5y9h

Crystal structure of SafDAA-dsc complex

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

SafD,Putative outer membrane protein,Putative outer membrane protein,Putative outer membrane protein

Salmonella typhimurium

UniProt H9L4M7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Insufficient information Monomer Protein 1 water × 1 Consistent with protein count
2 Insufficient information Monomer Protein 1 water × 1 Consistent with protein count
3 Insufficient information Monomer Protein 1 water × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name H9L4M7_SALTM
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 22–147; UniProt 31–156 Author chain B; PDBConstruct 22–147; UniProt 31–156 Author chain C; PDBConstruct 22–147; UniProt 31–156

SafD,Putative outer membrane protein,Putative outer membrane protein,Putative outer membrane protein

Salmonella typhimurium

UniProt Q8ZRK4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Insufficient information Monomer Protein 1 water × 1 Consistent with protein count
2 Insufficient information Monomer Protein 1 water × 1 Consistent with protein count
3 Insufficient information Monomer Protein 1 water × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q8ZRK4_SALTY
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 152–295; UniProt 27–170 Author chain A; PDBConstruct 300–443; UniProt 27–170 Author chain A; PDBConstruct 448–466; UniProt 27–45 Author chain B; PDBConstruct 152–295; UniProt 27–170 Author chain B; PDBConstruct 300–443; UniProt 27–170 Author chain B; PDBConstruct 448–466; UniProt 27–45 Author chain C; PDBConstruct 152–295; UniProt 27–170 Author chain C; PDBConstruct 300–443; UniProt 27–170 Author chain C; PDBConstruct 448–466; UniProt 27–45

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id5y9h
Deposition date deposition_date2017-08-25
Structure title titleCrystal structure of SafDAA-dsc complex
Keywords keywords;host recognition, biofilm formation, Salmonella atypical fimbriae, poly-adhesive activity, self-associating oligomerization, CELL ADHESION ;; CELL ADHESION
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

5y9h__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

5y9h__assembly_1__model_1 | I(q)

10-2 10-1 105 106 107 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

5y9h__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)37.39 Å
Rg (electron density)38.04 Å
Total Rg37.95 Å
Atom count6313
Residues430
Excluded volume56592 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 5y9h__assembly_1__model_1 monomeric (1) Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 5y9h__assembly_2__model_1 monomeric (1) Success 4.1.3-1-20251215 (887e7ef) View Download
3 1 5y9h__assembly_3__model_1 monomeric (1) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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7. Citations (1)