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6nk5

Electron Cryo-Microscopy Of Chikungunya VLP

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

E1 glycoprotein

Chikungunya virus (strain 37997)

UniProt Q5XXP3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 720 2-acetamido-2-deoxy-beta-D-glucopyranose × 480 Consistent with protein count
2 Protein homooligomer Homooligomer Protein 12 2-acetamido-2-deoxy-beta-D-glucopyranose × 8 Consistent with protein count
3 Protein homooligomer Homooligomer Protein 60 2-acetamido-2-deoxy-beta-D-glucopyranose × 40 Consistent with protein count
4 Protein homooligomer Homooligomer Protein 72 2-acetamido-2-deoxy-beta-D-glucopyranose × 48 Consistent with protein count
5 Protein homooligomer Homooligomer Protein 12 2-acetamido-2-deoxy-beta-D-glucopyranose × 8 Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers
6nk5 6nk5 6nk5 6nk5 6nk5

5 assemblies

Heteromeric or nucleic-acid complex
3j2w 3j2w 3j2w 3j2w 3j2w 5vu2 5vu2 5vu2 5vu2 5vu2 6nk6 6nk6

19 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name POLS_CHIK3
Isoform —
PDB entities 1, 2, 3
Chains and sequence ranges Author chain A； PDBConstruct 1–439； UniProt 810–1248 Author chain B； PDBConstruct 1–439； UniProt 810–1248 Author chain C； PDBConstruct 1–439； UniProt 810–1248 Author chain D； PDBConstruct 1–439； UniProt 810–1248 Author chain E； PDBConstruct 1–419； UniProt 330–748 Author chain F； PDBConstruct 1–419； UniProt 330–748 Author chain G； PDBConstruct 1–419； UniProt 330–748 Author chain H； PDBConstruct 1–419； UniProt 330–748 Author chain I； PDBConstruct 1–151； UniProt 111–261 Author chain J； PDBConstruct 1–151； UniProt 111–261 Author chain K； PDBConstruct 1–151； UniProt 111–261 Author chain L； PDBConstruct 1–151； UniProt 111–261

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6nk5
Deposition date deposition_date2019-01-04
Structure title titleElectron Cryo-Microscopy Of Chikungunya VLP
Keywords keywords;Chikungunya, virus-like particle, Structural Genomics, Center for Structural Genomics of Infectious Diseases, CSGID, VIRUS LIKE PARTICLE ;; VIRUS LIKE PARTICLE
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6nk5__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6nk5__assembly_1__model_1 | I(q)

10-2 10-1 105 106 107 108 109 1010 1011 1012 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6nk5__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）0.00 Å
Rg (electron density)270.40 Å
Total Rg270.40 Å
Atom count1867800
Residues242160
Excluded volume33142000 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6nk5__assembly_1__model_1 720-meric （720） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 6nk5__assembly_2__model_1 dodecameric （12） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
3 1 6nk5__assembly_3__model_1 60-meric （60） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
4 1 6nk5__assembly_4__model_1 72-meric （72） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
5 1 6nk5__assembly_5__model_1 dodecameric （12） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (4)

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7. Citations (1)