5sic

MOLECULAR RECOGNITION AT THE ACTIVE SITE OF SUBTILISIN BPN': CRYSTALLOGRAPHIC STUDIES USING GENETICALLY ENGINEERED PROTEINACEOUS INHIBITOR SSI (STREPTOMYCES SUBTILISIN INHIBITOR)

Method: X-RAY DIFFRACTION Dmax: 77.0 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

;SUBTILISIN BPN' ;

Bacillus amyloliquefaciens

UniProt P00782

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain E; UniProt 108–382 Not recorded SUBTILISIN INHIBITOR (SSI) × 2 (P01006) CA CALCIUM ION × 4 X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 2.20 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

62 other PDB entries and 82 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name SUBT_BACAM
Isoform
PDB entities 1
Chains and sequence ranges Author chain E; PDBConstruct 1–275; UniProt 108–382

SUBTILISIN INHIBITOR (SSI)

OrganismNot specified

UniProt P01006

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain I; UniProt 38–144 Not recorded ;SUBTILISIN BPN' ; × 2 (P00782) CA CALCIUM ION × 4 X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 2.20 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

4 other PDB entries and 4 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name SSI_STRAO
Isoform
PDB entities 2
Chains and sequence ranges Author chain I; PDBConstruct 1–107; UniProt 38–144

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 5sic

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 5sic
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2. Structure Basics 2. Structure Basics

Entry ID entry_id5sic
Deposition date deposition_date1991-11-18
Structure title titleMOLECULAR RECOGNITION AT THE ACTIVE SITE OF SUBTILISIN BPN': CRYSTALLOGRAPHIC STUDIES USING GENETICALLY ENGINEERED PROTEINACEOUS INHIBITOR SSI (STREPTOMYCES SUBTILISIN INHIBITOR)
Keywords keywordsCOMPLEX(PROTEINASE-INHIBITOR), COMPLEX(PROTEINASE-INHIBITOR) complex; COMPLEX(PROTEINASE/INHIBITOR)
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier21.82
Radius of gyration Rg (electron density) rg_electron21.28
Forward intensity I(0) i026484300.00
Molecular weight molecular_weight38464.0 kDa
Excluded volume excluded_volume47674 ų
Envelope volume envelope_volume54078 ų
Hydration-shell volume shell_volume21877 ų
Envelope diameter envelope_diameter80.5
Shell Rg shell_rg27.39
Envelope Rg envelope_rg21.65
Shape Rg shape_rg21.28
Total Rg total_rg22.00
Total atoms total_atoms2701
Residues n_residues382
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax77.0
Rg (real space) rg_real21.90
Rg uncertainty (real space) rg_real_error0.69
I(0) (real space) i0_real2.6480e+07
I(0) uncertainty (real space) i0_real_error3.6670e+05
Rg (reciprocal space) rg_reciprocal21.88
I(0) (reciprocal space) i0_reciprocal26480000.0000
Solution quality estimate total_estimate0.6074
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks3
Primary peak position r_peak_primary25.3
Skewness Skewness skewness0.545
Kurtosis Kurtosis kurtosis0.116
Angular range angular_range— – 0.3650 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha8005000.0000
Real-space data points n_real_points68
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.647; Stabil: 0.999; Sysdev: 0.348; Positv: 1.000; Valcen: 0.909; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

7. Fold Classification (SCOP + CATH) 4 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd5sice_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.41 — Subtilisin-like
Superfamily Superfamily superfamilyc.41.1 — Subtilisin-like
Family Family familyc.41.1.1 — Subtilases
Domain ID domain_idd5sici_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.84 — Subtilisin inhibitor
Superfamily Superfamily superfamilyd.84.1 — Subtilisin inhibitor
Family Family familyd.84.1.1 — Subtilisin inhibitor

CATH v4.4 (2 domains)

Domain ID domain_id5sicE00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily200 — Peptidase S8/S53 domain
Domain ID domain_id5sicI00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology350 — Subtilisin Inhibitor
Homologous superfamily homologous superfamily10 — Subtilisin inhibitor-like

8. Citations (5)

9. Files and Curves (10)