4zjo

Crystal structure of AcrB triple mutant in complex with antibiotic in P21 space group

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

Multidrug efflux pump subunit AcrB

Escherichia coli str. K-12 substr. MG1655

UniProt P31224

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白同源多聚体 同源多聚体 蛋白 3 ERYTHROMYCIN A × 1 DODECYL-BETA-D-MALTOSIDE × 4 NICKEL (II) ION × 2 与蛋白数一致
2 蛋白同源多聚体 同源多聚体 蛋白 3 ERYTHROMYCIN A × 1 DODECYL-BETA-D-MALTOSIDE × 4 NICKEL (II) ION × 1 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 ACRB_ECOLI
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–1049; UniProt 1–1049 作者链 B; PDB构建体 1–1049; UniProt 1–1049 作者链 C; PDB构建体 1–1049; UniProt 1–1049 作者链 D; PDB构建体 1–1049; UniProt 1–1049 作者链 E; PDB构建体 1–1049; UniProt 1–1049 作者链 F; PDB构建体 1–1049; UniProt 1–1049

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id4zjo
沉积日期 deposition_date2015-04-29
结构标题 titleCrystal structure of AcrB triple mutant in complex with antibiotic in P21 space group
关键词 keywordsTRANSPORT PROTEIN; TRANSPORT PROTEIN
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

4zjo__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

4zjo__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

4zjo__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)46.43 Å
Rg(电子密度)45.71 Å
总 Rg46.02 Å
原子数23931
残基数3128
排除体积432480 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 4zjo__assembly_1__model_1 trimeric (3) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
2 1 4zjo__assembly_2__model_1 trimeric (3) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (4)

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6. 折叠分类 (SCOP + CATH) 48 domains

CATH v4.4 (48 domains)

结构域编号 domain_id4zjoA01
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology1640 — Multidrug efflux transporter AcrB transmembrane fold
同源超家族 H-superfamily homologous superfamily10 — Multidrug efflux transporter AcrB transmembrane domain
结构域编号 domain_id4zjoA02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily1430 — Multidrug efflux transporter AcrB pore domain
结构域编号 domain_id4zjoA03
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily1320 — Multidrug efflux transporter AcrB pore domain like
结构域编号 domain_id4zjoA04
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology2090 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
同源超家族 H-superfamily homologous superfamily10 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
结构域编号 domain_id4zjoA05
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology1640 — Multidrug efflux transporter AcrB transmembrane fold
同源超家族 H-superfamily homologous superfamily10 — Multidrug efflux transporter AcrB transmembrane domain
结构域编号 domain_id4zjoA06
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily1430 — Multidrug efflux transporter AcrB pore domain
结构域编号 domain_id4zjoA07
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily1440 — Multidrug efflux transporter AcrB pore domain
结构域编号 domain_id4zjoA08
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology2090 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
同源超家族 H-superfamily homologous superfamily10 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
结构域编号 domain_id4zjoB01
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology1640 — Multidrug efflux transporter AcrB transmembrane fold
同源超家族 H-superfamily homologous superfamily10 — Multidrug efflux transporter AcrB transmembrane domain
结构域编号 domain_id4zjoB02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily1430 — Multidrug efflux transporter AcrB pore domain
结构域编号 domain_id4zjoB03
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily1320 — Multidrug efflux transporter AcrB pore domain like
结构域编号 domain_id4zjoB04
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology2090 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
同源超家族 H-superfamily homologous superfamily10 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
结构域编号 domain_id4zjoB05
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology1640 — Multidrug efflux transporter AcrB transmembrane fold
同源超家族 H-superfamily homologous superfamily10 — Multidrug efflux transporter AcrB transmembrane domain
结构域编号 domain_id4zjoB06
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily1430 — Multidrug efflux transporter AcrB pore domain
结构域编号 domain_id4zjoB07
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily1440 — Multidrug efflux transporter AcrB pore domain
结构域编号 domain_id4zjoB08
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology2090 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
同源超家族 H-superfamily homologous superfamily10 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
结构域编号 domain_id4zjoC01
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology1640 — Multidrug efflux transporter AcrB transmembrane fold
同源超家族 H-superfamily homologous superfamily10 — Multidrug efflux transporter AcrB transmembrane domain
结构域编号 domain_id4zjoC02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily1430 — Multidrug efflux transporter AcrB pore domain
结构域编号 domain_id4zjoC03
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily1320 — Multidrug efflux transporter AcrB pore domain like
结构域编号 domain_id4zjoC04
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology2090 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
同源超家族 H-superfamily homologous superfamily10 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
结构域编号 domain_id4zjoC05
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology1640 — Multidrug efflux transporter AcrB transmembrane fold
同源超家族 H-superfamily homologous superfamily10 — Multidrug efflux transporter AcrB transmembrane domain
结构域编号 domain_id4zjoC06
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily1430 — Multidrug efflux transporter AcrB pore domain
结构域编号 domain_id4zjoC07
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily1440 — Multidrug efflux transporter AcrB pore domain
结构域编号 domain_id4zjoC08
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology2090 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
同源超家族 H-superfamily homologous superfamily10 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
结构域编号 domain_id4zjoD01
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology1640 — Multidrug efflux transporter AcrB transmembrane fold
同源超家族 H-superfamily homologous superfamily10 — Multidrug efflux transporter AcrB transmembrane domain
结构域编号 domain_id4zjoD02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily1430 — Multidrug efflux transporter AcrB pore domain
结构域编号 domain_id4zjoD03
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily1320 — Multidrug efflux transporter AcrB pore domain like
结构域编号 domain_id4zjoD04
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology2090 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
同源超家族 H-superfamily homologous superfamily10 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
结构域编号 domain_id4zjoD05
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology1640 — Multidrug efflux transporter AcrB transmembrane fold
同源超家族 H-superfamily homologous superfamily10 — Multidrug efflux transporter AcrB transmembrane domain
结构域编号 domain_id4zjoD06
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily1430 — Multidrug efflux transporter AcrB pore domain
结构域编号 domain_id4zjoD07
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily1440 — Multidrug efflux transporter AcrB pore domain
结构域编号 domain_id4zjoD08
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology2090 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
同源超家族 H-superfamily homologous superfamily10 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
结构域编号 domain_id4zjoE01
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology1640 — Multidrug efflux transporter AcrB transmembrane fold
同源超家族 H-superfamily homologous superfamily10 — Multidrug efflux transporter AcrB transmembrane domain
结构域编号 domain_id4zjoE02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily1430 — Multidrug efflux transporter AcrB pore domain
结构域编号 domain_id4zjoE03
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily1320 — Multidrug efflux transporter AcrB pore domain like
结构域编号 domain_id4zjoE04
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology2090 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
同源超家族 H-superfamily homologous superfamily10 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
结构域编号 domain_id4zjoE05
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology1640 — Multidrug efflux transporter AcrB transmembrane fold
同源超家族 H-superfamily homologous superfamily10 — Multidrug efflux transporter AcrB transmembrane domain
结构域编号 domain_id4zjoE06
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily1430 — Multidrug efflux transporter AcrB pore domain
结构域编号 domain_id4zjoE07
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily1440 — Multidrug efflux transporter AcrB pore domain
结构域编号 domain_id4zjoE08
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology2090 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
同源超家族 H-superfamily homologous superfamily10 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
结构域编号 domain_id4zjoF01
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology1640 — Multidrug efflux transporter AcrB transmembrane fold
同源超家族 H-superfamily homologous superfamily10 — Multidrug efflux transporter AcrB transmembrane domain
结构域编号 domain_id4zjoF02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily1430 — Multidrug efflux transporter AcrB pore domain
结构域编号 domain_id4zjoF03
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily1320 — Multidrug efflux transporter AcrB pore domain like
结构域编号 domain_id4zjoF04
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology2090 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
同源超家族 H-superfamily homologous superfamily10 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
结构域编号 domain_id4zjoF05
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology1640 — Multidrug efflux transporter AcrB transmembrane fold
同源超家族 H-superfamily homologous superfamily10 — Multidrug efflux transporter AcrB transmembrane domain
结构域编号 domain_id4zjoF06
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily1430 — Multidrug efflux transporter AcrB pore domain
结构域编号 domain_id4zjoF07
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily1440 — Multidrug efflux transporter AcrB pore domain
结构域编号 domain_id4zjoF08
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology2090 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
同源超家族 H-superfamily homologous superfamily10 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
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7. 引用文献 (1)