5ixi

Structure of human JAK1 FERM/SH2 in complex with IFNLR1/IL10RA chimera

Method: X-RAY DIFFRACTION Dmax: 91.4 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Tyrosine-protein kinase JAK1

Homo sapiens

UniProt P23458

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Insufficient information Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 35–559 Fragment:UNP residues 35-559 Chimera protein of Interferon lambda receptor 1 and Interleukin-10 receptor subunit alpha × 1 (Q8IU57,Q13651) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;277 K;0.1M MES pH6.5, 0.2M MgCl2, 9% PEG4K, 25% ethylene glycol Resolution 2.57 Å R-free 0.255

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

49 other PDB entries and 85 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name JAK1_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 17–541; UniProt 35–559

Chimera protein of Interferon lambda receptor 1 and Interleukin-10 receptor subunit alpha

Homo sapiens

UniProt Q13651

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Insufficient information Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain B; UniProt 263–303 Fragment:UNP residues 250-259,UNP residues 263-303 Tyrosine-protein kinase JAK1 × 1 (P23458) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;277 K;0.1M MES pH6.5, 0.2M MgCl2, 9% PEG4K, 25% ethylene glycol Resolution 2.57 Å R-free 0.255

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

6 other PDB entries and 6 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name I10R1_HUMAN
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 13–53; UniProt 263–303

Chimera protein of Interferon lambda receptor 1 and Interleukin-10 receptor subunit alpha

Homo sapiens

UniProt Q8IU57

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Insufficient information Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain B; UniProt 250–259 Fragment:UNP residues 250-259,UNP residues 263-303 Tyrosine-protein kinase JAK1 × 1 (P23458) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;277 K;0.1M MES pH6.5, 0.2M MgCl2, 9% PEG4K, 25% ethylene glycol Resolution 2.57 Å R-free 0.255

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

5 other PDB entries and 5 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name INLR1_HUMAN
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 3–12; UniProt 250–259

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 5ixi

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 5ixi
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2. Structure Basics 2. Structure Basics

Entry ID entry_id5ixi
Deposition date deposition_date2016-03-23
Structure title titleStructure of human JAK1 FERM/SH2 in complex with IFNLR1/IL10RA chimera
Keywords keywordsJAK kinase, JAK1, IFNLR1, IL10, IL10RA, interferon, cytokine; CYTOKINE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier26.29
Radius of gyration Rg (electron density) rg_electron25.48
Forward intensity I(0) i046493800.00
Molecular weight molecular_weight53420.0 kDa
Excluded volume excluded_volume67102 ų
Envelope volume envelope_volume84374 ų
Hydration-shell volume shell_volume28215 ų
Envelope diameter envelope_diameter97.3
Shell Rg shell_rg31.98
Envelope Rg envelope_rg26.18
Shape Rg shape_rg25.44
Total Rg total_rg26.36
Total atoms total_atoms3759
Residues n_residues465
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax91.4
Rg (real space) rg_real26.30
Rg uncertainty (real space) rg_real_error0.89
I(0) (real space) i0_real4.6490e+07
I(0) uncertainty (real space) i0_real_error7.4690e+05
Rg (reciprocal space) rg_reciprocal26.30
I(0) (reciprocal space) i0_reciprocal46490000.0000
Solution quality estimate total_estimate0.8677
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary30.5
Skewness Skewness skewness0.379
Kurtosis Kurtosis kurtosis-0.228
Angular range angular_range— – 0.3000 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha13460000.0000
Real-space data points n_real_points61
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.783; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.939; Smooth: 0.990

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

8. Citations (1)

9. Files and Curves (10)