5neu

Localised Reconstruction of Integrin alpha V beta 6 bound to Foot and Mouth Disease Virus O1 Manisa - Pose B.

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

O1 Manisa VP1

Foot-and-mouth disease virus

UniProt Q6PMW3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 360 Capsid protein × 60 (A0A1C6ZW60) O1 Manisa VP4 × 60 (E1ACS1) Integrin alpha-V × 60 (P06756) Integrin beta-6 × 60 (P18564) MAGNESIUM ION × 60 CALCIUM ION × 120 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 6 Capsid protein × 1 (A0A1C6ZW60) O1 Manisa VP4 × 1 (E1ACS1) Integrin alpha-V × 1 (P06756) Integrin beta-6 × 1 (P18564) MAGNESIUM ION × 1 CALCIUM ION × 2 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 30 Capsid protein × 5 (A0A1C6ZW60) O1 Manisa VP4 × 5 (E1ACS1) Integrin alpha-V × 5 (P06756) Integrin beta-6 × 5 (P18564) MAGNESIUM ION × 5 CALCIUM ION × 10 Consistent with protein count
4 Protein heterocomplex Heteromer Protein 36 Capsid protein × 6 (A0A1C6ZW60) O1 Manisa VP4 × 6 (E1ACS1) Integrin alpha-V × 6 (P06756) Integrin beta-6 × 6 (P18564) MAGNESIUM ION × 6 CALCIUM ION × 12 Consistent with protein count
5 Protein heterocomplex Heteromer Protein 6 Capsid protein × 1 (A0A1C6ZW60) O1 Manisa VP4 × 1 (E1ACS1) Integrin alpha-V × 1 (P06756) Integrin beta-6 × 1 (P18564) MAGNESIUM ION × 1 CALCIUM ION × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q6PMW3_9PICO
Isoform —
PDB entities 1, 2
Chains and sequence ranges Author chain 1; PDBConstruct 1–208; UniProt 725–932 Author chain 2; PDBConstruct 1–218; UniProt 287–504

Capsid protein

Foot-and-mouth disease virus

UniProt A0A1C6ZW60

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 360 O1 Manisa VP1 × 60 (Q6PMW3) O1 Manisa VP2 × 60 (Q6PMW3) O1 Manisa VP4 × 60 (E1ACS1) Integrin alpha-V × 60 (P06756) Integrin beta-6 × 60 (P18564) MAGNESIUM ION × 60 CALCIUM ION × 120 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 6 O1 Manisa VP1 × 1 (Q6PMW3) O1 Manisa VP2 × 1 (Q6PMW3) O1 Manisa VP4 × 1 (E1ACS1) Integrin alpha-V × 1 (P06756) Integrin beta-6 × 1 (P18564) MAGNESIUM ION × 1 CALCIUM ION × 2 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 30 O1 Manisa VP1 × 5 (Q6PMW3) O1 Manisa VP2 × 5 (Q6PMW3) O1 Manisa VP4 × 5 (E1ACS1) Integrin alpha-V × 5 (P06756) Integrin beta-6 × 5 (P18564) MAGNESIUM ION × 5 CALCIUM ION × 10 Consistent with protein count
4 Protein heterocomplex Heteromer Protein 36 O1 Manisa VP1 × 6 (Q6PMW3) O1 Manisa VP2 × 6 (Q6PMW3) O1 Manisa VP4 × 6 (E1ACS1) Integrin alpha-V × 6 (P06756) Integrin beta-6 × 6 (P18564) MAGNESIUM ION × 6 CALCIUM ION × 12 Consistent with protein count
5 Protein heterocomplex Heteromer Protein 6 O1 Manisa VP1 × 1 (Q6PMW3) O1 Manisa VP2 × 1 (Q6PMW3) O1 Manisa VP4 × 1 (E1ACS1) Integrin alpha-V × 1 (P06756) Integrin beta-6 × 1 (P18564) MAGNESIUM ION × 1 CALCIUM ION × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A1C6ZW60_9PICO
Isoform —
PDB entities 3
Chains and sequence ranges Author chain 3; PDBConstruct 1–220; UniProt 304–523

O1 Manisa VP4

Foot-and-mouth disease virus

UniProt E1ACS1

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 360 O1 Manisa VP1 × 60 (Q6PMW3) O1 Manisa VP2 × 60 (Q6PMW3) Capsid protein × 60 (A0A1C6ZW60) Integrin alpha-V × 60 (P06756) Integrin beta-6 × 60 (P18564) MAGNESIUM ION × 60 CALCIUM ION × 120 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 6 O1 Manisa VP1 × 1 (Q6PMW3) O1 Manisa VP2 × 1 (Q6PMW3) Capsid protein × 1 (A0A1C6ZW60) Integrin alpha-V × 1 (P06756) Integrin beta-6 × 1 (P18564) MAGNESIUM ION × 1 CALCIUM ION × 2 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 30 O1 Manisa VP1 × 5 (Q6PMW3) O1 Manisa VP2 × 5 (Q6PMW3) Capsid protein × 5 (A0A1C6ZW60) Integrin alpha-V × 5 (P06756) Integrin beta-6 × 5 (P18564) MAGNESIUM ION × 5 CALCIUM ION × 10 Consistent with protein count
4 Protein heterocomplex Heteromer Protein 36 O1 Manisa VP1 × 6 (Q6PMW3) O1 Manisa VP2 × 6 (Q6PMW3) Capsid protein × 6 (A0A1C6ZW60) Integrin alpha-V × 6 (P06756) Integrin beta-6 × 6 (P18564) MAGNESIUM ION × 6 CALCIUM ION × 12 Consistent with protein count
5 Protein heterocomplex Heteromer Protein 6 O1 Manisa VP1 × 1 (Q6PMW3) O1 Manisa VP2 × 1 (Q6PMW3) Capsid protein × 1 (A0A1C6ZW60) Integrin alpha-V × 1 (P06756) Integrin beta-6 × 1 (P18564) MAGNESIUM ION × 1 CALCIUM ION × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name E1ACS1_9PICO
Isoform —
PDB entities 4
Chains and sequence ranges Author chain 4; PDBConstruct 1–85; UniProt 202–286

Integrin alpha-V

Homo sapiens

UniProt P06756

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 360 O1 Manisa VP1 × 60 (Q6PMW3) O1 Manisa VP2 × 60 (Q6PMW3) Capsid protein × 60 (A0A1C6ZW60) O1 Manisa VP4 × 60 (E1ACS1) Integrin beta-6 × 60 (P18564) MAGNESIUM ION × 60 CALCIUM ION × 120 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 6 O1 Manisa VP1 × 1 (Q6PMW3) O1 Manisa VP2 × 1 (Q6PMW3) Capsid protein × 1 (A0A1C6ZW60) O1 Manisa VP4 × 1 (E1ACS1) Integrin beta-6 × 1 (P18564) MAGNESIUM ION × 1 CALCIUM ION × 2 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 30 O1 Manisa VP1 × 5 (Q6PMW3) O1 Manisa VP2 × 5 (Q6PMW3) Capsid protein × 5 (A0A1C6ZW60) O1 Manisa VP4 × 5 (E1ACS1) Integrin beta-6 × 5 (P18564) MAGNESIUM ION × 5 CALCIUM ION × 10 Consistent with protein count
4 Protein heterocomplex Heteromer Protein 36 O1 Manisa VP1 × 6 (Q6PMW3) O1 Manisa VP2 × 6 (Q6PMW3) Capsid protein × 6 (A0A1C6ZW60) O1 Manisa VP4 × 6 (E1ACS1) Integrin beta-6 × 6 (P18564) MAGNESIUM ION × 6 CALCIUM ION × 12 Consistent with protein count
5 Protein heterocomplex Heteromer Protein 6 O1 Manisa VP1 × 1 (Q6PMW3) O1 Manisa VP2 × 1 (Q6PMW3) Capsid protein × 1 (A0A1C6ZW60) O1 Manisa VP4 × 1 (E1ACS1) Integrin beta-6 × 1 (P18564) MAGNESIUM ION × 1 CALCIUM ION × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ITAV_HUMAN
Isoform —
PDB entities 5
Chains and sequence ranges Author chain A; PDBConstruct 1–590; UniProt 31–624

Integrin beta-6

Homo sapiens

UniProt P18564

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 360 O1 Manisa VP1 × 60 (Q6PMW3) O1 Manisa VP2 × 60 (Q6PMW3) Capsid protein × 60 (A0A1C6ZW60) O1 Manisa VP4 × 60 (E1ACS1) Integrin alpha-V × 60 (P06756) MAGNESIUM ION × 60 CALCIUM ION × 120 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 6 O1 Manisa VP1 × 1 (Q6PMW3) O1 Manisa VP2 × 1 (Q6PMW3) Capsid protein × 1 (A0A1C6ZW60) O1 Manisa VP4 × 1 (E1ACS1) Integrin alpha-V × 1 (P06756) MAGNESIUM ION × 1 CALCIUM ION × 2 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 30 O1 Manisa VP1 × 5 (Q6PMW3) O1 Manisa VP2 × 5 (Q6PMW3) Capsid protein × 5 (A0A1C6ZW60) O1 Manisa VP4 × 5 (E1ACS1) Integrin alpha-V × 5 (P06756) MAGNESIUM ION × 5 CALCIUM ION × 10 Consistent with protein count
4 Protein heterocomplex Heteromer Protein 36 O1 Manisa VP1 × 6 (Q6PMW3) O1 Manisa VP2 × 6 (Q6PMW3) Capsid protein × 6 (A0A1C6ZW60) O1 Manisa VP4 × 6 (E1ACS1) Integrin alpha-V × 6 (P06756) MAGNESIUM ION × 6 CALCIUM ION × 12 Consistent with protein count
5 Protein heterocomplex Heteromer Protein 6 O1 Manisa VP1 × 1 (Q6PMW3) O1 Manisa VP2 × 1 (Q6PMW3) Capsid protein × 1 (A0A1C6ZW60) O1 Manisa VP4 × 1 (E1ACS1) Integrin alpha-V × 1 (P06756) MAGNESIUM ION × 1 CALCIUM ION × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ITB6_HUMAN
Isoform —
PDB entities 6
Chains and sequence ranges Author chain B; PDBConstruct 1–470; UniProt 22–491

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id5neu
Deposition date deposition_date2017-03-11
Structure title titleLocalised Reconstruction of Integrin alpha V beta 6 bound to Foot and Mouth Disease Virus O1 Manisa - Pose B.
Keywords keywordsFoot and Mouth Disease Virus, FMDV, virus, OpanAsia, virus-receptor, complex; VIRUS
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

5neu__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

5neu__assembly_1__model_1 | I(q)

10-2 10-1 105 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

5neu__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)0.00 Å
Rg (electron density)602.60 Å
Total Rg603.00 Å
Atom count797220
Residues103080
Excluded volume14145000 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 5neu__assembly_1__model_1 360-meric (360) Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 5neu__assembly_2__model_1 hexameric (6) Excluded — —
Exclusion reason: Auxiliary symmetry representation; not a complete or representative biological assembly.
3 1 5neu__assembly_3__model_1 30-meric (30) Excluded — —
Exclusion reason: Auxiliary symmetry representation; not a complete or representative biological assembly.
4 1 5neu__assembly_4__model_1 36-meric (36) Excluded — —
Exclusion reason: Auxiliary symmetry representation; not a complete or representative biological assembly.
5 1 5neu__assembly_5__model_1 hexameric (6) Excluded — —
Exclusion reason: Auxiliary symmetry representation; not a complete or representative biological assembly.
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (8)

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6. Fold Classification (SCOP + CATH) 4 domains

SCOP 2.08 (4 domains)

Domain ID domain_idd5neu1_
Class classb — All beta proteins
Fold Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
Family Family familyb.121.4.1 — Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
Domain ID domain_idd5neu3_
Class classb — All beta proteins
Fold Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
Family Family familyb.121.4.1 — Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
Domain ID domain_idd5neua1
Class classb — All beta proteins
Fold Fold foldb.69 — 7-bladed beta-propeller
Superfamily Superfamily superfamilyb.69.8 — Integrin alpha N-terminal domain
Family Family familyb.69.8.1 — Integrin alpha N-terminal domain
Domain ID domain_idd5neua2
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.15 — Integrin domains
Family Family familyb.1.15.0 — automated matches
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7. Citations (1)