6pb5

The E. coli class-II CAP-dependent transcription activation complex at the state 1 architecture

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

DNA-directed RNA polymerase subunit alpha

Escherichia coli

UniProt P0A7Z6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 8 DNA 2 DNA-directed RNA polymerase subunit beta × 1 (B7MIX3) ;DNA-directed RNA polymerase subunit beta' ; × 1 (P0A8T8) DNA-directed RNA polymerase subunit omega × 1 (B7MFL0) RNA polymerase sigma factor RpoD × 1 (P00579) cAMP-activated global transcriptional regulator CRP × 2 (P0ACK0) SYNTHETIC NONTEMPLATE STRAND DNA (78-MER) × 1 SYNTHETIC TEMPLATE STRAND DNA (78-MER) × 1 ZINC ION × 2 MAGNESIUM ION × 1 ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE × 2 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPOA_ECO57
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–329; UniProt 1–329 Author chain B; PDBConstruct 1–329; UniProt 1–329

DNA-directed RNA polymerase subunit beta

Escherichia coli

UniProt B7MIX3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 8 DNA 2 DNA-directed RNA polymerase subunit alpha × 2 (P0A7Z6) ;DNA-directed RNA polymerase subunit beta' ; × 1 (P0A8T8) DNA-directed RNA polymerase subunit omega × 1 (B7MFL0) RNA polymerase sigma factor RpoD × 1 (P00579) cAMP-activated global transcriptional regulator CRP × 2 (P0ACK0) SYNTHETIC NONTEMPLATE STRAND DNA (78-MER) × 1 SYNTHETIC TEMPLATE STRAND DNA (78-MER) × 1 ZINC ION × 2 MAGNESIUM ION × 1 ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE × 2 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPOB_ECO45
Isoform —
PDB entities 2
Chains and sequence ranges Author chain C; PDBConstruct 1–1342; UniProt 1–1342

;DNA-directed RNA polymerase subunit beta' ;

Escherichia coli

UniProt P0A8T8

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 8 DNA 2 DNA-directed RNA polymerase subunit alpha × 2 (P0A7Z6) DNA-directed RNA polymerase subunit beta × 1 (B7MIX3) DNA-directed RNA polymerase subunit omega × 1 (B7MFL0) RNA polymerase sigma factor RpoD × 1 (P00579) cAMP-activated global transcriptional regulator CRP × 2 (P0ACK0) SYNTHETIC NONTEMPLATE STRAND DNA (78-MER) × 1 SYNTHETIC TEMPLATE STRAND DNA (78-MER) × 1 ZINC ION × 2 MAGNESIUM ION × 1 ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE × 2 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPOC_ECO57
Isoform —
PDB entities 3
Chains and sequence ranges Author chain D; PDBConstruct 1–1407; UniProt 1–1407

DNA-directed RNA polymerase subunit omega

Escherichia coli

UniProt B7MFL0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 8 DNA 2 DNA-directed RNA polymerase subunit alpha × 2 (P0A7Z6) DNA-directed RNA polymerase subunit beta × 1 (B7MIX3) ;DNA-directed RNA polymerase subunit beta' ; × 1 (P0A8T8) RNA polymerase sigma factor RpoD × 1 (P00579) cAMP-activated global transcriptional regulator CRP × 2 (P0ACK0) SYNTHETIC NONTEMPLATE STRAND DNA (78-MER) × 1 SYNTHETIC TEMPLATE STRAND DNA (78-MER) × 1 ZINC ION × 2 MAGNESIUM ION × 1 ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE × 2 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPOZ_ECO45
Isoform —
PDB entities 4
Chains and sequence ranges Author chain E; PDBConstruct 1–91; UniProt 1–91

RNA polymerase sigma factor RpoD

Escherichia coli

UniProt P00579

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 8 DNA 2 DNA-directed RNA polymerase subunit alpha × 2 (P0A7Z6) DNA-directed RNA polymerase subunit beta × 1 (B7MIX3) ;DNA-directed RNA polymerase subunit beta' ; × 1 (P0A8T8) DNA-directed RNA polymerase subunit omega × 1 (B7MFL0) cAMP-activated global transcriptional regulator CRP × 2 (P0ACK0) SYNTHETIC NONTEMPLATE STRAND DNA (78-MER) × 1 SYNTHETIC TEMPLATE STRAND DNA (78-MER) × 1 ZINC ION × 2 MAGNESIUM ION × 1 ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE × 2 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPOD_ECOLI
Isoform —
PDB entities 5
Chains and sequence ranges Author chain F; PDBConstruct 16–628; UniProt 1–613

cAMP-activated global transcriptional regulator CRP

Escherichia coli

UniProt P0ACK0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 8 DNA 2 DNA-directed RNA polymerase subunit alpha × 2 (P0A7Z6) DNA-directed RNA polymerase subunit beta × 1 (B7MIX3) ;DNA-directed RNA polymerase subunit beta' ; × 1 (P0A8T8) DNA-directed RNA polymerase subunit omega × 1 (B7MFL0) RNA polymerase sigma factor RpoD × 1 (P00579) SYNTHETIC NONTEMPLATE STRAND DNA (78-MER) × 1 SYNTHETIC TEMPLATE STRAND DNA (78-MER) × 1 ZINC ION × 2 MAGNESIUM ION × 1 ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE × 2 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CRP_ECO57
Isoform —
PDB entities 6
Chains and sequence ranges Author chain G; PDBConstruct 1–210; UniProt 1–210 Author chain H; PDBConstruct 1–210; UniProt 1–210

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6pb5
Deposition date deposition_date2019-06-13
Structure title titleThe E. coli class-II CAP-dependent transcription activation complex at the state 1 architecture
Keywords keywordsclass-II, CAP-dependent, transcription activation complex, TRANSCRIPTION, TRANSCRIPTION-DNA complex; TRANSCRIPTION/DNA
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6pb5__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6pb5__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6pb5__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)61.25 Å
Rg (electron density)60.08 Å
Total Rg60.31 Å
Atom count69718
Residues4240
Excluded volume620180 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6pb5__assembly_1__model_1 decameric (10) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (11)

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7. Citations (1)