6kig

Structure of cyanobacterial photosystem I-IsiA supercomplex

Method: ELECTRON MICROSCOPY Dmax: 257.6 Å Quality: EXCELLENT

1. Protein Identity and Related Structures Protein Identity & Related Structures

Photosystem I P700 chlorophyll a apoprotein A1

OrganismNot specified

UniProt Q31LJ0

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 51 PDB declaration: 51-meric(51) Consistent with protein copy count Chain A; UniProt 1–763 Chain G; UniProt 1–763 Chain e; UniProt 1–763 Not recorded Photosystem I P700 chlorophyll a apoprotein A2 × 3 (Q31LJ1) Photosystem I iron-sulfur center × 3 (Q31QV2) Photosystem I reaction center subunit II × 3 (Q31PI7) Photosystem I reaction center subunit IV × 3 (Q31NL7) Photosystem I reaction center subunit III × 3 (Q31NT9) Photosystem I PsaI protein × 3 (P95823) Photosystem I reaction center subunit IX × 3 (Q31NU0) Photosystem I reaction center subunit PsaK × 3 (Q31PR9) Photosystem I reaction center subunit XI × 3 (P95822) PsaM × 3 Iron stress-induced chlorophyll-binding protein × 18 (P15347) CLA CHLOROPHYLL A × 594 PQN PHYLLOQUINONE × 6 SF4 IRON/SULFUR CLUSTER × 9 BCR BETA-CAROTENE × 144 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 45 LMU DODECYL-ALPHA-D-MALTOSIDE × 18 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 24 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.5 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

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UniProt name PSAA_SYNE7
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–763; UniProt 1–763 Author chain G; PDBConstruct 1–763; UniProt 1–763 Author chain e; PDBConstruct 1–763; UniProt 1–763

Photosystem I P700 chlorophyll a apoprotein A2

OrganismNot specified

UniProt Q31LJ1

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 51 PDB declaration: 51-meric(51) Consistent with protein copy count Chain B; UniProt 1–734 Chain H; UniProt 1–734 Chain f; UniProt 1–734 Not recorded Photosystem I P700 chlorophyll a apoprotein A1 × 3 (Q31LJ0) Photosystem I iron-sulfur center × 3 (Q31QV2) Photosystem I reaction center subunit II × 3 (Q31PI7) Photosystem I reaction center subunit IV × 3 (Q31NL7) Photosystem I reaction center subunit III × 3 (Q31NT9) Photosystem I PsaI protein × 3 (P95823) Photosystem I reaction center subunit IX × 3 (Q31NU0) Photosystem I reaction center subunit PsaK × 3 (Q31PR9) Photosystem I reaction center subunit XI × 3 (P95822) PsaM × 3 Iron stress-induced chlorophyll-binding protein × 18 (P15347) CLA CHLOROPHYLL A × 594 PQN PHYLLOQUINONE × 6 SF4 IRON/SULFUR CLUSTER × 9 BCR BETA-CAROTENE × 144 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 45 LMU DODECYL-ALPHA-D-MALTOSIDE × 18 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 24 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.5 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name PSAB_SYNE7
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–734; UniProt 1–734 Author chain H; PDBConstruct 1–734; UniProt 1–734 Author chain f; PDBConstruct 1–734; UniProt 1–734

Photosystem I iron-sulfur center

OrganismNot specified

UniProt Q31QV2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 51 PDB declaration: 51-meric(51) Consistent with protein copy count Chain C; UniProt 1–81 Chain N; UniProt 1–81 Chain g; UniProt 1–81 Not recorded Photosystem I P700 chlorophyll a apoprotein A1 × 3 (Q31LJ0) Photosystem I P700 chlorophyll a apoprotein A2 × 3 (Q31LJ1) Photosystem I reaction center subunit II × 3 (Q31PI7) Photosystem I reaction center subunit IV × 3 (Q31NL7) Photosystem I reaction center subunit III × 3 (Q31NT9) Photosystem I PsaI protein × 3 (P95823) Photosystem I reaction center subunit IX × 3 (Q31NU0) Photosystem I reaction center subunit PsaK × 3 (Q31PR9) Photosystem I reaction center subunit XI × 3 (P95822) PsaM × 3 Iron stress-induced chlorophyll-binding protein × 18 (P15347) CLA CHLOROPHYLL A × 594 PQN PHYLLOQUINONE × 6 SF4 IRON/SULFUR CLUSTER × 9 BCR BETA-CAROTENE × 144 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 45 LMU DODECYL-ALPHA-D-MALTOSIDE × 18 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 24 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.5 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name PSAC_SYNE7
Isoform
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–81; UniProt 1–81 Author chain N; PDBConstruct 1–81; UniProt 1–81 Author chain g; PDBConstruct 1–81; UniProt 1–81

Photosystem I reaction center subunit II

OrganismNot specified

UniProt Q31PI7

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 51 PDB declaration: 51-meric(51) Consistent with protein copy count Chain D; UniProt 2–142 Chain O; UniProt 2–142 Chain h; UniProt 2–142 Not recorded Photosystem I P700 chlorophyll a apoprotein A1 × 3 (Q31LJ0) Photosystem I P700 chlorophyll a apoprotein A2 × 3 (Q31LJ1) Photosystem I iron-sulfur center × 3 (Q31QV2) Photosystem I reaction center subunit IV × 3 (Q31NL7) Photosystem I reaction center subunit III × 3 (Q31NT9) Photosystem I PsaI protein × 3 (P95823) Photosystem I reaction center subunit IX × 3 (Q31NU0) Photosystem I reaction center subunit PsaK × 3 (Q31PR9) Photosystem I reaction center subunit XI × 3 (P95822) PsaM × 3 Iron stress-induced chlorophyll-binding protein × 18 (P15347) CLA CHLOROPHYLL A × 594 PQN PHYLLOQUINONE × 6 SF4 IRON/SULFUR CLUSTER × 9 BCR BETA-CAROTENE × 144 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 45 LMU DODECYL-ALPHA-D-MALTOSIDE × 18 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 24 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.5 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

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UniProt name Q31PI7_SYNE7
Isoform
PDB entities 4
Chains and sequence ranges Author chain D; PDBConstruct 1–141; UniProt 2–142 Author chain O; PDBConstruct 1–141; UniProt 2–142 Author chain h; PDBConstruct 1–141; UniProt 2–142

Photosystem I reaction center subunit IV

OrganismNot specified

UniProt Q31NL7

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 51 PDB declaration: 51-meric(51) Consistent with protein copy count Chain E; UniProt 1–75 Chain Q; UniProt 1–75 Chain i; UniProt 1–75 Not recorded Photosystem I P700 chlorophyll a apoprotein A1 × 3 (Q31LJ0) Photosystem I P700 chlorophyll a apoprotein A2 × 3 (Q31LJ1) Photosystem I iron-sulfur center × 3 (Q31QV2) Photosystem I reaction center subunit II × 3 (Q31PI7) Photosystem I reaction center subunit III × 3 (Q31NT9) Photosystem I PsaI protein × 3 (P95823) Photosystem I reaction center subunit IX × 3 (Q31NU0) Photosystem I reaction center subunit PsaK × 3 (Q31PR9) Photosystem I reaction center subunit XI × 3 (P95822) PsaM × 3 Iron stress-induced chlorophyll-binding protein × 18 (P15347) CLA CHLOROPHYLL A × 594 PQN PHYLLOQUINONE × 6 SF4 IRON/SULFUR CLUSTER × 9 BCR BETA-CAROTENE × 144 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 45 LMU DODECYL-ALPHA-D-MALTOSIDE × 18 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 24 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.5 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

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UniProt name PSAE_SYNE7
Isoform
PDB entities 5
Chains and sequence ranges Author chain E; PDBConstruct 1–75; UniProt 1–75 Author chain Q; PDBConstruct 1–75; UniProt 1–75 Author chain i; PDBConstruct 1–75; UniProt 1–75

Photosystem I reaction center subunit III

OrganismNot specified

UniProt Q31NT9

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 51 PDB declaration: 51-meric(51) Consistent with protein copy count Chain F; UniProt 1–159 Chain R; UniProt 1–159 Chain j; UniProt 1–159 Not recorded Photosystem I P700 chlorophyll a apoprotein A1 × 3 (Q31LJ0) Photosystem I P700 chlorophyll a apoprotein A2 × 3 (Q31LJ1) Photosystem I iron-sulfur center × 3 (Q31QV2) Photosystem I reaction center subunit II × 3 (Q31PI7) Photosystem I reaction center subunit IV × 3 (Q31NL7) Photosystem I PsaI protein × 3 (P95823) Photosystem I reaction center subunit IX × 3 (Q31NU0) Photosystem I reaction center subunit PsaK × 3 (Q31PR9) Photosystem I reaction center subunit XI × 3 (P95822) PsaM × 3 Iron stress-induced chlorophyll-binding protein × 18 (P15347) CLA CHLOROPHYLL A × 594 PQN PHYLLOQUINONE × 6 SF4 IRON/SULFUR CLUSTER × 9 BCR BETA-CAROTENE × 144 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 45 LMU DODECYL-ALPHA-D-MALTOSIDE × 18 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 24 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.5 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q31NT9_SYNE7
Isoform
PDB entities 6
Chains and sequence ranges Author chain F; PDBConstruct 1–159; UniProt 1–159 Author chain R; PDBConstruct 1–159; UniProt 1–159 Author chain j; PDBConstruct 1–159; UniProt 1–159

Photosystem I PsaI protein

OrganismNot specified

UniProt P95823

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 51 PDB declaration: 51-meric(51) Consistent with protein copy count Chain I; UniProt 1–38 Chain S; UniProt 1–38 Chain k; UniProt 1–38 Not recorded Photosystem I P700 chlorophyll a apoprotein A1 × 3 (Q31LJ0) Photosystem I P700 chlorophyll a apoprotein A2 × 3 (Q31LJ1) Photosystem I iron-sulfur center × 3 (Q31QV2) Photosystem I reaction center subunit II × 3 (Q31PI7) Photosystem I reaction center subunit IV × 3 (Q31NL7) Photosystem I reaction center subunit III × 3 (Q31NT9) Photosystem I reaction center subunit IX × 3 (Q31NU0) Photosystem I reaction center subunit PsaK × 3 (Q31PR9) Photosystem I reaction center subunit XI × 3 (P95822) PsaM × 3 Iron stress-induced chlorophyll-binding protein × 18 (P15347) CLA CHLOROPHYLL A × 594 PQN PHYLLOQUINONE × 6 SF4 IRON/SULFUR CLUSTER × 9 BCR BETA-CAROTENE × 144 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 45 LMU DODECYL-ALPHA-D-MALTOSIDE × 18 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 24 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.5 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name P95823_SYNE7
Isoform
PDB entities 7
Chains and sequence ranges Author chain I; PDBConstruct 1–38; UniProt 1–38 Author chain S; PDBConstruct 1–38; UniProt 1–38 Author chain k; PDBConstruct 1–38; UniProt 1–38

Photosystem I reaction center subunit IX

OrganismNot specified

UniProt Q31NU0

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 51 PDB declaration: 51-meric(51) Consistent with protein copy count Chain J; UniProt 1–41 Chain T; UniProt 1–41 Chain l; UniProt 1–41 Not recorded Photosystem I P700 chlorophyll a apoprotein A1 × 3 (Q31LJ0) Photosystem I P700 chlorophyll a apoprotein A2 × 3 (Q31LJ1) Photosystem I iron-sulfur center × 3 (Q31QV2) Photosystem I reaction center subunit II × 3 (Q31PI7) Photosystem I reaction center subunit IV × 3 (Q31NL7) Photosystem I reaction center subunit III × 3 (Q31NT9) Photosystem I PsaI protein × 3 (P95823) Photosystem I reaction center subunit PsaK × 3 (Q31PR9) Photosystem I reaction center subunit XI × 3 (P95822) PsaM × 3 Iron stress-induced chlorophyll-binding protein × 18 (P15347) CLA CHLOROPHYLL A × 594 PQN PHYLLOQUINONE × 6 SF4 IRON/SULFUR CLUSTER × 9 BCR BETA-CAROTENE × 144 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 45 LMU DODECYL-ALPHA-D-MALTOSIDE × 18 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 24 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.5 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name PSAJ_SYNE7
Isoform
PDB entities 8
Chains and sequence ranges Author chain J; PDBConstruct 1–41; UniProt 1–41 Author chain T; PDBConstruct 1–41; UniProt 1–41 Author chain l; PDBConstruct 1–41; UniProt 1–41

Photosystem I reaction center subunit PsaK

OrganismNot specified

UniProt Q31PR9

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 51 PDB declaration: 51-meric(51) Consistent with protein copy count Chain K; UniProt 1–84 Chain U; UniProt 1–84 Chain m; UniProt 1–84 Not recorded Photosystem I P700 chlorophyll a apoprotein A1 × 3 (Q31LJ0) Photosystem I P700 chlorophyll a apoprotein A2 × 3 (Q31LJ1) Photosystem I iron-sulfur center × 3 (Q31QV2) Photosystem I reaction center subunit II × 3 (Q31PI7) Photosystem I reaction center subunit IV × 3 (Q31NL7) Photosystem I reaction center subunit III × 3 (Q31NT9) Photosystem I PsaI protein × 3 (P95823) Photosystem I reaction center subunit IX × 3 (Q31NU0) Photosystem I reaction center subunit XI × 3 (P95822) PsaM × 3 Iron stress-induced chlorophyll-binding protein × 18 (P15347) CLA CHLOROPHYLL A × 594 PQN PHYLLOQUINONE × 6 SF4 IRON/SULFUR CLUSTER × 9 BCR BETA-CAROTENE × 144 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 45 LMU DODECYL-ALPHA-D-MALTOSIDE × 18 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 24 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.5 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q31PR9_SYNE7
Isoform
PDB entities 9
Chains and sequence ranges Author chain K; PDBConstruct 1–84; UniProt 1–84 Author chain U; PDBConstruct 1–84; UniProt 1–84 Author chain m; PDBConstruct 1–84; UniProt 1–84

Photosystem I reaction center subunit XI

OrganismNot specified

UniProt P95822

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 51 PDB declaration: 51-meric(51) Consistent with protein copy count Chain L; UniProt 1–166 Chain V; UniProt 1–166 Chain n; UniProt 1–166 Not recorded Photosystem I P700 chlorophyll a apoprotein A1 × 3 (Q31LJ0) Photosystem I P700 chlorophyll a apoprotein A2 × 3 (Q31LJ1) Photosystem I iron-sulfur center × 3 (Q31QV2) Photosystem I reaction center subunit II × 3 (Q31PI7) Photosystem I reaction center subunit IV × 3 (Q31NL7) Photosystem I reaction center subunit III × 3 (Q31NT9) Photosystem I PsaI protein × 3 (P95823) Photosystem I reaction center subunit IX × 3 (Q31NU0) Photosystem I reaction center subunit PsaK × 3 (Q31PR9) PsaM × 3 Iron stress-induced chlorophyll-binding protein × 18 (P15347) CLA CHLOROPHYLL A × 594 PQN PHYLLOQUINONE × 6 SF4 IRON/SULFUR CLUSTER × 9 BCR BETA-CAROTENE × 144 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 45 LMU DODECYL-ALPHA-D-MALTOSIDE × 18 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 24 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.5 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name PSAL_SYNE7
Isoform
PDB entities 10
Chains and sequence ranges Author chain L; PDBConstruct 1–166; UniProt 1–166 Author chain V; PDBConstruct 1–166; UniProt 1–166 Author chain n; PDBConstruct 1–166; UniProt 1–166

Iron stress-induced chlorophyll-binding protein

OrganismNot specified

UniProt P15347

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 51 PDB declaration: 51-meric(51) Consistent with protein copy count Chain 1; UniProt 1–342 Chain 2; UniProt 1–342 Chain 3; UniProt 1–342 Chain 4; UniProt 1–342 Chain 5; UniProt 1–342 Chain 6; UniProt 1–342 Chain Y; UniProt 1–342 Chain Z; UniProt 1–342 Chain a; UniProt 1–342 Chain b; UniProt 1–342 Chain c; UniProt 1–342 Chain d; UniProt 1–342 Chain q; UniProt 1–342 Chain r; UniProt 1–342 Chain s; UniProt 1–342 Chain t; UniProt 1–342 Chain u; UniProt 1–342 Chain v; UniProt 1–342 Not recorded Photosystem I P700 chlorophyll a apoprotein A1 × 3 (Q31LJ0) Photosystem I P700 chlorophyll a apoprotein A2 × 3 (Q31LJ1) Photosystem I iron-sulfur center × 3 (Q31QV2) Photosystem I reaction center subunit II × 3 (Q31PI7) Photosystem I reaction center subunit IV × 3 (Q31NL7) Photosystem I reaction center subunit III × 3 (Q31NT9) Photosystem I PsaI protein × 3 (P95823) Photosystem I reaction center subunit IX × 3 (Q31NU0) Photosystem I reaction center subunit PsaK × 3 (Q31PR9) Photosystem I reaction center subunit XI × 3 (P95822) PsaM × 3 CLA CHLOROPHYLL A × 594 PQN PHYLLOQUINONE × 6 SF4 IRON/SULFUR CLUSTER × 9 BCR BETA-CAROTENE × 144 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 45 LMU DODECYL-ALPHA-D-MALTOSIDE × 18 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 24 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.5 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ISIA_SYNE7
Isoform
PDB entities 12
Chains and sequence ranges Author chain 1; PDBConstruct 1–342; UniProt 1–342 Author chain 2; PDBConstruct 1–342; UniProt 1–342 Author chain 3; PDBConstruct 1–342; UniProt 1–342 Author chain 4; PDBConstruct 1–342; UniProt 1–342 Author chain 5; PDBConstruct 1–342; UniProt 1–342 Author chain 6; PDBConstruct 1–342; UniProt 1–342 Author chain Y; PDBConstruct 1–342; UniProt 1–342 Author chain Z; PDBConstruct 1–342; UniProt 1–342 Author chain a; PDBConstruct 1–342; UniProt 1–342 Author chain b; PDBConstruct 1–342; UniProt 1–342 Author chain c; PDBConstruct 1–342; UniProt 1–342 Author chain d; PDBConstruct 1–342; UniProt 1–342 Author chain q; PDBConstruct 1–342; UniProt 1–342 Author chain r; PDBConstruct 1–342; UniProt 1–342 Author chain s; PDBConstruct 1–342; UniProt 1–342 Author chain t; PDBConstruct 1–342; UniProt 1–342 Author chain u; PDBConstruct 1–342; UniProt 1–342 Author chain v; PDBConstruct 1–342; UniProt 1–342

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 6kig

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 6kig
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2. Structure Basics 2. Structure Basics

Entry ID entry_id6kig
Deposition date deposition_date2019-07-18
Structure title titleStructure of cyanobacterial photosystem I-IsiA supercomplex
Keywords keywordsPhotosystem, Antenna, Chlorophyll-binding protein, Membrane protein, Photosynthesis, iron stress-induced protein A; PHOTOSYNTHESIS
Experimental Method methodELECTRON MICROSCOPY

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier97.23
Radius of gyration Rg (electron density) rg_electron96.85
Forward intensity I(0) i031221500000.00
Molecular weight molecular_weight2001600.0 kDa
Excluded volume excluded_volume2682500 ų
Envelope volume envelope_volume3419200 ų
Hydration-shell volume shell_volume279630 ų
Envelope diameter envelope_diameter293.8
Shell Rg shell_rg92.57
Envelope Rg envelope_rg97.10
Shape Rg shape_rg96.93
Total Rg total_rg96.43
Total atoms total_atoms142968
Residues n_residues12888
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax257.6
Rg (real space) rg_real94.63
Rg uncertainty (real space) rg_real_error0.65
I(0) (real space) i0_real2.9960e+10
I(0) uncertainty (real space) i0_real_error5.5080e+08
Rg (reciprocal space) rg_reciprocal96.51
I(0) (reciprocal space) i0_reciprocal31140000000.0000
Solution quality estimate total_estimate0.9108
Solution quality rating solution_quality EXCELLENT a EXCELLENT solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary96.6
Skewness Skewness skewness0.208
Kurtosis Kurtosis kurtosis-0.693
Angular range angular_range— – 0.0800 −1
Current regularization parameter α current_alpha1.1520
Highest regularization parameter α highest_alpha3083000000.0000
Real-space data points n_real_points17
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 1.000; Stabil: 0.949; Sysdev: 1.000; Positv: 1.000; Valcen: 0.997; Smooth: 0.000

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