← Back to search
6bjy

VSV Nucleocapsid with Polyamide Bound

Method: X-RAY DIFFRACTION
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

Nucleoprotein

Vesicular stomatitis Indiana virus (strain San Juan)

UniProt P03521

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Homooligomer Protein 5 RNA 1 RNA (45-MER) × 1 ;4-{[4-(acetylamino)-1-methyl-1H-pyrrole-2-carbonyl]amino}-1-methyl-N-{4-[(1-methyl-1H-pyrrol-3-yl)amino]-4-oxobutyl}-1H-imidazole-2-carboxamide ; × 1 URANYL (VI) ION × 15 Consistent with all polymers

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers
2qvj 3pto

2 assemblies

Heteromeric or nucleic-acid complex
2gic 2wyy 2wyy 2wyy 3ptx 3pu0 3pu1 3pu4 5uk4 5uk4 6bjy 7umk

15 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name NCAP_VSIVA
Isoform —
PDB entities 2
Chains and sequence ranges Author chain A； PDBConstruct 1–421； UniProt 2–422 Author chain B； PDBConstruct 1–421； UniProt 2–422 Author chain C； PDBConstruct 1–421； UniProt 2–422 Author chain D； PDBConstruct 1–421； UniProt 2–422 Author chain E； PDBConstruct 1–421； UniProt 2–422

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id6bjy
Deposition date deposition_date2017-11-07
Structure title titleVSV Nucleocapsid with Polyamide Bound
Keywords keywordsVSV, nucleocapisd, nucleocapsid-like particle, RNA BINDING PROTEIN, rna binding protein-rna complex; rna binding protein/rna
Experimental Method methodX-RAY DIFFRACTION
▼

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6bjy__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6bjy__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6bjy__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）46.94 Å
Rg (electron density)47.08 Å
Total Rg47.37 Å
Atom count17494
Residues2131
Excluded volume309380 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6bjy__assembly_1__model_1 hexameric （6） Success 4.1.3-1-20251215 (887e7ef) View Download
▶

4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (4)

▼

6. Fold Classification (SCOP + CATH) 10 domains

CATH v4.4 (10 domains)

Domain ID domain_id6bjyA01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3570 — Rhabdovirus nucleoprotein-like fold
Homologous superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
Domain ID domain_id6bjyA02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3610 — Rhabdovirus nucleoprotein-like
Homologous superfamily homologous superfamily10 — Nucleoprotein
Domain ID domain_id6bjyB01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3570 — Rhabdovirus nucleoprotein-like fold
Homologous superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
Domain ID domain_id6bjyB02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3610 — Rhabdovirus nucleoprotein-like
Homologous superfamily homologous superfamily10 — Nucleoprotein
Domain ID domain_id6bjyC01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3570 — Rhabdovirus nucleoprotein-like fold
Homologous superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
Domain ID domain_id6bjyC02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3610 — Rhabdovirus nucleoprotein-like
Homologous superfamily homologous superfamily10 — Nucleoprotein
Domain ID domain_id6bjyD01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3570 — Rhabdovirus nucleoprotein-like fold
Homologous superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
Domain ID domain_id6bjyD02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3610 — Rhabdovirus nucleoprotein-like
Homologous superfamily homologous superfamily10 — Nucleoprotein
Domain ID domain_id6bjyE01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3570 — Rhabdovirus nucleoprotein-like fold
Homologous superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
Domain ID domain_id6bjyE02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3610 — Rhabdovirus nucleoprotein-like
Homologous superfamily homologous superfamily10 — Nucleoprotein
▶

7. Citations (1)