4s20

Structural basis for transcription reactivation by RapA

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

DNA-directed RNA polymerase subunit alpha

Escherichia coli

UniProt B1X6E7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 6 DNA 1 RNA 1 DNA-directed RNA polymerase subunit beta × 1 (K0AVA1) ;DNA-directed RNA polymerase subunit beta' ; × 1 (K0BCS5) DNA-directed RNA polymerase subunit omega × 1 (K0BU55) RNA polymerase-associated protein RapA × 1 (P60240) 5'-D(P*AP*CP*GP*AP*CP*TP*GP*AP*GP*CP*CP*GP*AP*TP*G)-3' × 1 5'-R(P*AP*UP*CP*GP*GP*CP*UP*CP*A)-3' × 1 ZINC ION × 2 MAGNESIUM ION × 1 Consistent with all polymers
2 Other combination Heteromer Protein 6 DNA 1 RNA 1 DNA-directed RNA polymerase subunit beta × 1 (K0AVA1) ;DNA-directed RNA polymerase subunit beta' ; × 1 (K0BCS5) DNA-directed RNA polymerase subunit omega × 1 (K0BU55) RNA polymerase-associated protein RapA × 1 (P60240) 5'-D(P*AP*CP*GP*AP*CP*TP*GP*AP*GP*CP*CP*GP*AP*TP*G)-3' × 1 5'-R(P*AP*UP*CP*GP*GP*CP*UP*CP*A)-3' × 1 ZINC ION × 2 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name B1X6E7_ECODH
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–329; UniProt 1–329 Author chain B; PDBConstruct 1–329; UniProt 1–329 Author chain F; PDBConstruct 1–329; UniProt 1–329 Author chain G; PDBConstruct 1–329; UniProt 1–329

DNA-directed RNA polymerase subunit beta

Escherichia coli

UniProt K0AVA1

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 6 DNA 1 RNA 1 DNA-directed RNA polymerase subunit alpha × 2 (B1X6E7) ;DNA-directed RNA polymerase subunit beta' ; × 1 (K0BCS5) DNA-directed RNA polymerase subunit omega × 1 (K0BU55) RNA polymerase-associated protein RapA × 1 (P60240) 5'-D(P*AP*CP*GP*AP*CP*TP*GP*AP*GP*CP*CP*GP*AP*TP*G)-3' × 1 5'-R(P*AP*UP*CP*GP*GP*CP*UP*CP*A)-3' × 1 ZINC ION × 2 MAGNESIUM ION × 1 Consistent with all polymers
2 Other combination Heteromer Protein 6 DNA 1 RNA 1 DNA-directed RNA polymerase subunit alpha × 2 (B1X6E7) ;DNA-directed RNA polymerase subunit beta' ; × 1 (K0BCS5) DNA-directed RNA polymerase subunit omega × 1 (K0BU55) RNA polymerase-associated protein RapA × 1 (P60240) 5'-D(P*AP*CP*GP*AP*CP*TP*GP*AP*GP*CP*CP*GP*AP*TP*G)-3' × 1 5'-R(P*AP*UP*CP*GP*GP*CP*UP*CP*A)-3' × 1 ZINC ION × 2 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name K0AVA1_ECO1C
Isoform —
PDB entities 2
Chains and sequence ranges Author chain C; PDBConstruct 1–1342; UniProt 1–1342 Author chain H; PDBConstruct 1–1342; UniProt 1–1342

;DNA-directed RNA polymerase subunit beta' ;

Escherichia coli

UniProt K0BCS5

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 6 DNA 1 RNA 1 DNA-directed RNA polymerase subunit alpha × 2 (B1X6E7) DNA-directed RNA polymerase subunit beta × 1 (K0AVA1) DNA-directed RNA polymerase subunit omega × 1 (K0BU55) RNA polymerase-associated protein RapA × 1 (P60240) 5'-D(P*AP*CP*GP*AP*CP*TP*GP*AP*GP*CP*CP*GP*AP*TP*G)-3' × 1 5'-R(P*AP*UP*CP*GP*GP*CP*UP*CP*A)-3' × 1 ZINC ION × 2 MAGNESIUM ION × 1 Consistent with all polymers
2 Other combination Heteromer Protein 6 DNA 1 RNA 1 DNA-directed RNA polymerase subunit alpha × 2 (B1X6E7) DNA-directed RNA polymerase subunit beta × 1 (K0AVA1) DNA-directed RNA polymerase subunit omega × 1 (K0BU55) RNA polymerase-associated protein RapA × 1 (P60240) 5'-D(P*AP*CP*GP*AP*CP*TP*GP*AP*GP*CP*CP*GP*AP*TP*G)-3' × 1 5'-R(P*AP*UP*CP*GP*GP*CP*UP*CP*A)-3' × 1 ZINC ION × 2 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name K0BCS5_ECO1E
Isoform —
PDB entities 3
Chains and sequence ranges Author chain D; PDBConstruct 1–1407; UniProt 1–1407 Author chain I; PDBConstruct 1–1407; UniProt 1–1407

DNA-directed RNA polymerase subunit omega

Escherichia coli

UniProt K0BU55

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 6 DNA 1 RNA 1 DNA-directed RNA polymerase subunit alpha × 2 (B1X6E7) DNA-directed RNA polymerase subunit beta × 1 (K0AVA1) ;DNA-directed RNA polymerase subunit beta' ; × 1 (K0BCS5) RNA polymerase-associated protein RapA × 1 (P60240) 5'-D(P*AP*CP*GP*AP*CP*TP*GP*AP*GP*CP*CP*GP*AP*TP*G)-3' × 1 5'-R(P*AP*UP*CP*GP*GP*CP*UP*CP*A)-3' × 1 ZINC ION × 2 MAGNESIUM ION × 1 Consistent with all polymers
2 Other combination Heteromer Protein 6 DNA 1 RNA 1 DNA-directed RNA polymerase subunit alpha × 2 (B1X6E7) DNA-directed RNA polymerase subunit beta × 1 (K0AVA1) ;DNA-directed RNA polymerase subunit beta' ; × 1 (K0BCS5) RNA polymerase-associated protein RapA × 1 (P60240) 5'-D(P*AP*CP*GP*AP*CP*TP*GP*AP*GP*CP*CP*GP*AP*TP*G)-3' × 1 5'-R(P*AP*UP*CP*GP*GP*CP*UP*CP*A)-3' × 1 ZINC ION × 2 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name K0BU55_ECO1E
Isoform —
PDB entities 4
Chains and sequence ranges Author chain E; PDBConstruct 1–90; UniProt 2–91 Author chain J; PDBConstruct 1–90; UniProt 2–91

RNA polymerase-associated protein RapA

Escherichia coli

UniProt P60240

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 6 DNA 1 RNA 1 DNA-directed RNA polymerase subunit alpha × 2 (B1X6E7) DNA-directed RNA polymerase subunit beta × 1 (K0AVA1) ;DNA-directed RNA polymerase subunit beta' ; × 1 (K0BCS5) DNA-directed RNA polymerase subunit omega × 1 (K0BU55) 5'-D(P*AP*CP*GP*AP*CP*TP*GP*AP*GP*CP*CP*GP*AP*TP*G)-3' × 1 5'-R(P*AP*UP*CP*GP*GP*CP*UP*CP*A)-3' × 1 ZINC ION × 2 MAGNESIUM ION × 1 Consistent with all polymers
2 Other combination Heteromer Protein 6 DNA 1 RNA 1 DNA-directed RNA polymerase subunit alpha × 2 (B1X6E7) DNA-directed RNA polymerase subunit beta × 1 (K0AVA1) ;DNA-directed RNA polymerase subunit beta' ; × 1 (K0BCS5) DNA-directed RNA polymerase subunit omega × 1 (K0BU55) 5'-D(P*AP*CP*GP*AP*CP*TP*GP*AP*GP*CP*CP*GP*AP*TP*G)-3' × 1 5'-R(P*AP*UP*CP*GP*GP*CP*UP*CP*A)-3' × 1 ZINC ION × 2 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RAPA_ECOLI
Isoform —
PDB entities 5
Chains and sequence ranges Author chain K; PDBConstruct 7–974; UniProt 1–968 Author chain L; PDBConstruct 7–974; UniProt 1–968

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id4s20
Deposition date deposition_date2015-01-16
Structure title titleStructural basis for transcription reactivation by RapA
Keywords keywordsDNA-directed RNA polymerase, transcription transferase, DNA translocase, ATPase, TRANSFERASE-DNA-RNA complex; TRANSFERASE/DNA/RNA
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

4s20__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

4s20__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

4s20__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)52.48 Å
Rg (electron density)52.14 Å
Total Rg52.24 Å
Atom count30563
Residues3842
Excluded volume541120 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 4s20__assembly_1__model_1 octameric (8) Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 4s20__assembly_2__model_1 octameric (8) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (9)

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7. Citations (1)