4gam

Complex structure of Methane monooxygenase hydroxylase and regulatory subunit

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Methane monooxygenase component A beta chain

OrganismNot specified

UniProt P18798

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 8 Methane monooxygenase component A alpha chain × 2 (P22869) Methane monooxygenase component A gamma chain × 2 (P11987) Methane monooxygenase regulatory protein B × 2 (P18797) FE (III) ION × 4 water × 6 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 8 Methane monooxygenase component A alpha chain × 2 (P22869) Methane monooxygenase component A gamma chain × 2 (P11987) Methane monooxygenase regulatory protein B × 2 (P18797) FE (III) ION × 4 water × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name MEMB_METCA
Isoform —
PDB entities 1
Chains and sequence ranges Author chain B; PDBConstruct 1–389; UniProt 1–389 Author chain G; PDBConstruct 1–389; UniProt 1–389 Author chain L; PDBConstruct 1–389; UniProt 1–389 Author chain Q; PDBConstruct 1–389; UniProt 1–389

Methane monooxygenase component A alpha chain

OrganismNot specified

UniProt P22869

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 8 Methane monooxygenase component A beta chain × 2 (P18798) Methane monooxygenase component A gamma chain × 2 (P11987) Methane monooxygenase regulatory protein B × 2 (P18797) FE (III) ION × 4 water × 6 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 8 Methane monooxygenase component A beta chain × 2 (P18798) Methane monooxygenase component A gamma chain × 2 (P11987) Methane monooxygenase regulatory protein B × 2 (P18797) FE (III) ION × 4 water × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name MEMA_METCA
Isoform —
PDB entities 2
Chains and sequence ranges Author chain A; PDBConstruct 1–527; UniProt 1–527 Author chain F; PDBConstruct 1–527; UniProt 1–527 Author chain K; PDBConstruct 1–527; UniProt 1–527 Author chain P; PDBConstruct 1–527; UniProt 1–527

Methane monooxygenase component A gamma chain

OrganismNot specified

UniProt P11987

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 8 Methane monooxygenase component A beta chain × 2 (P18798) Methane monooxygenase component A alpha chain × 2 (P22869) Methane monooxygenase regulatory protein B × 2 (P18797) FE (III) ION × 4 water × 6 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 8 Methane monooxygenase component A beta chain × 2 (P18798) Methane monooxygenase component A alpha chain × 2 (P22869) Methane monooxygenase regulatory protein B × 2 (P18797) FE (III) ION × 4 water × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name MEMG_METCA
Isoform —
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–170; UniProt 1–170 Author chain H; PDBConstruct 1–170; UniProt 1–170 Author chain M; PDBConstruct 1–170; UniProt 1–170 Author chain R; PDBConstruct 1–170; UniProt 1–170

Methane monooxygenase regulatory protein B

Methylococcus capsulatus

UniProt P18797

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 8 Methane monooxygenase component A beta chain × 2 (P18798) Methane monooxygenase component A alpha chain × 2 (P22869) Methane monooxygenase component A gamma chain × 2 (P11987) FE (III) ION × 4 water × 6 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 8 Methane monooxygenase component A beta chain × 2 (P18798) Methane monooxygenase component A alpha chain × 2 (P22869) Methane monooxygenase component A gamma chain × 2 (P11987) FE (III) ION × 4 water × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name MMOB_METCA
Isoform —
PDB entities 4
Chains and sequence ranges Author chain D; PDBConstruct 1–141; UniProt 1–141 Author chain I; PDBConstruct 1–141; UniProt 1–141 Author chain N; PDBConstruct 1–141; UniProt 1–141 Author chain S; PDBConstruct 1–141; UniProt 1–141

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id4gam
Deposition date deposition_date2012-07-25
Structure title titleComplex structure of Methane monooxygenase hydroxylase and regulatory subunit
Keywords keywordsMethane Monooxygenase, hydroxylase, regulatory subunit B, OXIDOREDUCTASE; OXIDOREDUCTASE
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

4gam__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

4gam__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

4gam__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)40.62 Å
Rg (electron density)40.16 Å
Total Rg40.57 Å
Atom count19550
Residues2394
Excluded volume345310 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 4gam__assembly_1__model_1 octameric (8) Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 4gam__assembly_2__model_1 octameric (8) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (6)

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6. Fold Classification (SCOP + CATH) 36 domains

SCOP 2.08 (16 domains)

Domain ID domain_idd4gama_
Class classa — All alpha proteins
Fold Fold folda.25 — Ferritin-like
Superfamily Superfamily superfamilya.25.1 — Ferritin-like
Family Family familya.25.1.2 — Ribonucleotide reductase-like
Domain ID domain_idd4gamb_
Class classa — All alpha proteins
Fold Fold folda.25 — Ferritin-like
Superfamily Superfamily superfamilya.25.1 — Ferritin-like
Family Family familya.25.1.2 — Ribonucleotide reductase-like
Domain ID domain_idd4gamc_
Class classa — All alpha proteins
Fold Fold folda.23 — Open three-helical up-and-down bundle
Superfamily Superfamily superfamilya.23.3 — Methane monooxygenase hydrolase, gamma subunit
Family Family familya.23.3.1 — Methane monooxygenase hydrolase, gamma subunit
Domain ID domain_idd4gamd_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.137 — Monooxygenase (hydroxylase) regulatory protein
Superfamily Superfamily superfamilyd.137.1 — Monooxygenase (hydroxylase) regulatory protein
Family Family familyd.137.1.1 — Monooxygenase (hydroxylase) regulatory protein
Domain ID domain_idd4gamf_
Class classa — All alpha proteins
Fold Fold folda.25 — Ferritin-like
Superfamily Superfamily superfamilya.25.1 — Ferritin-like
Family Family familya.25.1.2 — Ribonucleotide reductase-like
Domain ID domain_idd4gamg_
Class classa — All alpha proteins
Fold Fold folda.25 — Ferritin-like
Superfamily Superfamily superfamilya.25.1 — Ferritin-like
Family Family familya.25.1.2 — Ribonucleotide reductase-like
Domain ID domain_idd4gamh_
Class classa — All alpha proteins
Fold Fold folda.23 — Open three-helical up-and-down bundle
Superfamily Superfamily superfamilya.23.3 — Methane monooxygenase hydrolase, gamma subunit
Family Family familya.23.3.1 — Methane monooxygenase hydrolase, gamma subunit
Domain ID domain_idd4gami_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.137 — Monooxygenase (hydroxylase) regulatory protein
Superfamily Superfamily superfamilyd.137.1 — Monooxygenase (hydroxylase) regulatory protein
Family Family familyd.137.1.1 — Monooxygenase (hydroxylase) regulatory protein
Domain ID domain_idd4gamk_
Class classa — All alpha proteins
Fold Fold folda.25 — Ferritin-like
Superfamily Superfamily superfamilya.25.1 — Ferritin-like
Family Family familya.25.1.2 — Ribonucleotide reductase-like
Domain ID domain_idd4gaml_
Class classa — All alpha proteins
Fold Fold folda.25 — Ferritin-like
Superfamily Superfamily superfamilya.25.1 — Ferritin-like
Family Family familya.25.1.2 — Ribonucleotide reductase-like
Domain ID domain_idd4gamm_
Class classa — All alpha proteins
Fold Fold folda.23 — Open three-helical up-and-down bundle
Superfamily Superfamily superfamilya.23.3 — Methane monooxygenase hydrolase, gamma subunit
Family Family familya.23.3.1 — Methane monooxygenase hydrolase, gamma subunit
Domain ID domain_idd4gamn_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.137 — Monooxygenase (hydroxylase) regulatory protein
Superfamily Superfamily superfamilyd.137.1 — Monooxygenase (hydroxylase) regulatory protein
Family Family familyd.137.1.1 — Monooxygenase (hydroxylase) regulatory protein
Domain ID domain_idd4gamp_
Class classa — All alpha proteins
Fold Fold folda.25 — Ferritin-like
Superfamily Superfamily superfamilya.25.1 — Ferritin-like
Family Family familya.25.1.2 — Ribonucleotide reductase-like
Domain ID domain_idd4gamq_
Class classa — All alpha proteins
Fold Fold folda.25 — Ferritin-like
Superfamily Superfamily superfamilya.25.1 — Ferritin-like
Family Family familya.25.1.2 — Ribonucleotide reductase-like
Domain ID domain_idd4gamr_
Class classa — All alpha proteins
Fold Fold folda.23 — Open three-helical up-and-down bundle
Superfamily Superfamily superfamilya.23.3 — Methane monooxygenase hydrolase, gamma subunit
Family Family familya.23.3.1 — Methane monooxygenase hydrolase, gamma subunit
Domain ID domain_idd4gams_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.137 — Monooxygenase (hydroxylase) regulatory protein
Superfamily Superfamily superfamilyd.137.1 — Monooxygenase (hydroxylase) regulatory protein
Family Family familyd.137.1.1 — Monooxygenase (hydroxylase) regulatory protein

CATH v4.4 (20 domains)

Domain ID domain_id4gamA00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology620 — Ribonucleotide Reductase, subunit A
Homologous superfamily homologous superfamily20 — Ribonucleotide Reductase, subunit A
Domain ID domain_id4gamB00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology620 — Ribonucleotide Reductase, subunit A
Homologous superfamily homologous superfamily20 — Ribonucleotide Reductase, subunit A
Domain ID domain_id4gamC01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1280 — Monooxygenase
Homologous superfamily homologous superfamily10 — Methane monooxygenase, gamma chain, domain 1
Domain ID domain_id4gamC02
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1280 — Monooxygenase
Homologous superfamily homologous superfamily30 — Methane monooxygenase, gamma chain, domain 2
Domain ID domain_id4gamD00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology56 — Phenol Hydroxylase P2 Protein
Homologous superfamily homologous superfamily10 — Monooxygenase component MmoB/DmpM
Domain ID domain_id4gamF00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology620 — Ribonucleotide Reductase, subunit A
Homologous superfamily homologous superfamily20 — Ribonucleotide Reductase, subunit A
Domain ID domain_id4gamG00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology620 — Ribonucleotide Reductase, subunit A
Homologous superfamily homologous superfamily20 — Ribonucleotide Reductase, subunit A
Domain ID domain_id4gamH01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1280 — Monooxygenase
Homologous superfamily homologous superfamily10 — Methane monooxygenase, gamma chain, domain 1
Domain ID domain_id4gamH02
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1280 — Monooxygenase
Homologous superfamily homologous superfamily30 — Methane monooxygenase, gamma chain, domain 2
Domain ID domain_id4gamI00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology56 — Phenol Hydroxylase P2 Protein
Homologous superfamily homologous superfamily10 — Monooxygenase component MmoB/DmpM
Domain ID domain_id4gamK00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology620 — Ribonucleotide Reductase, subunit A
Homologous superfamily homologous superfamily20 — Ribonucleotide Reductase, subunit A
Domain ID domain_id4gamL00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology620 — Ribonucleotide Reductase, subunit A
Homologous superfamily homologous superfamily20 — Ribonucleotide Reductase, subunit A
Domain ID domain_id4gamM01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1280 — Monooxygenase
Homologous superfamily homologous superfamily10 — Methane monooxygenase, gamma chain, domain 1
Domain ID domain_id4gamM02
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1280 — Monooxygenase
Homologous superfamily homologous superfamily30 — Methane monooxygenase, gamma chain, domain 2
Domain ID domain_id4gamN00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology56 — Phenol Hydroxylase P2 Protein
Homologous superfamily homologous superfamily10 — Monooxygenase component MmoB/DmpM
Domain ID domain_id4gamP00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology620 — Ribonucleotide Reductase, subunit A
Homologous superfamily homologous superfamily20 — Ribonucleotide Reductase, subunit A
Domain ID domain_id4gamQ00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology620 — Ribonucleotide Reductase, subunit A
Homologous superfamily homologous superfamily20 — Ribonucleotide Reductase, subunit A
Domain ID domain_id4gamR01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1280 — Monooxygenase
Homologous superfamily homologous superfamily10 — Methane monooxygenase, gamma chain, domain 1
Domain ID domain_id4gamR02
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1280 — Monooxygenase
Homologous superfamily homologous superfamily30 — Methane monooxygenase, gamma chain, domain 2
Domain ID domain_id4gamS00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology56 — Phenol Hydroxylase P2 Protein
Homologous superfamily homologous superfamily10 — Monooxygenase component MmoB/DmpM
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7. Citations (1)