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5a9e

Cryo-electron tomography and subtomogram averaging of Rous-Sarcoma- Virus deltaMBD virus-like particles

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

DELTAMBD GAG PROTEIN

ROUS SARCOMA VIRUS

UniProt P03322

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 6 No other associated polymer Consistent with protein count
2 Protein homooligomer Homooligomer Protein 6 No other associated polymer Consistent with protein count
3 Protein homooligomer Homooligomer Protein 6 No other associated polymer Consistent with protein count
4 Protein homooligomer Homooligomer Protein 6 No other associated polymer Consistent with protein count
5 Protein homooligomer Homooligomer Protein 6 No other associated polymer Consistent with protein count
6 Protein homooligomer Homooligomer Protein 6 No other associated polymer Consistent with protein count
7 Protein homooligomer Homooligomer Protein 6 No other associated polymer Consistent with protein count

Other States of the Same Protein in the Database

Monomer
1a6s 1em9 1em9 1eoq 2x8q 2x8q 3g0v 3g29 3g29

9 assemblies

Homodimer
1p7n 2rsp 3g1g 3g1g 3g1i 3g21 3g26 3g28

8 assemblies

Homotetramer

None

Other homooligomers
2x8q 2x8q 2x8q 5a9e 5a9e 5a9e 5a9e 5a9e 5a9e 5a9e 7no0 7no1

37 assemblies; showing the first 12

Heteromeric or nucleic-acid complex
2ihx

1 assemblies

View Construct and Data Evidence
UniProt name GAG_RSVP
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 2–495； UniProt 84–577 Author chain B； PDBConstruct 2–495； UniProt 84–577 Author chain C； PDBConstruct 2–495； UniProt 84–577 Author chain D； PDBConstruct 2–495； UniProt 84–577 Author chain E； PDBConstruct 2–495； UniProt 84–577 Author chain F； PDBConstruct 2–495； UniProt 84–577 Author chain G； PDBConstruct 2–495； UniProt 84–577 Author chain H； PDBConstruct 2–495； UniProt 84–577 Author chain I； PDBConstruct 2–495； UniProt 84–577 Author chain J； PDBConstruct 2–495； UniProt 84–577 Author chain K； PDBConstruct 2–495； UniProt 84–577 Author chain L； PDBConstruct 2–495； UniProt 84–577 Author chain M； PDBConstruct 2–495； UniProt 84–577 Author chain N； PDBConstruct 2–495； UniProt 84–577 Author chain O； PDBConstruct 2–495； UniProt 84–577 Author chain P； PDBConstruct 2–495； UniProt 84–577 Author chain Q； PDBConstruct 2–495； UniProt 84–577 Author chain R； PDBConstruct 2–495； UniProt 84–577

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id5a9e
Deposition date deposition_date2015-07-21
Structure title titleCryo-electron tomography and subtomogram averaging of Rous-Sarcoma- Virus deltaMBD virus-like particles
Keywords keywordsRETROVIRUS, ROUS-SARCOMA VIRUS, IMMATURE RETROVIRUS, VIRUS-LIKE-PARTICLE, CAPSID, VIRAL PROTEIN; VIRAL PROTEIN
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

5a9e__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

5a9e__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

5a9e__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）41.84 Å
Rg (electron density)41.24 Å
Total Rg41.56 Å
Atom count6114
Residues1530
Excluded volume83907 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 5a9e__assembly_1__model_1 hexameric （6） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 5a9e__assembly_2__model_1 hexameric （6） Success 4.1.3-1-20251215 (887e7ef) View Download
3 1 5a9e__assembly_3__model_1 hexameric （6） Success 4.1.3-1-20251215 (887e7ef) View Download
4 1 5a9e__assembly_4__model_1 hexameric （6） Success 4.1.3-1-20251215 (887e7ef) View Download
5 1 5a9e__assembly_5__model_1 hexameric （6） Success 4.1.3-1-20251215 (887e7ef) View Download
6 1 5a9e__assembly_6__model_1 hexameric （6） Success 4.1.3-1-20251215 (887e7ef) View Download
7 1 5a9e__assembly_7__model_1 hexameric （6） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (1)

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7. Citations (1)