5jpm

Structure of the complex of human complement C4 with MASP-2 rebuilt using iMDFF

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

Complement C4-A

物种未注明

UniProt P0C0L4

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 5 其他聚合物 3 Mannan-binding lectin serine protease 2 × 1 (O00187) Mannan-binding lectin serine protease 2 × 1 (O00187) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 3 与蛋白数一致
2 其他组合 异源复合物 蛋白 5 其他聚合物 3 Mannan-binding lectin serine protease 2 × 1 (O00187) Mannan-binding lectin serine protease 2 × 1 (O00187) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 3 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 CO4A_HUMAN
Isoform —
PDB实体 1, 2, 3
链与序列区间 作者链 A; PDB构建体 1–656; UniProt 20–675 作者链 D; PDB构建体 1–656; UniProt 20–675 作者链 B; PDB构建体 1–767; UniProt 680–1446 作者链 E; PDB构建体 1–767; UniProt 680–1446 作者链 C; PDB构建体 1–291; UniProt 1454–1744 作者链 F; PDB构建体 1–291; UniProt 1454–1744

Mannan-binding lectin serine protease 2

Homo sapiens

UniProt O00187

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 5 其他聚合物 3 Complement C4-A × 1 (P0C0L4) Complement C4-A × 1 (P0C0L4) Complement C4-A × 1 (P0C0L4) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 3 与蛋白数一致
2 其他组合 异源复合物 蛋白 5 其他聚合物 3 Complement C4-A × 1 (P0C0L4) Complement C4-A × 1 (P0C0L4) Complement C4-A × 1 (P0C0L4) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 3 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 MASP2_HUMAN
Isoform —
PDB实体 4, 5
链与序列区间 作者链 G; PDB构建体 1–154; UniProt 291–444 作者链 I; PDB构建体 1–154; UniProt 291–444 作者链 H; PDB构建体 1–242; UniProt 445–686 作者链 J; PDB构建体 1–242; UniProt 445–686

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id5jpm
沉积日期 deposition_date2016-05-03
结构标题 titleStructure of the complex of human complement C4 with MASP-2 rebuilt using iMDFF
关键词 keywordscomplement, immune system, blood; IMMUNE SYSTEM
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

5jpm__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

5jpm__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

5jpm__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)47.55 Å
Rg(电子密度)47.69 Å
总 Rg47.81 Å
原子数16107
残基数2063
排除体积286010 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 5jpm__assembly_1__model_1 pentameric (5) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
2 1 5jpm__assembly_2__model_1 pentameric (5) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (6)

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6. 折叠分类 (SCOP + CATH) 34 domains

CATH v4.4 (34 domains)

结构域编号 domain_id5jpmA01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1930 — Macroglobulin (MG2) domain
结构域编号 domain_id5jpmA02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1930 — Macroglobulin (MG2) domain
结构域编号 domain_id5jpmA03
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1940 —
结构域编号 domain_id5jpmA04
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily10 — Immunoglobulins
结构域编号 domain_id5jpmA05
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1930 — Macroglobulin (MG2) domain
结构域编号 domain_id5jpmA06
类 Class class6 — Special
架构 Architecture architecture20 — Other non-globular
拓扑 Topology topology50 — N-terminal domain of TfIIb
同源超家族 H-superfamily homologous superfamily160 —
结构域编号 domain_id5jpmB01
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology91 — Influenza Virus Matrix Protein; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily20 — Anaphylotoxins (complement system)
结构域编号 domain_id5jpmB02
类 Class class2 — Mainly Beta
架构 Architecture architecture20 — Single Sheet
拓扑 Topology topology130 — S-adenosyl-L-methionine-dependent methyltransferases
同源超家族 H-superfamily homologous superfamily20 —
结构域编号 domain_id5jpmB03
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily10 — Immunoglobulins
结构域编号 domain_id5jpmB04
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily1540 —
结构域编号 domain_id5jpmB05
类 Class class1 — Mainly Alpha
架构 Architecture architecture50 — Alpha/alpha barrel
拓扑 Topology topology10 — Glycosyltransferase
同源超家族 H-superfamily homologous superfamily20 —
结构域编号 domain_id5jpmC01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily690 — Alpha-macroglobulin, receptor-binding domain
结构域编号 domain_id5jpmC02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology50 — OB fold (Dihydrolipoamide Acetyltransferase, E2P)
同源超家族 H-superfamily homologous superfamily120 —
结构域编号 domain_id5jpmD01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1930 — Macroglobulin (MG2) domain
结构域编号 domain_id5jpmD02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1930 — Macroglobulin (MG2) domain
结构域编号 domain_id5jpmD03
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1940 —
结构域编号 domain_id5jpmD04
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily10 — Immunoglobulins
结构域编号 domain_id5jpmD05
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1930 — Macroglobulin (MG2) domain
结构域编号 domain_id5jpmD06
类 Class class6 — Special
架构 Architecture architecture20 — Other non-globular
拓扑 Topology topology50 — N-terminal domain of TfIIb
同源超家族 H-superfamily homologous superfamily160 —
结构域编号 domain_id5jpmE01
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology91 — Influenza Virus Matrix Protein; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily20 — Anaphylotoxins (complement system)
结构域编号 domain_id5jpmE02
类 Class class2 — Mainly Beta
架构 Architecture architecture20 — Single Sheet
拓扑 Topology topology130 — S-adenosyl-L-methionine-dependent methyltransferases
同源超家族 H-superfamily homologous superfamily20 —
结构域编号 domain_id5jpmE03
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily10 — Immunoglobulins
结构域编号 domain_id5jpmE04
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily1540 —
结构域编号 domain_id5jpmE05
类 Class class1 — Mainly Alpha
架构 Architecture architecture50 — Alpha/alpha barrel
拓扑 Topology topology10 — Glycosyltransferase
同源超家族 H-superfamily homologous superfamily20 —
结构域编号 domain_id5jpmF01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily690 — Alpha-macroglobulin, receptor-binding domain
结构域编号 domain_id5jpmF02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology50 — OB fold (Dihydrolipoamide Acetyltransferase, E2P)
同源超家族 H-superfamily homologous superfamily120 —
结构域编号 domain_id5jpmG01
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology70 — Complement Module; domain 1
同源超家族 H-superfamily homologous superfamily10 — Complement Module, domain 1
结构域编号 domain_id5jpmG02
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology70 — Complement Module; domain 1
同源超家族 H-superfamily homologous superfamily10 — Complement Module, domain 1
结构域编号 domain_id5jpmH01
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology10 — Thrombin, subunit H
同源超家族 H-superfamily homologous superfamily10 — Trypsin-like serine proteases
结构域编号 domain_id5jpmH02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology10 — Thrombin, subunit H
同源超家族 H-superfamily homologous superfamily10 — Trypsin-like serine proteases
结构域编号 domain_id5jpmI01
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology70 — Complement Module; domain 1
同源超家族 H-superfamily homologous superfamily10 — Complement Module, domain 1
结构域编号 domain_id5jpmI02
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology70 — Complement Module; domain 1
同源超家族 H-superfamily homologous superfamily10 — Complement Module, domain 1
结构域编号 domain_id5jpmJ01
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology10 — Thrombin, subunit H
同源超家族 H-superfamily homologous superfamily10 — Trypsin-like serine proteases
结构域编号 domain_id5jpmJ02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology10 — Thrombin, subunit H
同源超家族 H-superfamily homologous superfamily10 — Trypsin-like serine proteases
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7. 引用文献 (2)