4hck

HUMAN HCK SH3 DOMAIN, NMR, 25 STRUCTURES

Method: SOLUTION NMR Dmax: 38.1 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

HEMATOPOIETIC CELL KINASE

Homo sapiens

UniProt P08631

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 72–143 Fragment:SH3 DOMAIN No other associated polymer SOLUTION NMR NMR measurement conditions:pH 6.25;298 K Resolution not provided

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

39 other PDB entries and 59 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name HCK_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–72; UniProt 72–143

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 4hck

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 4hck
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2. Structure Basics 2. Structure Basics

Entry ID entry_id4hck
Deposition date deposition_date1998-03-09
Structure title titleHUMAN HCK SH3 DOMAIN, NMR, 25 STRUCTURES
Keywords keywordsSH3, PROTEIN TYROSINE KINASE, SIGNAL TRANSDUCTION, TRANSFERASE; TRANSFERASE
Experimental Method methodSOLUTION NMR

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier11.11
Radius of gyration Rg (electron density) rg_electron10.81
Forward intensity I(0) i0435264000.00
Molecular weight molecular_weight175570.0 kDa
Excluded volume excluded_volume218520 ų
Envelope volume envelope_volume14121 ų
Hydration-shell volume shell_volume9889 ų
Envelope diameter envelope_diameter44.0
Shell Rg shell_rg17.89
Envelope Rg envelope_rg12.82
Shape Rg shape_rg10.80
Total Rg total_rg10.98
Total atoms total_atoms24175
Residues n_residues1525
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax38.1
Rg (real space) rg_real11.06
Rg uncertainty (real space) rg_real_error0.29
I(0) (real space) i0_real4.3530e+08
I(0) uncertainty (real space) i0_real_error4.7430e+06
Rg (reciprocal space) rg_reciprocal11.06
I(0) (reciprocal space) i0_reciprocal435300000.0000
Solution quality estimate total_estimate0.8479
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary15.0
Skewness Skewness skewness0.144
Kurtosis Kurtosis kurtosis-0.105
Angular range angular_range— – 0.5000 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha67880.0000
Real-space data points n_real_points80
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.686; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.962

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (1)

7. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd4hcka_
Class classb — All beta proteins
Fold Fold foldb.34 — SH3-like barrel
Superfamily Superfamily superfamilyb.34.2 — SH3-domain
Family Family familyb.34.2.1 — SH3-domain

CATH v4.4 (1 domains)

Domain ID domain_id4hckA00
Class class2 — Mainly Beta
Architecture architecture30 — Roll
Topology topology30 — SH3 type barrels.
Homologous superfamily homologous superfamily40 — SH3 Domains

8. Citations (1)

9. Files and Curves (10)