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6out

Asymmetric focused reconstruction of human norovirus GI.1 Norwalk strain VLP asymmetric unit in T=3 symmetry

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Capsid protein VP1

Norwalk virus (strain GI/Human/United States/Norwalk/1968)

UniProt Q83884

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 3 water × 3 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
3by1 3by2

2 assemblies

Homodimer
2zl5 3by1 3by2

3 assemblies

Homotetramer

None

Other homooligomers
1ihm 1ihm 1ihm 1ihm 1ihm 1ihm 6out 7kjp 7kjp 7kjp 7kjp 7kjp

12 assemblies

Heteromeric or nucleic-acid complex
2zl6 2zl7 3d26 5kw9 5n7m 6crj 6crj 6crj 6crj 6crj 6h6y 6h6y

17 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name CAPSD_NVN68
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 1–530； UniProt 1–530 Author chain B； PDBConstruct 1–530； UniProt 1–530 Author chain C； PDBConstruct 1–530； UniProt 1–530

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6out
Deposition date deposition_date2019-05-05
Structure title titleAsymmetric focused reconstruction of human norovirus GI.1 Norwalk strain VLP asymmetric unit in T=3 symmetry
Keywords keywordsCaliciviridae, Norovirus, GI.1, Norwalk, VIRUS LIKE PARTICLE; VIRUS LIKE PARTICLE
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6out__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6out__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6out__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）36.64 Å
Rg (electron density)35.58 Å
Total Rg36.16 Å
Atom count11279
Residues1494
Excluded volume200340 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6out__assembly_1__model_1 trimeric （3） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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6. Fold Classification (SCOP + CATH) 3 domains

SCOP 2.08 (3 domains)

Domain ID domain_idd6outa_
Class classb — All beta proteins
Fold Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
Family Family familyb.121.4.3 — Caliciviridae-like VP
Domain ID domain_idd6outb_
Class classb — All beta proteins
Fold Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
Family Family familyb.121.4.3 — Caliciviridae-like VP
Domain ID domain_idd6outc_
Class classb — All beta proteins
Fold Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
Family Family familyb.121.4.3 — Caliciviridae-like VP
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7. Citations (1)