4ny0

Crystal structure of FERM domain of human focal adhesion kinase

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

Focal adhesion kinase 1

Homo sapiens

UniProt Q05397

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白同源多聚体 同源多聚体 蛋白 2 无其他共同聚合物 与蛋白数一致
2 蛋白同源多聚体 同源多聚体 蛋白 2 无其他共同聚合物 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 FAK1_HUMAN
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 2–376; UniProt 31–405 作者链 B; PDB构建体 2–376; UniProt 31–405 作者链 C; PDB构建体 2–376; UniProt 31–405 作者链 D; PDB构建体 2–376; UniProt 31–405

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id4ny0
沉积日期 deposition_date2013-12-10
结构标题 titleCrystal structure of FERM domain of human focal adhesion kinase
关键词 keywordsFERM domain, focal adhesion kinase, focal targeting domain, integrin signaling, TRANSFERASE; TRANSFERASE
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

4ny0__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

4ny0__assembly_1__model_1 | I(q)

10-2 10-1 106 107 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

4ny0__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)30.50 Å
Rg(电子密度)30.01 Å
总 Rg30.76 Å
原子数5336
残基数658
排除体积95324 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 4ny0__assembly_1__model_1 dimeric (2) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
2 1 4ny0__assembly_2__model_1 dimeric (2) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (1)

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6. 折叠分类 (SCOP + CATH) 21 domains

SCOP 2.08 (9 domains)

结构域编号 domain_idd4ny0a1
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.15 — beta-Grasp (ubiquitin-like)
超家族 Superfamily superfamilyd.15.1 — Ubiquitin-like
家族 Family familyd.15.1.0 — automated matches
结构域编号 domain_idd4ny0a2
类 Class classa — All alpha proteins
折叠类型 Fold folda.11 — Acyl-CoA binding protein-like
超家族 Superfamily superfamilya.11.2 — Second domain of FERM
家族 Family familya.11.2.0 — automated matches
结构域编号 domain_idd4ny0a3
类 Class classb — All beta proteins
折叠类型 Fold foldb.55 — PH domain-like barrel
超家族 Superfamily superfamilyb.55.1 — PH domain-like
家族 Family familyb.55.1.0 — automated matches
结构域编号 domain_idd4ny0b1
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.15 — beta-Grasp (ubiquitin-like)
超家族 Superfamily superfamilyd.15.1 — Ubiquitin-like
家族 Family familyd.15.1.0 — automated matches
结构域编号 domain_idd4ny0b2
类 Class classa — All alpha proteins
折叠类型 Fold folda.11 — Acyl-CoA binding protein-like
超家族 Superfamily superfamilya.11.2 — Second domain of FERM
家族 Family familya.11.2.0 — automated matches
结构域编号 domain_idd4ny0b3
类 Class classb — All beta proteins
折叠类型 Fold foldb.55 — PH domain-like barrel
超家族 Superfamily superfamilyb.55.1 — PH domain-like
家族 Family familyb.55.1.0 — automated matches
结构域编号 domain_idd4ny0d1
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.15 — beta-Grasp (ubiquitin-like)
超家族 Superfamily superfamilyd.15.1 — Ubiquitin-like
家族 Family familyd.15.1.0 — automated matches
结构域编号 domain_idd4ny0d2
类 Class classa — All alpha proteins
折叠类型 Fold folda.11 — Acyl-CoA binding protein-like
超家族 Superfamily superfamilya.11.2 — Second domain of FERM
家族 Family familya.11.2.0 — automated matches
结构域编号 domain_idd4ny0d3
类 Class classb — All beta proteins
折叠类型 Fold foldb.55 — PH domain-like barrel
超家族 Superfamily superfamilyb.55.1 — PH domain-like
家族 Family familyb.55.1.0 — automated matches

CATH v4.4 (12 domains)

结构域编号 domain_id4ny0A01
类 Class class3 — Alpha Beta
架构 Architecture architecture10 — Roll
拓扑 Topology topology20 — Ubiquitin-like (UB roll)
同源超家族 H-superfamily homologous superfamily90 — Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
结构域编号 domain_id4ny0A02
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology80 — Acyl-CoA Binding Protein
同源超家族 H-superfamily homologous superfamily10 —
结构域编号 domain_id4ny0A03
类 Class class2 — Mainly Beta
架构 Architecture architecture30 — Roll
拓扑 Topology topology29 — PH-domain like
同源超家族 H-superfamily homologous superfamily30 — Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)
结构域编号 domain_id4ny0B01
类 Class class3 — Alpha Beta
架构 Architecture architecture10 — Roll
拓扑 Topology topology20 — Ubiquitin-like (UB roll)
同源超家族 H-superfamily homologous superfamily90 — Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
结构域编号 domain_id4ny0B02
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology80 — Acyl-CoA Binding Protein
同源超家族 H-superfamily homologous superfamily10 —
结构域编号 domain_id4ny0B03
类 Class class2 — Mainly Beta
架构 Architecture architecture30 — Roll
拓扑 Topology topology29 — PH-domain like
同源超家族 H-superfamily homologous superfamily30 — Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)
结构域编号 domain_id4ny0C01
类 Class class3 — Alpha Beta
架构 Architecture architecture10 — Roll
拓扑 Topology topology20 — Ubiquitin-like (UB roll)
同源超家族 H-superfamily homologous superfamily90 — Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
结构域编号 domain_id4ny0C02
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology80 — Acyl-CoA Binding Protein
同源超家族 H-superfamily homologous superfamily10 —
结构域编号 domain_id4ny0C03
类 Class class2 — Mainly Beta
架构 Architecture architecture30 — Roll
拓扑 Topology topology29 — PH-domain like
同源超家族 H-superfamily homologous superfamily30 — Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)
结构域编号 domain_id4ny0D01
类 Class class3 — Alpha Beta
架构 Architecture architecture10 — Roll
拓扑 Topology topology20 — Ubiquitin-like (UB roll)
同源超家族 H-superfamily homologous superfamily90 — Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
结构域编号 domain_id4ny0D02
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology80 — Acyl-CoA Binding Protein
同源超家族 H-superfamily homologous superfamily10 —
结构域编号 domain_id4ny0D03
类 Class class2 — Mainly Beta
架构 Architecture architecture30 — Roll
拓扑 Topology topology29 — PH-domain like
同源超家族 H-superfamily homologous superfamily30 — Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)
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7. 引用文献 (1)