5u0p

Cryo-EM structure of the transcriptional Mediator

Method: ELECTRON MICROSCOPY
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

Mediator complex subunit 14

OrganismNot specified

UniProt Q9P7Y4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Mediator complex subunit 6 × 1 (Q9US45) Mediator complex subunit 8 × 1 (O94646) Mediator complex subunit 17 × 1 (P87306) Mediator complex subunit 18 × 1 (O14198) Mediator complex subunit 20 × 1 (Q10317) Mediator complex subunit 11 × 1 (Q9P6Q0) Mediator complex subunit 22 × 1 (O14010) Mediator complex subunit 4 × 1 Mediator complex subunit 7 × 1 (O60104) Mediator complex subunit 21 × 1 (O94376) Mediator complex subunit 31 × 1 (Q9USH1) Mediator complex subunit 9 × 1 (O13964) Mediator complex subunit 27 × 1 (Q10477) Mediator complex subunit 19 × 1 Mediator complex subunit 10 × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name MED14_SCHPO
Isoform —
PDB entities 1
Chains and sequence ranges Author chain N; PDBConstruct 1–879; UniProt 1–879

Mediator complex subunit 6

OrganismNot specified

UniProt Q9US45

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Mediator complex subunit 14 × 1 (Q9P7Y4) Mediator complex subunit 8 × 1 (O94646) Mediator complex subunit 17 × 1 (P87306) Mediator complex subunit 18 × 1 (O14198) Mediator complex subunit 20 × 1 (Q10317) Mediator complex subunit 11 × 1 (Q9P6Q0) Mediator complex subunit 22 × 1 (O14010) Mediator complex subunit 4 × 1 Mediator complex subunit 7 × 1 (O60104) Mediator complex subunit 21 × 1 (O94376) Mediator complex subunit 31 × 1 (Q9USH1) Mediator complex subunit 9 × 1 (O13964) Mediator complex subunit 27 × 1 (Q10477) Mediator complex subunit 19 × 1 Mediator complex subunit 10 × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name MED6_SCHPO
Isoform —
PDB entities 2
Chains and sequence ranges Author chain F; PDBConstruct 1–216; UniProt 1–216

Mediator complex subunit 8

OrganismNot specified

UniProt O94646

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Mediator complex subunit 14 × 1 (Q9P7Y4) Mediator complex subunit 6 × 1 (Q9US45) Mediator complex subunit 17 × 1 (P87306) Mediator complex subunit 18 × 1 (O14198) Mediator complex subunit 20 × 1 (Q10317) Mediator complex subunit 11 × 1 (Q9P6Q0) Mediator complex subunit 22 × 1 (O14010) Mediator complex subunit 4 × 1 Mediator complex subunit 7 × 1 (O60104) Mediator complex subunit 21 × 1 (O94376) Mediator complex subunit 31 × 1 (Q9USH1) Mediator complex subunit 9 × 1 (O13964) Mediator complex subunit 27 × 1 (Q10477) Mediator complex subunit 19 × 1 Mediator complex subunit 10 × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name MED8_SCHPO
Isoform —
PDB entities 3
Chains and sequence ranges Author chain H; PDBConstruct 1–200; UniProt 1–200

Mediator complex subunit 17

OrganismNot specified

UniProt P87306

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Mediator complex subunit 14 × 1 (Q9P7Y4) Mediator complex subunit 6 × 1 (Q9US45) Mediator complex subunit 8 × 1 (O94646) Mediator complex subunit 18 × 1 (O14198) Mediator complex subunit 20 × 1 (Q10317) Mediator complex subunit 11 × 1 (Q9P6Q0) Mediator complex subunit 22 × 1 (O14010) Mediator complex subunit 4 × 1 Mediator complex subunit 7 × 1 (O60104) Mediator complex subunit 21 × 1 (O94376) Mediator complex subunit 31 × 1 (Q9USH1) Mediator complex subunit 9 × 1 (O13964) Mediator complex subunit 27 × 1 (Q10477) Mediator complex subunit 19 × 1 Mediator complex subunit 10 × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name MED17_SCHPO
Isoform —
PDB entities 4
Chains and sequence ranges Author chain Q; PDBConstruct 1–545; UniProt 1–545

Mediator complex subunit 18

OrganismNot specified

UniProt O14198

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Mediator complex subunit 14 × 1 (Q9P7Y4) Mediator complex subunit 6 × 1 (Q9US45) Mediator complex subunit 8 × 1 (O94646) Mediator complex subunit 17 × 1 (P87306) Mediator complex subunit 20 × 1 (Q10317) Mediator complex subunit 11 × 1 (Q9P6Q0) Mediator complex subunit 22 × 1 (O14010) Mediator complex subunit 4 × 1 Mediator complex subunit 7 × 1 (O60104) Mediator complex subunit 21 × 1 (O94376) Mediator complex subunit 31 × 1 (Q9USH1) Mediator complex subunit 9 × 1 (O13964) Mediator complex subunit 27 × 1 (Q10477) Mediator complex subunit 19 × 1 Mediator complex subunit 10 × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name MED18_SCHPO
Isoform —
PDB entities 5
Chains and sequence ranges Author chain R; PDBConstruct 1–207; UniProt 1–207

Mediator complex subunit 20

OrganismNot specified

UniProt Q10317

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Mediator complex subunit 14 × 1 (Q9P7Y4) Mediator complex subunit 6 × 1 (Q9US45) Mediator complex subunit 8 × 1 (O94646) Mediator complex subunit 17 × 1 (P87306) Mediator complex subunit 18 × 1 (O14198) Mediator complex subunit 11 × 1 (Q9P6Q0) Mediator complex subunit 22 × 1 (O14010) Mediator complex subunit 4 × 1 Mediator complex subunit 7 × 1 (O60104) Mediator complex subunit 21 × 1 (O94376) Mediator complex subunit 31 × 1 (Q9USH1) Mediator complex subunit 9 × 1 (O13964) Mediator complex subunit 27 × 1 (Q10477) Mediator complex subunit 19 × 1 Mediator complex subunit 10 × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name MED20_SCHPO
Isoform —
PDB entities 6
Chains and sequence ranges Author chain T; PDBConstruct 1–193; UniProt 1–193

Mediator complex subunit 11

OrganismNot specified

UniProt Q9P6Q0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Mediator complex subunit 14 × 1 (Q9P7Y4) Mediator complex subunit 6 × 1 (Q9US45) Mediator complex subunit 8 × 1 (O94646) Mediator complex subunit 17 × 1 (P87306) Mediator complex subunit 18 × 1 (O14198) Mediator complex subunit 20 × 1 (Q10317) Mediator complex subunit 22 × 1 (O14010) Mediator complex subunit 4 × 1 Mediator complex subunit 7 × 1 (O60104) Mediator complex subunit 21 × 1 (O94376) Mediator complex subunit 31 × 1 (Q9USH1) Mediator complex subunit 9 × 1 (O13964) Mediator complex subunit 27 × 1 (Q10477) Mediator complex subunit 19 × 1 Mediator complex subunit 10 × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name MED11_SCHPO
Isoform —
PDB entities 7
Chains and sequence ranges Author chain K; PDBConstruct 1–111; UniProt 1–111

Mediator complex subunit 22

OrganismNot specified

UniProt O14010

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Mediator complex subunit 14 × 1 (Q9P7Y4) Mediator complex subunit 6 × 1 (Q9US45) Mediator complex subunit 8 × 1 (O94646) Mediator complex subunit 17 × 1 (P87306) Mediator complex subunit 18 × 1 (O14198) Mediator complex subunit 20 × 1 (Q10317) Mediator complex subunit 11 × 1 (Q9P6Q0) Mediator complex subunit 4 × 1 Mediator complex subunit 7 × 1 (O60104) Mediator complex subunit 21 × 1 (O94376) Mediator complex subunit 31 × 1 (Q9USH1) Mediator complex subunit 9 × 1 (O13964) Mediator complex subunit 27 × 1 (Q10477) Mediator complex subunit 19 × 1 Mediator complex subunit 10 × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name MED22_SCHPO
Isoform —
PDB entities 8
Chains and sequence ranges Author chain V; PDBConstruct 1–136; UniProt 1–136

Mediator complex subunit 7

OrganismNot specified

UniProt O60104

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Mediator complex subunit 14 × 1 (Q9P7Y4) Mediator complex subunit 6 × 1 (Q9US45) Mediator complex subunit 8 × 1 (O94646) Mediator complex subunit 17 × 1 (P87306) Mediator complex subunit 18 × 1 (O14198) Mediator complex subunit 20 × 1 (Q10317) Mediator complex subunit 11 × 1 (Q9P6Q0) Mediator complex subunit 22 × 1 (O14010) Mediator complex subunit 4 × 1 Mediator complex subunit 21 × 1 (O94376) Mediator complex subunit 31 × 1 (Q9USH1) Mediator complex subunit 9 × 1 (O13964) Mediator complex subunit 27 × 1 (Q10477) Mediator complex subunit 19 × 1 Mediator complex subunit 10 × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name MED7_SCHPO
Isoform —
PDB entities 10
Chains and sequence ranges Author chain G; PDBConstruct 1–376; UniProt 1–376

Mediator complex subunit 21

OrganismNot specified

UniProt O94376

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Mediator complex subunit 14 × 1 (Q9P7Y4) Mediator complex subunit 6 × 1 (Q9US45) Mediator complex subunit 8 × 1 (O94646) Mediator complex subunit 17 × 1 (P87306) Mediator complex subunit 18 × 1 (O14198) Mediator complex subunit 20 × 1 (Q10317) Mediator complex subunit 11 × 1 (Q9P6Q0) Mediator complex subunit 22 × 1 (O14010) Mediator complex subunit 4 × 1 Mediator complex subunit 7 × 1 (O60104) Mediator complex subunit 31 × 1 (Q9USH1) Mediator complex subunit 9 × 1 (O13964) Mediator complex subunit 27 × 1 (Q10477) Mediator complex subunit 19 × 1 Mediator complex subunit 10 × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name MED21_SCHPO
Isoform —
PDB entities 11
Chains and sequence ranges Author chain U; PDBConstruct 1–138; UniProt 1–138

Mediator complex subunit 31

OrganismNot specified

UniProt Q9USH1

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Mediator complex subunit 14 × 1 (Q9P7Y4) Mediator complex subunit 6 × 1 (Q9US45) Mediator complex subunit 8 × 1 (O94646) Mediator complex subunit 17 × 1 (P87306) Mediator complex subunit 18 × 1 (O14198) Mediator complex subunit 20 × 1 (Q10317) Mediator complex subunit 11 × 1 (Q9P6Q0) Mediator complex subunit 22 × 1 (O14010) Mediator complex subunit 4 × 1 Mediator complex subunit 7 × 1 (O60104) Mediator complex subunit 21 × 1 (O94376) Mediator complex subunit 9 × 1 (O13964) Mediator complex subunit 27 × 1 (Q10477) Mediator complex subunit 19 × 1 Mediator complex subunit 10 × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name MED31_SCHPO
Isoform —
PDB entities 12
Chains and sequence ranges Author chain 3; PDBConstruct 1–139; UniProt 1–139

Mediator complex subunit 9

OrganismNot specified

UniProt O13964

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Mediator complex subunit 14 × 1 (Q9P7Y4) Mediator complex subunit 6 × 1 (Q9US45) Mediator complex subunit 8 × 1 (O94646) Mediator complex subunit 17 × 1 (P87306) Mediator complex subunit 18 × 1 (O14198) Mediator complex subunit 20 × 1 (Q10317) Mediator complex subunit 11 × 1 (Q9P6Q0) Mediator complex subunit 22 × 1 (O14010) Mediator complex subunit 4 × 1 Mediator complex subunit 7 × 1 (O60104) Mediator complex subunit 21 × 1 (O94376) Mediator complex subunit 31 × 1 (Q9USH1) Mediator complex subunit 27 × 1 (Q10477) Mediator complex subunit 19 × 1 Mediator complex subunit 10 × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name YE44_SCHPO
Isoform —
PDB entities 13
Chains and sequence ranges Author chain I; PDBConstruct 1–121; UniProt 1–121

Mediator complex subunit 27

OrganismNot specified

UniProt Q10477

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Mediator complex subunit 14 × 1 (Q9P7Y4) Mediator complex subunit 6 × 1 (Q9US45) Mediator complex subunit 8 × 1 (O94646) Mediator complex subunit 17 × 1 (P87306) Mediator complex subunit 18 × 1 (O14198) Mediator complex subunit 20 × 1 (Q10317) Mediator complex subunit 11 × 1 (Q9P6Q0) Mediator complex subunit 22 × 1 (O14010) Mediator complex subunit 4 × 1 Mediator complex subunit 7 × 1 (O60104) Mediator complex subunit 21 × 1 (O94376) Mediator complex subunit 31 × 1 (Q9USH1) Mediator complex subunit 9 × 1 (O13964) Mediator complex subunit 19 × 1 Mediator complex subunit 10 × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name MED27_SCHPO
Isoform —
PDB entities 14
Chains and sequence ranges Author chain 2; PDBConstruct 1–273; UniProt 1–273

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id5u0p
Deposition date deposition_date2016-11-26
Structure title titleCryo-EM structure of the transcriptional Mediator
Keywords keywordstranscription, transcriptional, Mediator, Head, Middle, Tail, Srb, RNA polymerase II, Med; TRANSCRIPTION
Experimental Method methodELECTRON MICROSCOPY
▼

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

5u0p__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

5u0p__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

5u0p__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)64.76 Å
Rg (electron density)64.46 Å
Total Rg63.82 Å
Atom count20268
Residues2929
Excluded volume353030 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 5u0p__assembly_1__model_1 hexadecameric (16) Success 4.1.3-1-20251215 (887e7ef) View Download
▶

4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (16)

▶

7. Citations (1)