5ner

Localised reconstruction of alpha v beta 6 bound to Foot and Mouth Disease Virus O PanAsia - Pose A prime.

Method: ELECTRON MICROSCOPY
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

O PanAsia VP1

Foot-and-mouth disease virus

UniProt A0A1P8NWT0

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 6 其他聚合物 5 O PanAsia VP2 × 1 (A0A1B0SZV3) O PanAsia VP3 × 1 (J3T9N5) O PanAsia VP4 × 1 (A6Y878) Integrin alpha-V × 1 (P06756) Integrin beta-6 × 1 (P18564) alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose × 1 alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 ;alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; × 1 ;alpha-D-mannopyranose-(1-4)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; × 1 alpha-D-mannopyranose × 3 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 CALCIUM ION × 4 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 A0A1P8NWT0_9PICO
Isoform —
PDB实体 1
链与序列区间 作者链 1; PDB构建体 1–210; UniProt 1–210

O PanAsia VP2

Foot-and-mouth disease virus

UniProt A0A1B0SZV3

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 6 其他聚合物 5 O PanAsia VP1 × 1 (A0A1P8NWT0) O PanAsia VP3 × 1 (J3T9N5) O PanAsia VP4 × 1 (A6Y878) Integrin alpha-V × 1 (P06756) Integrin beta-6 × 1 (P18564) alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose × 1 alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 ;alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; × 1 ;alpha-D-mannopyranose-(1-4)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; × 1 alpha-D-mannopyranose × 3 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 CALCIUM ION × 4 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 A0A1B0SZV3_9PICO
Isoform —
PDB实体 2
链与序列区间 作者链 2; PDB构建体 1–214; UniProt 90–303

O PanAsia VP3

Foot-and-mouth disease virus

UniProt J3T9N5

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 6 其他聚合物 5 O PanAsia VP1 × 1 (A0A1P8NWT0) O PanAsia VP2 × 1 (A0A1B0SZV3) O PanAsia VP4 × 1 (A6Y878) Integrin alpha-V × 1 (P06756) Integrin beta-6 × 1 (P18564) alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose × 1 alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 ;alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; × 1 ;alpha-D-mannopyranose-(1-4)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; × 1 alpha-D-mannopyranose × 3 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 CALCIUM ION × 4 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 J3T9N5_9PICO
Isoform —
PDB实体 3
链与序列区间 作者链 3; PDB构建体 1–220; UniProt 305–524

O PanAsia VP4

Foot-and-mouth disease virus

UniProt A6Y878

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 6 其他聚合物 5 O PanAsia VP1 × 1 (A0A1P8NWT0) O PanAsia VP2 × 1 (A0A1B0SZV3) O PanAsia VP3 × 1 (J3T9N5) Integrin alpha-V × 1 (P06756) Integrin beta-6 × 1 (P18564) alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose × 1 alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 ;alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; × 1 ;alpha-D-mannopyranose-(1-4)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; × 1 alpha-D-mannopyranose × 3 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 CALCIUM ION × 4 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 A6Y878_9PICO
Isoform —
PDB实体 4
链与序列区间 作者链 4; PDB构建体 1–70; UniProt 218–287

Integrin alpha-V

Homo sapiens

UniProt P06756

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 6 其他聚合物 5 O PanAsia VP1 × 1 (A0A1P8NWT0) O PanAsia VP2 × 1 (A0A1B0SZV3) O PanAsia VP3 × 1 (J3T9N5) O PanAsia VP4 × 1 (A6Y878) Integrin beta-6 × 1 (P18564) alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose × 1 alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 ;alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; × 1 ;alpha-D-mannopyranose-(1-4)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; × 1 alpha-D-mannopyranose × 3 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 CALCIUM ION × 4 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 ITAV_HUMAN
Isoform —
PDB实体 5
链与序列区间 作者链 A; PDB构建体 1–594; UniProt 31–624

Integrin beta-6

Homo sapiens

UniProt P18564

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 6 其他聚合物 5 O PanAsia VP1 × 1 (A0A1P8NWT0) O PanAsia VP2 × 1 (A0A1B0SZV3) O PanAsia VP3 × 1 (J3T9N5) O PanAsia VP4 × 1 (A6Y878) Integrin alpha-V × 1 (P06756) alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose × 1 alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 ;alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; × 1 ;alpha-D-mannopyranose-(1-4)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; × 1 alpha-D-mannopyranose × 3 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 CALCIUM ION × 4 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 ITB6_HUMAN
Isoform —
PDB实体 6
链与序列区间 作者链 B; PDB构建体 1–470; UniProt 22–491

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id5ner
沉积日期 deposition_date2017-03-11
结构标题 titleLocalised reconstruction of alpha v beta 6 bound to Foot and Mouth Disease Virus O PanAsia - Pose A prime.
关键词 keywordsFoot and Mouth Disease Virus, FMDV, virus, OpanAsia, virus-receptor, complex; VIRUS
实验方法 methodELECTRON MICROSCOPY
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

5ner__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

5ner__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

5ner__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)48.68 Å
Rg(电子密度)48.60 Å
总 Rg48.96 Å
原子数13639
残基数1728
排除体积242120 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 5ner__assembly_1__model_1 hexameric (6) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (14)

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6. 折叠分类 (SCOP + CATH) 4 domains

SCOP 2.08 (4 domains)

结构域编号 domain_idd5ner1_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.1 — Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
结构域编号 domain_idd5ner3_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.1 — Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
结构域编号 domain_idd5nera1
类 Class classb — All beta proteins
折叠类型 Fold foldb.69 — 7-bladed beta-propeller
超家族 Superfamily superfamilyb.69.8 — Integrin alpha N-terminal domain
家族 Family familyb.69.8.1 — Integrin alpha N-terminal domain
结构域编号 domain_idd5nera2
类 Class classb — All beta proteins
折叠类型 Fold foldb.1 — Immunoglobulin-like beta-sandwich
超家族 Superfamily superfamilyb.1.15 — Integrin domains
家族 Family familyb.1.15.0 — automated matches
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7. 引用文献 (1)