S; PDBConstruct 1–110; UniProt 320–429 Author chain T; PDBConstruct 1–110; UniProt 320–429 Author chain a; PDBConstruct 1–110; UniProt 320–429 Author chain b; PDBConstruct 1–110; UniProt 320–429 Author chain g; PDBConstruct 1–110; UniProt 320–429 Author chain h; PDBConstruct 1–110; UniProt 320–429

Serine/threonine-protein kinase receptor R3

Homo sapiens

UniProt P37023

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 6 Growth/differentiation factor 2 × 2 (Q9UK05) Activin receptor type-2B × 2 (Q13705) 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 SODIUM ION × 1 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 6 Growth/differentiation factor 2 × 2 (Q9UK05) Activin receptor type-2B × 2 (Q13705) 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 SODIUM ION × 1 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 6 Growth/differentiation factor 2 × 2 (Q9UK05) Activin receptor type-2B × 2 (Q13705) 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 SODIUM ION × 1 Consistent with protein count
4 Protein heterocomplex Heteromer Protein 6 Growth/differentiation factor 2 × 2 (Q9UK05) Activin receptor type-2B × 2 (Q13705) 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 SODIUM ION × 1 Consistent with protein count
5 Protein heterocomplex Heteromer Protein 6 Growth/differentiation factor 2 × 2 (Q9UK05) Activin receptor type-2B × 2 (Q13705) 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 SODIUM ION × 1 Consistent with protein count
6 Protein heterocomplex Heteromer Protein 6 Growth/differentiation factor 2 × 2 (Q9UK05) Activin receptor type-2B × 2 (Q13705) 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 SODIUM ION × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ACVL1_HUMAN
Isoform —
PDB entities 2
Chains and sequence ranges Author chain C; PDBConstruct 3–99; UniProt 22–118 Author chain D; PDBConstruct 3–99; UniProt 22–118 Author chain I; PDBConstruct 3–99; UniProt 22–118 Author chain J; PDBConstruct 3–99; UniProt 22–118 Author chain O; PDBConstruct 3–99; UniProt 22–118 Author chain P; PDBConstruct 3–99; UniProt 22–118 Author chain U; PDBConstruct 3–99; UniProt 22–118 Author chain V; PDBConstruct 3–99; UniProt 22–118 Author chain c; PDBConstruct 3–99; UniProt 22–118 Author chain d; PDBConstruct 3–99; UniProt 22–118 Author chain i; PDBConstruct 3–99; UniProt 22–118 Author chain j; PDBConstruct 3–99; UniProt 22–118

Activin receptor type-2B

Homo sapiens

UniProt Q13705

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 6 Growth/differentiation factor 2 × 2 (Q9UK05) Serine/threonine-protein kinase receptor R3 × 2 (P37023) 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 SODIUM ION × 1 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 6 Growth/differentiation factor 2 × 2 (Q9UK05) Serine/threonine-protein kinase receptor R3 × 2 (P37023) 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 SODIUM ION × 1 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 6 Growth/differentiation factor 2 × 2 (Q9UK05) Serine/threonine-protein kinase receptor R3 × 2 (P37023) 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 SODIUM ION × 1 Consistent with protein count
4 Protein heterocomplex Heteromer Protein 6 Growth/differentiation factor 2 × 2 (Q9UK05) Serine/threonine-protein kinase receptor R3 × 2 (P37023) 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 SODIUM ION × 1 Consistent with protein count
5 Protein heterocomplex Heteromer Protein 6 Growth/differentiation factor 2 × 2 (Q9UK05) Serine/threonine-protein kinase receptor R3 × 2 (P37023) 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 SODIUM ION × 1 Consistent with protein count
6 Protein heterocomplex Heteromer Protein 6 Growth/differentiation factor 2 × 2 (Q9UK05) Serine/threonine-protein kinase receptor R3 × 2 (P37023) 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 SODIUM ION × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name AVR2B_HUMAN
Isoform —
PDB entities 3
Chains and sequence ranges Author chain E; PDBConstruct 3–118; UniProt 19–134 Author chain F; PDBConstruct 3–118; UniProt 19–134 Author chain K; PDBConstruct 3–118; UniProt 19–134 Author chain L; PDBConstruct 3–118; UniProt 19–134 Author chain Q; PDBConstruct 3–118; UniProt 19–134 Author chain R; PDBConstruct 3–118; UniProt 19–134 Author chain W; PDBConstruct 3–118; UniProt 19–134 Author chain X; PDBConstruct 3–118; UniProt 19–134 Author chain e; PDBConstruct 3–118; UniProt 19–134 Author chain f; PDBConstruct 3–118; UniProt 19–134 Author chain k; PDBConstruct 3–118; UniProt 19–134 Author chain l; PDBConstruct 3–118; UniProt 19–134

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id4fao
Deposition date deposition_date2012-05-22
Structure title titleSpecificity and Structure of a high affinity Activin-like 1 (ALK1) signaling complex
Keywords keywordstgf-beta, CTK, cystine knot, extracellular domain, receptor, SIGNALING PROTEIN-SIGNALING PROTEIN complex; SIGNALING PROTEIN/SIGNALING PROTEIN
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

4fao__assembly_3__model_1

Assembly 3 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

4fao__assembly_3__model_1 | I(q)

10-2 10-1 105 106 107 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

4fao__assembly_3__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)30.11 Å
Rg (electron density)29.52 Å
Total Rg30.03 Å
Atom count4209
Residues538
Excluded volume73828 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 4fao__assembly_1__model_1 hexameric (6) Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 4fao__assembly_2__model_1 hexameric (6) Success 4.1.3-1-20251215 (887e7ef) View Download
3 1 4fao__assembly_3__model_1 hexameric (6) Success 4.1.3-1-20251215 (887e7ef) View Download
4 1 4fao__assembly_4__model_1 hexameric (6) Success 4.1.3-1-20251215 (887e7ef) View Download
5 1 4fao__assembly_5__model_1 hexameric (6) Success 4.1.3-1-20251215 (887e7ef) View Download
6 1 4fao__assembly_6__model_1 hexameric (6) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (5)

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6. Fold Classification (SCOP + CATH) 36 domains

CATH v4.4 (36 domains)

Domain ID domain_id4faoA00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology90 — Cystine Knot Cytokines, subunit B
Homologous superfamily homologous superfamily10 — Cystine-knot cytokines
Domain ID domain_id4faoB00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology90 — Cystine Knot Cytokines, subunit B
Homologous superfamily homologous superfamily10 — Cystine-knot cytokines
Domain ID domain_id4faoC00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology60 — CD59
Homologous superfamily homologous superfamily10 — CD59
Domain ID domain_id4faoD00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology60 — CD59
Homologous superfamily homologous superfamily10 — CD59
Domain ID domain_id4faoE00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology60 — CD59
Homologous superfamily homologous superfamily10 — CD59
Domain ID domain_id4faoF00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology60 — CD59
Homologous superfamily homologous superfamily10 — CD59
Domain ID domain_id4faoG00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology90 — Cystine Knot Cytokines, subunit B
Homologous superfamily homologous superfamily10 — Cystine-knot cytokines
Domain ID domain_id4faoH00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology90 — Cystine Knot Cytokines, subunit B
Homologous superfamily homologous superfamily10 — Cystine-knot cytokines
Domain ID domain_id4faoI00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology60 — CD59
Homologous superfamily homologous superfamily10 — CD59
Domain ID domain_id4faoJ00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology60 — CD59
Homologous superfamily homologous superfamily10 — CD59
Domain ID domain_id4faoK00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology60 — CD59
Homologous superfamily homologous superfamily10 — CD59
Domain ID domain_id4faoL00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology60 — CD59
Homologous superfamily homologous superfamily10 — CD59
Domain ID domain_id4faoM00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology90 — Cystine Knot Cytokines, subunit B
Homologous superfamily homologous superfamily10 — Cystine-knot cytokines
Domain ID domain_id4faoN00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology90 — Cystine Knot Cytokines, subunit B
Homologous superfamily homologous superfamily10 — Cystine-knot cytokines
Domain ID domain_id4faoO00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology60 — CD59
Homologous superfamily homologous superfamily10 — CD59
Domain ID domain_id4faoP00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology60 — CD59
Homologous superfamily homologous superfamily10 — CD59
Domain ID domain_id4faoQ00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology60 — CD59
Homologous superfamily homologous superfamily10 — CD59
Domain ID domain_id4faoR00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology60 — CD59
Homologous superfamily homologous superfamily10 — CD59
Domain ID domain_id4faoS00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology90 — Cystine Knot Cytokines, subunit B
Homologous superfamily homologous superfamily10 — Cystine-knot cytokines
Domain ID domain_id4faoT00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology90 — Cystine Knot Cytokines, subunit B
Homologous superfamily homologous superfamily10 — Cystine-knot cytokines
Domain ID domain_id4faoU00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology60 — CD59
Homologous superfamily homologous superfamily10 — CD59
Domain ID domain_id4faoV00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology60 — CD59
Homologous superfamily homologous superfamily10 — CD59
Domain ID domain_id4faoW00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology60 — CD59
Homologous superfamily homologous superfamily10 — CD59
Domain ID domain_id4faoX00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology60 — CD59
Homologous superfamily homologous superfamily10 — CD59
Domain ID domain_id4faoa00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology90 — Cystine Knot Cytokines, subunit B
Homologous superfamily homologous superfamily10 — Cystine-knot cytokines
Domain ID domain_id4faob00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology90 — Cystine Knot Cytokines, subunit B
Homologous superfamily homologous superfamily10 — Cystine-knot cytokines
Domain ID domain_id4faoc00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology60 — CD59
Homologous superfamily homologous superfamily10 — CD59
Domain ID domain_id4faod00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology60 — CD59
Homologous superfamily homologous superfamily10 — CD59
Domain ID domain_id4faoe00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology60 — CD59
Homologous superfamily homologous superfamily10 — CD59
Domain ID domain_id4faof00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology60 — CD59
Homologous superfamily homologous superfamily10 — CD59
Domain ID domain_id4faog00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology90 — Cystine Knot Cytokines, subunit B
Homologous superfamily homologous superfamily10 — Cystine-knot cytokines
Domain ID domain_id4faoh00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology90 — Cystine Knot Cytokines, subunit B
Homologous superfamily homologous superfamily10 — Cystine-knot cytokines
Domain ID domain_id4faoi00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology60 — CD59
Homologous superfamily homologous superfamily10 — CD59
Domain ID domain_id4faoj00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology60 — CD59
Homologous superfamily homologous superfamily10 — CD59
Domain ID domain_id4faok00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology60 — CD59
Homologous superfamily homologous superfamily10 — CD59
Domain ID domain_id4faol00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology60 — CD59
Homologous superfamily homologous superfamily10 — CD59
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7. Citations (1)