SAXSdb — 4wba

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1. Protein Identity and Related Structures Protein Identity & Related Structures

Non-structural glycoprotein NSP4

Simian rotavirus A/SA11

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein homooligomer	Homooligomer	Protein 5	GLYCEROL × 2 PHOSPHATE ION × 1 water × 5	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	O92323_9REOV
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain A； PDBConstruct 1–52； UniProt 95–146 Author chain B； PDBConstruct 1–52； UniProt 95–146 Author chain C； PDBConstruct 1–52； UniProt 95–146 Author chain D； PDBConstruct 1–52； UniProt 95–146 Author chain E； PDBConstruct 1–52； UniProt 95–146

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	4wba
Deposition date deposition_date	2014-09-02
Structure title title	Q/E mutant SA11 NSP4_CCD
Keywords keywords	Nonstructural protein, Enterotoxin, CCD, Ca2+-binding mutant, VIRAL PROTEIN; VIRAL PROTEIN
Experimental Method method	X-RAY DIFFRACTION

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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

4wba__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

4wba__assembly_1__model_1 | I(q)

100 plotted points; both axes use logarithmic scales.

4wba__assembly_1__model_1 | P(r) · Pending

P(r) will be calculated and displayed separately for the same assembly/model.

Rg（Guinier）	20.47 Å
Rg (electron density)	19.97 Å
Total Rg	20.58 Å
Atom count	1655
Residues	207
Excluded volume	29943 Å³
Maximum q	0.500 Å⁻¹

Assembly	Model	Structure unit	Oligomeric description	Status	CRYSOL	Actions
1	1	`4wba__assembly_1__model_1`	pentameric （5）	Success	4.1.3-1-20251215 (887e7ef)	View Download

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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (4)

Entity 1 Entity 1 polymer

Description description	Non-structural glycoprotein NSP4
Molecular weight formula_weight	6220.4 kDa
Mutation mutation	E120A, Q123A
Source method src_method	man
Copy count entity_count	5

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	A,B,C,D,E
Atom count atom_count	1985

IEKQMDRVVKEMRRQLEMIDKLTTRAIEAVELLKRIYDKLTVQTTGEIDMTK

Source Source

Source organism organism	Simian rotavirus A/SA11
NCBI taxonomy ID ncbi_taxonomy_id	10923
Host organism host_organism	Escherichia coli

Entity 2 Entity 2 non-polymer

Description description	GLYCEROL
Molecular weight formula_weight	92.1 kDa
Source method src_method	syn
Copy count entity_count	2

Entity 3 Entity 3 non-polymer

Description description	PHOSPHATE ION
Molecular weight formula_weight	95.0 kDa
Source method src_method	syn
Copy count entity_count	1

Entity 4 Entity 4 water

Description description	water
Molecular weight formula_weight	18.0 kDa
Source method src_method	nat
Copy count entity_count	330

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6. Fold Classification (SCOP + CATH) 10 domains

SCOP 2.08 (5 domains)

Domain ID domain_id	d4wbaa_
Class class	h — Coiled coil proteins
Fold Fold fold	h.1 — Parallel coiled-coil
Superfamily Superfamily superfamily	h.1.13 — Rotavirus nonstructural proteins
Family Family family	h.1.13.1 — NSP4 oligomerization domain

Domain ID domain_id	d4wbab_
Class class	h — Coiled coil proteins
Fold Fold fold	h.1 — Parallel coiled-coil
Superfamily Superfamily superfamily	h.1.13 — Rotavirus nonstructural proteins
Family Family family	h.1.13.1 — NSP4 oligomerization domain

Domain ID domain_id	d4wbac_
Class class	h — Coiled coil proteins
Fold Fold fold	h.1 — Parallel coiled-coil
Superfamily Superfamily superfamily	h.1.13 — Rotavirus nonstructural proteins
Family Family family	h.1.13.1 — NSP4 oligomerization domain

Domain ID domain_id	d4wbad_
Class class	h — Coiled coil proteins
Fold Fold fold	h.1 — Parallel coiled-coil
Superfamily Superfamily superfamily	h.1.13 — Rotavirus nonstructural proteins
Family Family family	h.1.13.1 — NSP4 oligomerization domain

Domain ID domain_id	d4wbae_
Class class	h — Coiled coil proteins
Fold Fold fold	h.1 — Parallel coiled-coil
Superfamily Superfamily superfamily	h.1.13 — Rotavirus nonstructural proteins
Family Family family	h.1.13.1 — NSP4 oligomerization domain

CATH v4.4 (5 domains)

Domain ID domain_id	4wbaA00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	430 —

Domain ID domain_id	4wbaB00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	430 —

Domain ID domain_id	4wbaC00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	430 —

Domain ID domain_id	4wbaD00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	430 —

Domain ID domain_id	4wbaE00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	430 —

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Unit-cell length a length_a	39.857 Å
Unit-cell length b length_b	53.469 Å
Unit-cell length c length_c	52.543 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	95.84 °
Unit-cell angle γ angle_gamma	90.00 °
Molecules per unit cell Z z_pdb	10

Space group space_group	P 1 21 1
Space-group number int_tables_number	4
Crystal system crystal_system	—

Resolution resolution	1.799 Å
Low-resolution limit resolution_low	28.240 Å
R factor r_factor	0.1899
R_work r_work	0.1874
R_free r_free	0.2369

Q/E mutant SA11 NSP4_CCD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Non-structural glycoprotein NSP4

State in the Current Structure

Other States of the Same Protein in the Database

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

4wba__assembly_1__model_1

4wba__assembly_1__model_1 | I(q)

4wba__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

Refinement Refinement

Diffraction experiment Diffraction

5. Entities and Polymers Entities & Polymers (4)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

Entity 2 Entity 2 non-polymer

Entity 3 Entity 3 non-polymer

Entity 4 Entity 4 water

6. Fold Classification (SCOP + CATH) 10 domains

SCOP 2.08 (5 domains)

CATH v4.4 (5 domains)

7. Citations (1)

Q/E mutant SA11 NSP4_CCD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Non-structural glycoprotein NSP4

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

4wba__assembly_1__model_1

4wba__assembly_1__model_1 | I(q)

4wba__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

Refinement Refinement

Diffraction experiment Diffraction

5. Entities and Polymers Entities & Polymers (4)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

Entity 2 Entity 2 non-polymer

Entity 3 Entity 3 non-polymer

Entity 4 Entity 4 water

6. Fold Classification (SCOP + CATH) 10 domains

SCOP 2.08 (5 domains)

CATH v4.4 (5 domains)

7. Citations (1)