4he8

Crystal structure of the membrane domain of respiratory complex I from Thermus thermophilus

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

NADH-quinone oxidoreductase subunit 7

OrganismNot specified

UniProt Q56217

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 7 NADH-quinone oxidoreductase subunit 10 × 1 (Q56225) NADH-quinone oxidoreductase subunit 11 × 1 (Q56226) NADH-quinone oxidoreductase subunit 12 × 1 (Q56227) NADH-quinone oxidoreductase subunit 13 × 1 (Q56228) NADH-quinone oxidoreductase subunit 14 × 1 (Q56229) NADH-quinone oxidoreductase subunit 8 × 1 (Q60019) UNDECYL-MALTOSIDE × 2 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 7 NADH-quinone oxidoreductase subunit 10 × 1 (Q56225) NADH-quinone oxidoreductase subunit 11 × 1 (Q56226) NADH-quinone oxidoreductase subunit 12 × 1 (Q56227) NADH-quinone oxidoreductase subunit 13 × 1 (Q56228) NADH-quinone oxidoreductase subunit 14 × 1 (Q56229) NADH-quinone oxidoreductase subunit 8 × 1 (Q60019) UNDECYL-MALTOSIDE × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NQO7_THET8
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–119; UniProt 1–119 Author chain B; PDBConstruct 1–119; UniProt 1–119

NADH-quinone oxidoreductase subunit 10

OrganismNot specified

UniProt Q56225

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 7 NADH-quinone oxidoreductase subunit 7 × 1 (Q56217) NADH-quinone oxidoreductase subunit 11 × 1 (Q56226) NADH-quinone oxidoreductase subunit 12 × 1 (Q56227) NADH-quinone oxidoreductase subunit 13 × 1 (Q56228) NADH-quinone oxidoreductase subunit 14 × 1 (Q56229) NADH-quinone oxidoreductase subunit 8 × 1 (Q60019) UNDECYL-MALTOSIDE × 2 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 7 NADH-quinone oxidoreductase subunit 7 × 1 (Q56217) NADH-quinone oxidoreductase subunit 11 × 1 (Q56226) NADH-quinone oxidoreductase subunit 12 × 1 (Q56227) NADH-quinone oxidoreductase subunit 13 × 1 (Q56228) NADH-quinone oxidoreductase subunit 14 × 1 (Q56229) NADH-quinone oxidoreductase subunit 8 × 1 (Q60019) UNDECYL-MALTOSIDE × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NQO10_THET8
Isoform —
PDB entities 2
Chains and sequence ranges Author chain D; PDBConstruct 1–176; UniProt 1–176 Author chain J; PDBConstruct 1–176; UniProt 1–176

NADH-quinone oxidoreductase subunit 11

OrganismNot specified

UniProt Q56226

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 7 NADH-quinone oxidoreductase subunit 7 × 1 (Q56217) NADH-quinone oxidoreductase subunit 10 × 1 (Q56225) NADH-quinone oxidoreductase subunit 12 × 1 (Q56227) NADH-quinone oxidoreductase subunit 13 × 1 (Q56228) NADH-quinone oxidoreductase subunit 14 × 1 (Q56229) NADH-quinone oxidoreductase subunit 8 × 1 (Q60019) UNDECYL-MALTOSIDE × 2 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 7 NADH-quinone oxidoreductase subunit 7 × 1 (Q56217) NADH-quinone oxidoreductase subunit 10 × 1 (Q56225) NADH-quinone oxidoreductase subunit 12 × 1 (Q56227) NADH-quinone oxidoreductase subunit 13 × 1 (Q56228) NADH-quinone oxidoreductase subunit 14 × 1 (Q56229) NADH-quinone oxidoreductase subunit 8 × 1 (Q60019) UNDECYL-MALTOSIDE × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NQO11_THET8
Isoform —
PDB entities 3
Chains and sequence ranges Author chain E; PDBConstruct 1–95; UniProt 1–95 Author chain K; PDBConstruct 1–95; UniProt 1–95

NADH-quinone oxidoreductase subunit 12

OrganismNot specified

UniProt Q56227

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 7 NADH-quinone oxidoreductase subunit 7 × 1 (Q56217) NADH-quinone oxidoreductase subunit 10 × 1 (Q56225) NADH-quinone oxidoreductase subunit 11 × 1 (Q56226) NADH-quinone oxidoreductase subunit 13 × 1 (Q56228) NADH-quinone oxidoreductase subunit 14 × 1 (Q56229) NADH-quinone oxidoreductase subunit 8 × 1 (Q60019) UNDECYL-MALTOSIDE × 2 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 7 NADH-quinone oxidoreductase subunit 7 × 1 (Q56217) NADH-quinone oxidoreductase subunit 10 × 1 (Q56225) NADH-quinone oxidoreductase subunit 11 × 1 (Q56226) NADH-quinone oxidoreductase subunit 13 × 1 (Q56228) NADH-quinone oxidoreductase subunit 14 × 1 (Q56229) NADH-quinone oxidoreductase subunit 8 × 1 (Q60019) UNDECYL-MALTOSIDE × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NQO12_THET8
Isoform —
PDB entities 4
Chains and sequence ranges Author chain F; PDBConstruct 1–606; UniProt 1–606 Author chain L; PDBConstruct 1–606; UniProt 1–606

NADH-quinone oxidoreductase subunit 13

OrganismNot specified

UniProt Q56228

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 7 NADH-quinone oxidoreductase subunit 7 × 1 (Q56217) NADH-quinone oxidoreductase subunit 10 × 1 (Q56225) NADH-quinone oxidoreductase subunit 11 × 1 (Q56226) NADH-quinone oxidoreductase subunit 12 × 1 (Q56227) NADH-quinone oxidoreductase subunit 14 × 1 (Q56229) NADH-quinone oxidoreductase subunit 8 × 1 (Q60019) UNDECYL-MALTOSIDE × 2 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 7 NADH-quinone oxidoreductase subunit 7 × 1 (Q56217) NADH-quinone oxidoreductase subunit 10 × 1 (Q56225) NADH-quinone oxidoreductase subunit 11 × 1 (Q56226) NADH-quinone oxidoreductase subunit 12 × 1 (Q56227) NADH-quinone oxidoreductase subunit 14 × 1 (Q56229) NADH-quinone oxidoreductase subunit 8 × 1 (Q60019) UNDECYL-MALTOSIDE × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NQO13_THET8
Isoform —
PDB entities 5
Chains and sequence ranges Author chain G; PDBConstruct 1–469; UniProt 1–469 Author chain M; PDBConstruct 1–469; UniProt 1–469

NADH-quinone oxidoreductase subunit 14

OrganismNot specified

UniProt Q56229

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 7 NADH-quinone oxidoreductase subunit 7 × 1 (Q56217) NADH-quinone oxidoreductase subunit 10 × 1 (Q56225) NADH-quinone oxidoreductase subunit 11 × 1 (Q56226) NADH-quinone oxidoreductase subunit 12 × 1 (Q56227) NADH-quinone oxidoreductase subunit 13 × 1 (Q56228) NADH-quinone oxidoreductase subunit 8 × 1 (Q60019) UNDECYL-MALTOSIDE × 2 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 7 NADH-quinone oxidoreductase subunit 7 × 1 (Q56217) NADH-quinone oxidoreductase subunit 10 × 1 (Q56225) NADH-quinone oxidoreductase subunit 11 × 1 (Q56226) NADH-quinone oxidoreductase subunit 12 × 1 (Q56227) NADH-quinone oxidoreductase subunit 13 × 1 (Q56228) NADH-quinone oxidoreductase subunit 8 × 1 (Q60019) UNDECYL-MALTOSIDE × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NQO14_THET8
Isoform —
PDB entities 6
Chains and sequence ranges Author chain I; PDBConstruct 1–427; UniProt 1–427 Author chain N; PDBConstruct 1–427; UniProt 1–427

NADH-quinone oxidoreductase subunit 8

OrganismNot specified

UniProt Q60019

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 7 NADH-quinone oxidoreductase subunit 7 × 1 (Q56217) NADH-quinone oxidoreductase subunit 10 × 1 (Q56225) NADH-quinone oxidoreductase subunit 11 × 1 (Q56226) NADH-quinone oxidoreductase subunit 12 × 1 (Q56227) NADH-quinone oxidoreductase subunit 13 × 1 (Q56228) NADH-quinone oxidoreductase subunit 14 × 1 (Q56229) UNDECYL-MALTOSIDE × 2 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 7 NADH-quinone oxidoreductase subunit 7 × 1 (Q56217) NADH-quinone oxidoreductase subunit 10 × 1 (Q56225) NADH-quinone oxidoreductase subunit 11 × 1 (Q56226) NADH-quinone oxidoreductase subunit 12 × 1 (Q56227) NADH-quinone oxidoreductase subunit 13 × 1 (Q56228) NADH-quinone oxidoreductase subunit 14 × 1 (Q56229) UNDECYL-MALTOSIDE × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NQO8_THET8
Isoform —
PDB entities 7
Chains and sequence ranges Author chain C; PDBConstruct 1–365; UniProt 1–365 Author chain H; PDBConstruct 1–365; UniProt 1–365

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id4he8
Deposition date deposition_date2012-10-03
Structure title titleCrystal structure of the membrane domain of respiratory complex I from Thermus thermophilus
Keywords keywordsNADH-quinone oxidoreductase, complex I, oxidoreductase, proton pump, membrane protein, NADH, menaquinone, cytoplasmic membrane; OXIDOREDUCTASE
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

4he8__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

4he8__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

4he8__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)52.24 Å
Rg (electron density)53.30 Å
Total Rg52.95 Å
Atom count16325
Residues2143
Excluded volume301560 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 4he8__assembly_1__model_1 heptameric (7) Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 4he8__assembly_2__model_1 heptameric (7) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (8)

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6. Fold Classification (SCOP + CATH) 15 domains

SCOP 2.08 (7 domains)

Domain ID domain_idd4he8a_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.73 — Non-antiporter membrane subunits from respiratory complex I
Superfamily Superfamily superfamilyf.73.3 — Respiratory complex I subunit NuoA-like
Family Family familyf.73.3.1 — Respiratory complex I subunit NuoA-like
Domain ID domain_idd4he8c_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.72 — Antiporter-like subunits from respiratory complex I
Superfamily Superfamily superfamilyf.72.1 — Antiporter-like subunits from respiratory complex I
Family Family familyf.72.1.2 — Single antiporter-like subunits from respiratory complex I
Domain ID domain_idd4he8j_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.73 — Non-antiporter membrane subunits from respiratory complex I
Superfamily Superfamily superfamilyf.73.2 — Respiratory complex I subunit NuoJ-like
Family Family familyf.73.2.1 — Respiratory complex I subunit NuoJ-like
Domain ID domain_idd4he8k_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.73 — Non-antiporter membrane subunits from respiratory complex I
Superfamily Superfamily superfamilyf.73.1 — Respiratory complex I subunit NuoK-like
Family Family familyf.73.1.1 — Respiratory complex I subunit NuoK-like
Domain ID domain_idd4he8l_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.72 — Antiporter-like subunits from respiratory complex I
Superfamily Superfamily superfamilyf.72.1 — Antiporter-like subunits from respiratory complex I
Family Family familyf.72.1.1 — Double antiporter-like subunits from respiratory complex I
Domain ID domain_idd4he8m_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.72 — Antiporter-like subunits from respiratory complex I
Superfamily Superfamily superfamilyf.72.1 — Antiporter-like subunits from respiratory complex I
Family Family familyf.72.1.1 — Double antiporter-like subunits from respiratory complex I
Domain ID domain_idd4he8n_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.72 — Antiporter-like subunits from respiratory complex I
Superfamily Superfamily superfamilyf.72.1 — Antiporter-like subunits from respiratory complex I
Family Family familyf.72.1.1 — Double antiporter-like subunits from respiratory complex I

CATH v4.4 (8 domains)

Domain ID domain_id4he8A00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1
Homologous superfamily homologous superfamily1610 — NADH:ubiquinone/plastoquinone oxidoreductase, chain 3
Domain ID domain_id4he8B00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1
Homologous superfamily homologous superfamily1610 — NADH:ubiquinone/plastoquinone oxidoreductase, chain 3
Domain ID domain_id4he8D00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology120 — Four Helix Bundle (Hemerythrin (Met), subunit A)
Homologous superfamily homologous superfamily1200 — NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ
Domain ID domain_id4he8E00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily3510 —
Domain ID domain_id4he8F02
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily2700 —
Domain ID domain_id4he8J00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology120 — Four Helix Bundle (Hemerythrin (Met), subunit A)
Homologous superfamily homologous superfamily1200 — NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ
Domain ID domain_id4he8K00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily3510 —
Domain ID domain_id4he8L02
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily2700 —
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7. Citations (1)