5e6p

PlexinB2 cytoplasmic region/PDZ-RhoGEF PDZ domain complex

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Plexin-B2

Mus musculus

UniProt B2RXS4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 2 Rho guanine nucleotide exchange factor 11 × 1 (O15085) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PLXB2_MOUSE
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 5–621; UniProt 1226–1842

Rho guanine nucleotide exchange factor 11

Homo sapiens

UniProt O15085

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 2 Plexin-B2 × 1 (B2RXS4) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ARHGB_HUMAN
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 5–88; UniProt 42–125

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id5e6p
Deposition date deposition_date2015-10-10
Structure title titlePlexinB2 cytoplasmic region/PDZ-RhoGEF PDZ domain complex
Keywords keywordsPlexin, PDZ, PDZ-RhoGEF, Complex, SIGNALING PROTEIN; SIGNALING PROTEIN
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

5e6p__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

5e6p__assembly_1__model_1 | I(q)

10-2 10-1 106 107 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

5e6p__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)30.31 Å
Rg (electron density)29.61 Å
Total Rg30.29 Å
Atom count4478
Residues579
Excluded volume80424 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 5e6p__assembly_1__model_1 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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6. Fold Classification (SCOP + CATH) 3 domains

CATH v4.4 (3 domains)

Domain ID domain_id5e6pA01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology506 — GTPase Activation - p120GAP; domain 1
Homologous superfamily homologous superfamily10 — GTPase Activation - p120gap; domain 1
Domain ID domain_id5e6pA02
Class class3 — Alpha Beta
Architecture architecture10 — Roll
Topology topology20 — Ubiquitin-like (UB roll)
Homologous superfamily homologous superfamily90 — Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
Domain ID domain_id5e6pB00
Class class2 — Mainly Beta
Architecture architecture30 — Roll
Topology topology42 — Pdz3 Domain
Homologous superfamily homologous superfamily10 — PDZ domain
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7. Citations (1)