4l2w

Crystal structure of the Shroom-Binding domain of human Rock1

Method: X-RAY DIFFRACTION Dmax: 157.8 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Rho-associated protein kinase 1

Homo sapiens

UniProt Q13464

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain C; UniProt 834–914 Chain D; UniProt 834–914 Fragment:Shroom binding Domain (UNP residues 834-914) Mutation:E884A, K885A, E886A No other associated polymer X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION;pH 6;277 K;0.1M Citrate, 1.0M Ammonium Sulfate, pH 6.0, VAPOR DIFFUSION, temperature 277K Resolution 2.49 Å R-free 0.276
2 Protein homooligomer Homooligomer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 834–914 Chain B; UniProt 834–914 Fragment:Shroom binding Domain (UNP residues 834-914) Mutation:E884A, K885A, E886A No other associated polymer X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION;pH 6;277 K;0.1M Citrate, 1.0M Ammonium Sulfate, pH 6.0, VAPOR DIFFUSION, temperature 277K Resolution 2.49 Å R-free 0.276

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

31 other PDB entries and 47 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ROCK1_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 7–87; UniProt 834–914 Author chain B; PDBConstruct 7–87; UniProt 834–914 Author chain C; PDBConstruct 7–87; UniProt 834–914 Author chain D; PDBConstruct 7–87; UniProt 834–914

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 4l2w

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 4l2w
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2. Structure Basics 2. Structure Basics

Entry ID entry_id4l2w
Deposition date deposition_date2013-06-04
Structure title titleCrystal structure of the Shroom-Binding domain of human Rock1
Keywords keywordscoiled-coil, Shroom SD2, kinase, myosin, PROTEIN BINDING; PROTEIN BINDING
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier37.47
Radius of gyration Rg (electron density) rg_electron39.42
Forward intensity I(0) i017394300.00
Molecular weight molecular_weight31393.0 kDa
Excluded volume excluded_volume38932 ų
Envelope volume envelope_volume55720 ų
Hydration-shell volume shell_volume16469 ų
Envelope diameter envelope_diameter155.4
Shell Rg shell_rg30.91
Envelope Rg envelope_rg41.43
Shape Rg shape_rg39.37
Total Rg total_rg38.83
Total atoms total_atoms4364
Residues n_residues269
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax157.8
Rg (real space) rg_real39.04
Rg uncertainty (real space) rg_real_error3.10
I(0) (real space) i0_real1.7390e+07
I(0) uncertainty (real space) i0_real_error3.4680e+05
Rg (reciprocal space) rg_reciprocal38.05
I(0) (reciprocal space) i0_reciprocal17380000.0000
Solution quality estimate total_estimate0.5930
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary18.8
Skewness Skewness skewness0.851
Kurtosis Kurtosis kurtosis0.147
Angular range angular_range— – 0.2100 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha675900.0000
Real-space data points n_real_points43
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.015; Stabil: 0.998; Sysdev: 1.000; Positv: 1.000; Valcen: 0.004; Smooth: 0.663

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (2)

8. Citations (1)

9. Files and Curves (10)